View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15781_low_1 (Length: 663)

Name: NF15781_low_1
Description: NF15781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15781_low_1
NF15781_low_1
[»] chr3 (3 HSPs)
chr3 (16-663)||(4294545-4295192)
chr3 (319-663)||(4286375-4286721)
chr3 (20-168)||(4286144-4286292)
[»] scaffold0302 (3 HSPs)
scaffold0302 (385-663)||(15124-15402)
scaffold0302 (233-312)||(15493-15576)
scaffold0302 (29-147)||(15658-15775)
[»] scaffold0211 (2 HSPs)
scaffold0211 (395-663)||(26129-26397)
scaffold0211 (50-139)||(26638-26728)
[»] scaffold0100 (1 HSPs)
scaffold0100 (395-663)||(33710-33978)
[»] scaffold0084 (1 HSPs)
scaffold0084 (385-659)||(16910-17184)
[»] chr8 (4 HSPs)
chr8 (385-557)||(21370872-21371044)
chr8 (395-580)||(21404083-21404268)
chr8 (395-580)||(21798575-21798760)
chr8 (433-609)||(21934713-21934889)
[»] chr7 (1 HSPs)
chr7 (385-557)||(44442502-44442674)


Alignment Details
Target: chr3 (Bit Score: 560; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 560; E-Value: 0
Query Start/End: Original strand, 16 - 663
Target Start/End: Original strand, 4294545 - 4295192
Alignment:
16 acatatttcattggacgatttaaacaatagaaattttcaccattttccttttgaaattttgcatctgtacaaaatttcccgatacatagaaagaacacaa 115  Q
    ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
4294545 acatatttcattggacgattttaacaatagaaatattcaccattttccttttgaaattttgcatctgtacaaaatttcccaatacatagaaagaacacaa 4294644  T
116 gttaagtgtatatccttcacacgctacctatcataatagaaaagtaattcatattttgtcttaatagatgtattaggccatgaaggtacatgcaaagaat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
4294645 gttaagtgtatatccttcacacgctacctatcataatagaaaagtaattcatattttgtcttaatagatgtattaggccatgaagttacatgcaaagaat 4294744  T
216 agagaataaattcatgttattaattaattagacttttattcatatactcaacaatcaatctatgcaatgcatggtacgtaacatgatcagtcctatatat 315  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||    
4294745 agagaagaaattcatgttattaattaattagacttttattcatatactcaacaattaatctatgcaaagcatggtacgtaacatgatcagtcctatatat 4294844  T
316 gactaccttgcaaggcaacgaacagcaaaaacacaatacatctacatcctcttatacatataattcgtaataattaattaacaaccatgtcaactagatc 415  Q
     | ||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
4294845 aaataccttgcatggcaacgaacagcaaaatcacaatatatctacatcctcttatacatataattcataataattaattaacaaccatgtcaactagatc 4294944  T
416 cctcaccatattcataattgctcatgtgtggctctttatgatcacaacatcagtagcacaaattgtcatagacacaagtggcgaacccgttgaggacgat 515  Q
    |||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
4294945 cctcactatattcatcattgctcatgtgttgctctttatgatcacaacatcagtagcacaaattgtcatagacacaagtggcgaacccgttgaggacgat 4295044  T
516 gaggaatacttcatcaggcctgctatcacaggcaatggaggaggttccattttggtcaccagaaatgggccatgccctttgcacgttggtcttggcaaca 615  Q
    |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
4295045 gaggaatacttcatcaggcccgctatcacaggtaatggaggaggttccattttggtcaccagaaatgcgccatgccctttgcacgttggtcttggcaaca 4295144  T
616 gtgaagggacacttggacttgctgtgaaattcactccttttgctcctc 663  Q
    ||||||||||||||||| | |||||||||||||||||||| |||||||    
4295145 gtgaagggacacttggagtggctgtgaaattcactcctttcgctcctc 4295192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 319 - 663
Target Start/End: Original strand, 4286375 - 4286721
Alignment:
319 taccttgcaaggcaacgaacagcaaaaacacaatacatctacatcctcttatacatata--attcgtaataattaattaacaaccatgtcaactagatcc 416  Q
    ||||||||| |||| |||||||||||||||||| ||| ||||| |||||||||||||||  |||| ||||||||||||||||||||||||||  ||| ||    
4286375 taccttgcatggcagcgaacagcaaaaacacaaaacaactacaacctcttatacatatataattcataataattaattaacaaccatgtcaatcagaccc 4286474  T
417 ctcaccatattcataattgctcatgtgtggctctttatgatcacaacatcagtagcacaaattgtcatagacacaagtggcgaacccgttgaggacgatg 516  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
