View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15781_high_4 (Length: 334)
Name: NF15781_high_4
Description: NF15781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15781_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 15 - 320
Target Start/End: Original strand, 11736307 - 11736617
Alignment:
| Q |
15 |
aaaacgcataaccaatcccctaagttcaaaaacacatctatatataatgtaaaataagaggaaggaaccatatgccttgtgtatagaattcactgatttg |
114 |
Q |
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| T |
11736307 |
aaaacgtataaccaatcgcctaagttcaaaaacacatctatatataatataaaataagaggaa----ccatatggcttgtgtatagaattcactgatttg |
11736402 |
T |
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| Q |
115 |
attgttttgt---------ataatgaagttctttacacagtttactactannnnnnngttactctcttggtttctgagtatccaagcagagaaactcaaa |
205 |
Q |
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| T |
11736403 |
attgttttgtgttgtgactataatgaagttttttacacagtttactactattgttttgttactctcttgctttttgagtatccaagcagagaaactcaaa |
11736502 |
T |
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| Q |
206 |
tcctcacaatcatgtgaatttcaagctattttcaattttggtgattctaattctgatactggttgtatgtctgcagcattttatcctgctattttgcctt |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11736503 |
tcctcacaatcatgtgaatttcaagctattttcaattttggtgattctaattcagatactggttgtatgtctgcagcattttatcctgctattttgcctt |
11736602 |
T |
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| Q |
306 |
atggtgaaaccttct |
320 |
Q |
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| T |
11736603 |
atggtgagaccttct |
11736617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 182 - 320
Target Start/End: Original strand, 11740638 - 11740776
Alignment:
| Q |
182 |
agtatccaagcagagaaactcaaatcctcacaatcatgtgaatttcaagctattttcaattttggtgattctaattctgatactggttgtatgtctgcag |
281 |
Q |
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| T |
11740638 |
agtatacaagcagaggaattcaaatcctcacaaccatgtgaatttcaagctattttcaattttggtgattctaattcagatactggttgtatgtcagcgg |
11740737 |
T |
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| Q |
282 |
cattttatcctgctattttgccttatggtgaaaccttct |
320 |
Q |
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| T |
11740738 |
catttcacccagctgttttgccttatggtgaaaccttct |
11740776 |
T |
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