View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15781_low_10 (Length: 269)
Name: NF15781_low_10
Description: NF15781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15781_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 18 - 255
Target Start/End: Complemental strand, 30995996 - 30995759
Alignment:
| Q |
18 |
ataatcaatacacattatttgttgtttgagtttgacgaaatttgttggggtttaattgttggagtaaggaggaaaaatgagtttaaaacaaaattgaaca |
117 |
Q |
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| T |
30995996 |
ataatcaatacacattatttgttgtttgagtttgacgaaatttgttggggtttaattgttggagtaaggaggaaaaatgagtttaaaacaaaattgaaca |
30995897 |
T |
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| Q |
118 |
caaatgacatgatctctttatgttataatatgtaagttgtgtatcatgtagtaactcccaaacgggagcgatatagagttaaaaagtggggatatttcaa |
217 |
Q |
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| T |
30995896 |
caaatgacaggatctctttatgttatcatatgtaagttgtgtatcatgtagtaactcccaaacgggagcgatatagagttaaaaagtggggatatttcaa |
30995797 |
T |
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| Q |
218 |
tgcatattttggttgttggagtcttatttctccctttg |
255 |
Q |
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| T |
30995796 |
tgcatattttggttgttggagtcttatttctccctttg |
30995759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 96
Target Start/End: Original strand, 10892954 - 10893014
Alignment:
| Q |
37 |
tgttgtttgagtttgacgaaatttgttggggtttaat-tgttggagtaaggaggaaaaatg |
96 |
Q |
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| T |
10892954 |
tgttgtttgagtttgacgaattttgttggtgtttgatgtgttggagtagggaaggaaaatg |
10893014 |
T |
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