4286475 ctcaccatattcatcattgctcatgtgtggctctttatgatcacaacatcagtagcacaaattgtcatagacacaagtggcgaacccgttgaggacgatg 4286574  T
517 aggaatacttcatcaggcctgctatcacaggcaatggaggaggttccattttggtcaccagaaatgggccatgccctttgcacgttggtcttggcaacag 616  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
4286575 aggaatacttcatcaggcctgctatcacaggcaatggaggaggttccattttggtcaccagaaatgggccatgccctttgcacgttggtcttgggaacag 4286674  T
617 tgaagggacacttggacttgctgtgaaattcactccttttgctcctc 663  Q
    |||||||||||||||| | |||||||||||||||||||| |||||||    
4286675 tgaagggacacttggaatggctgtgaaattcactcctttcgctcctc 4286721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 20 - 168
Target Start/End: Original strand, 4286144 - 4286292
Alignment:
20 atttcattggacgatttaaacaatagaaattttcaccattttccttttgaaattttgcatctgtacaaaatttcccgatacatagaaagaacacaagtta 119  Q
    |||||| | ||||||| ||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||    
4286144 atttcactcgacgattgaaacaagggaaattttcaccattttccttttgaaattttgcatctgtacaaaatttcccgatccaaagaaataacacaagtta 4286243  T
120 agtgtatatccttcacacgctacctatcataatagaaaagtaattcata 168  Q
    ||||| ||| ||| |||||| |||||||||||||||| | |||||||||    
4286244 agtgtttattcttgacacgccacctatcataatagaagactaattcata 4286292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0302 (Bit Score: 183; Significance: 1e-98; HSPs: 3)
Name: scaffold0302
Description:

Target: scaffold0302; HSP #1
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 385 - 663
Target Start/End: Complemental strand, 15402 - 15124
Alignment:
385 ataattaattaacaaccatgtcaactagatccctcaccatattcataattgctcatgtgtggctctttatgatcacaacatcagtagcacaaattgtcat 484  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| || |||   | ||||||| || | ||| |||||||    
15402 ataatcaattaacaaccatgtcaactagatccctcaccatattcatactagctcatgtgtggcttttgatggcaaaaacatcaatatcgcaatttgtcat 15303  T
485 agacacaagtggcgaacccgttgaggacgatgaggaatacttcatcaggcctgctatcacaggcaatggaggaggttccattttggtcaccagaaatggg 584  Q
     ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| |||||||||| ||||||||    
15302 cgacacaagtggtgaacccgttgaggacgatgaggaatacttcatcaggcctgctatcggaggcaatggaggaggttccactttggtcaccggaaatggg 15203  T
585 ccatgccctttgcacgttggtcttggcaacagtgaagggacacttggacttgctgtgaaattcactccttttgctcctc 663  Q
    |||||||||||||| |||||||||| |||||||||||||||||||||| | |||||||| |||||||||||||||||||    
15202 ccatgccctttgcatgttggtcttgacaacagtgaagggacacttggagtggctgtgaagttcactccttttgctcctc 15124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0302; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 233 - 312
Target Start/End: Complemental strand, 15576 - 15493
Alignment:
233 tattaattaattagacttttattcatatactcaacaatcaatctatgca----atgcatggtacgtaacatgatcagtcctata 312  Q
    |||||||||||| || ||||||||||||||||| |||||| | ||||||    ||||||||||||||||| |||||||||||||    
15576 tattaattaattggatttttattcatatactcatcaatcattttatgcattgcatgcatggtacgtaacaagatcagtcctata 15493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0302; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 29 - 147
Target Start/End: Complemental strand, 15775 - 15658
Alignment:
29 gacgatttaaacaatagaaattttcaccattttccttttgaaattttgcatctgtacaaaatttcccgatacatagaaagaacacaagttaagtgtatat 128  Q
    ||||||| |||| ||  |||||||||||||||||||||| |  |||| ||||  |||||| || |||||| || || |||||||||| | |||| | |||    
15775 gacgattgaaactatgaaaattttcaccattttccttttcattttttccatccttacaaagttgcccgatccaaag-aagaacacaaatcaagtttttat 15677  T
129 ccttcacacgctacctatc 147  Q
    |||| |||||| |||||||    
15676 ccttgacacgccacctatc 15658  T

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Target: scaffold0211 (Bit Score: 165; Significance: 6e-88; HSPs: 2)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 395 - 663
Target Start/End: Complemental strand, 26397 - 26129
Alignment:
395 aacaaccatgtcaactagatccctcaccatattcataattgctcatgtgtggctctttatgatcacaacatcagtagcacaaattgtcatagacacaagt 494  Q
    ||||||||||||||||||||||||||||||||||||  | |||||||||||||| || |||   |||| |||| |||| ||  ||||||| |||||||||    
26397 aacaaccatgtcaactagatccctcaccatattcattctagctcatgtgtggcttttgatggcaacaaaatcaatagcccagtttgtcatcgacacaagt 26298  T
495 ggcgaacccgttgaggacgatgaggaatacttcatcaggcctgctatcacaggcaatggaggaggttccattttggtcaccagaaatgggccatgccctt 594  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||| ||||||||||||||||||    
26297 ggcgaacccgttgaggacgacgaggaatacttcatcaggcctgctatcacaggcaatggaggaggtttcactttgatcaccggaaatgggccatgccctt 26198  T
595 tgcacgttggtcttggcaacagtgaagggacacttggacttgctgtgaaattcactccttttgctcctc 663  Q
    || | |||||||||| ||||| |||||||||||||||| | |||||||| |||||||||||||||||||    
26197 tgaatgttggtcttgacaacactgaagggacacttggagtggctgtgaagttcactccttttgctcctc 26129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 50 - 139
Target Start/End: Complemental strand, 26728 - 26638
Alignment:
50 tttcaccattttccttttgaaattttgc-atctgtacaaaatttcccgatacatagaaagaacacaagttaagtgtatatccttcacacgc 139  Q
    ||||||||||||||||||  | |||| | |||| ||||||||| |||||| || || ||||||||||||||||| | | ||||| ||||||    
26728 tttcaccattttcctttttcattttttccatctttacaaaattccccgattcaaaggaagaacacaagttaagtctttttccttgacacgc 26638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 149; Significance: 2e-78; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 395 - 663
Target Start/End: Original strand, 33710 - 33978
Alignment:
395 aacaaccatgtcaactagatccctcaccatattcataattgctcatgtgtggctctttatgatcacaacatcagtagcacaaattgtcatagacacaagt 494  Q
    |||||| |||||||||||||||||||||||||||||  | |||||||| ||||| || |||   ||||||||| |||| ||  ||||||| |||||||||    
33710 aacaactatgtcaactagatccctcaccatattcatcctagctcatgtttggcttttgatggcaacaacatcaatagctcagtttgtcatcgacacaagt 33809  T
495 ggcgaacccgttgaggacgatgaggaatacttcatcaggcctgctatcacaggcaatggaggaggttccattttggtcaccagaaatgggccatgccctt 594  Q
    |||||||| |||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||| |||||||||  ||||||| ||||||||||    
33810 ggcgaacctgttgaggacgatgaggaatacttcattagacctgctatcacaggcaacggaggaggttccactttggtcacaggaaatggaccatgccctt 33909  T
595 tgcacgttggtcttggcaacagtgaagggacacttggacttgctgtgaaattcactccttttgctcctc 663  Q
    |||| |||||||||| ||||| |||||| ||||||||| | |||||||| |||||||||||||||||||    
33910 tgcatgttggtcttgacaacactgaaggaacacttggagtggctgtgaagttcactccttttgctcctc 33978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084 (Bit Score: 147; Significance: 4e-77; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 385 - 659
Target Start/End: Original strand, 16910 - 17184
Alignment:
385 ataattaattaacaaccatgtcaactagatccctcaccatattcataattgctcatgtgtggctctttatgatcacaacatcagtagcacaaattgtcat 484  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||  | |||||||||||||| || |||   |||| |||| |||| ||  |||||||    
16910 ataatcaattaacaaccatgtcaactagatccctcaccatattcattctagctcatgtgtggcttttgatggcaacaaaatcattagcccagtttgtcat 17009  T
485 agacacaagtggcgaacccgttgaggacgatgaggaatacttcatcaggcctgctatcacaggcaatggaggaggttccattttggtcaccagaaatggg 584  Q
     ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| || |||  ||||| ||||||||    
17010 cgacacaagtggcgaacccgttgaggacgacgaggaatacttcattaggcctgctatcacaggcaatggaggaggtttcactttcatcaccggaaatggg 17109  T
585 ccatgccctttgcacgttggtcttggcaacagtgaagggacacttggacttgctgtgaaattcactccttttgct 659  Q
    |||||||||||| | |||||||||| ||||| ||||||||||||||||    ||||||| |||| ||||||||||    
17110 ccatgccctttgaatgttggtcttgacaacactgaagggacacttggagcgcctgtgaagttcattccttttgct 17184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 97; Significance: 2e-47; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 385 - 557
Target Start/End: Complemental strand, 21371044 - 21370872
Alignment:
385 ataattaattaacaaccatgtcaactagatccctcaccatattcataattgctcatgtgtggctctttatgatcacaacatcagtagcacaaattgtcat 484  Q
    |||||||| |||||||||||||||||| ||||||||||||||||||  ||||| ||||||| || || ||||  || |||||| |||| ||  |||||||    
21371044 ataattaaataacaaccatgtcaactaaatccctcaccatattcatccttgctaatgtgtgtcttttgatgacaacgacatcaatagctcagtttgtcat 21370945  T
485 agacacaagtggcgaacccgttgaggacgatgaggaatacttcatcaggcctgctatcacaggcaatggagga 557  Q
     ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||    
21370944 cgacacaagtggcgaaccagttgaggacgacgaggaatacttcatcaggcctgctatcactggcaatggagga 21370872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 395 - 580
Target Start/End: Complemental strand, 21404268 - 21404083
Alignment:
395 aacaaccatgtcaactagatccctcaccatattcataattgctcatgtgtggctctttatgatcacaacatcagtagcacaaattgtcatagacacaagt 494  Q
    ||||||||||||||||| |||| |||||||||||||  ||||| |||||||||| ||  || | ||||||||| |||| ||  ||||||| ||||||||     
21404268 aacaaccatgtcaactatatccttcaccatattcatccttgctaatgtgtggcttttggtggtaacaacatcaatagctcagtttgtcatcgacacaagc 21404169  T
495 ggcgaacccgttgaggacgatgaggaatacttcatcaggcctgctatcacaggcaatggaggaggttccattttggtcaccagaaa 580  Q
    || ||||| |||||| | |||||||| ||||||||||| ||||||||||| ||||| |||||| ||  || ||| |||||||||||    
21404168 ggtgaacctgttgagaatgatgaggattacttcatcagacctgctatcaccggcaacggaggaagtctcactttagtcaccagaaa 21404083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 395 - 580
Target Start/End: Complemental strand, 21798760 - 21798575
Alignment:
395 aacaaccatgtcaactagatccctcaccatattcataattgctcatgtgtggctctttatgatcacaacatcagtagcacaaattgtcatagacacaagt 494  Q
    ||||||||||||||||| |||| |||||||||||||  ||||| |||||||||| ||  || | ||||||||| |||| ||  ||||||| ||||||||     
21798760 aacaaccatgtcaactatatccttcaccatattcatccttgctaatgtgtggcttttggtggtaacaacatcaatagctcagtttgtcatcgacacaagc 21798661  T
495 ggcgaacccgttgaggacgatgaggaatacttcatcaggcctgctatcacaggcaatggaggaggttccattttggtcaccagaaa 580  Q
    || ||||| |||||| | |||||||| ||||||||||| ||||||||||| ||||| |||||| ||  || ||| |||||||||||    
21798660 ggtgaacctgttgagaatgatgaggattacttcatcagacctgctatcaccggcaacggaggaagtctcactttagtcaccagaaa 21798575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 433 - 609
Target Start/End: Complemental strand, 21934889 - 21934713
Alignment:
433 ttgctcatgtgtggctctttatgatcacaacatcagtagcacaaattgtcatagacacaagtggcgaacccgttgaggacgatgaggaatacttcatcag 532  Q
    ||||||||||||| |||||||| |  |||||| || |||| ||  ||||| | ||||||   || ||||||||||| | ||| || |||||||||||| |    
21934889 ttgctcatgtgtgtctctttataacgacaacaacaatagctcagtttgtcttggacacagtcggagaacccgttgaaggcgacgaagaatacttcatccg 21934790  T
533 gcctgctatcacaggcaatggaggaggttccattttggtcaccagaaatgggccatgccctttgcacgttggtcttg 609  Q
     || | |||||||  ||| |||||| |||||| | |||||| ||||||||   |||||||||| || ||||||||||    
21934789 tccagttatcacaaacaaaggaggacgttccactatggtcagcagaaatgaatcatgccctttacatgttggtcttg 21934713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 7e-26; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 385 - 557
Target Start/End: Original strand, 44442502 - 44442674
Alignment:
385 ataattaattaacaaccatgtcaactagatccctcaccatattcataattgctcatgtgtggctctttatgatcacaacatcagtagcacaaattgtcat 484  Q
    |||| ||||||||||||||| | ||||||||| ||||  || ||||  |||||||||||||  |||| ||||||||||||||| |||| ||  | |||||    
44442502 ataactaattaacaaccatgactactagatccttcacggtaatcattgttgctcatgtgtgtgtcttcatgatcacaacatcaatagctcagttggtcat 44442601  T
485 agacacaagtggcgaacccgttgaggacgatgaggaatacttcatcaggcctgctatcacaggcaatggagga 557  Q
    |||||| | ||| ||||| ||||||| || ||| ||||||||||||||||||   ||||||||||| ||||||    
44442602 agacacgaatggtgaaccagttgaggccggtgacgaatacttcatcaggcctataatcacaggcaacggagga 44442674  T

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