View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15781_low_2 (Length: 575)

Name: NF15781_low_2
Description: NF15781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15781_low_2
NF15781_low_2
[»] chr7 (4 HSPs)
chr7 (34-397)||(41269010-41269372)
chr7 (403-521)||(35341536-35341653)
chr7 (402-498)||(48250153-48250249)
chr7 (403-521)||(48072389-48072504)
[»] chr5 (18 HSPs)
chr5 (398-557)||(29989957-29990116)
chr5 (395-557)||(38010631-38010793)
chr5 (397-557)||(13478062-13478222)
chr5 (396-557)||(13015374-13015535)
chr5 (396-557)||(13086746-13086907)
chr5 (396-557)||(13421027-13421188)
chr5 (423-556)||(10292893-10293024)
chr5 (403-521)||(11607588-11607705)
chr5 (408-521)||(33858592-33858704)
chr5 (397-552)||(1826253-1826407)
chr5 (403-521)||(39570097-39570214)
chr5 (403-500)||(19357335-19357432)
chr5 (447-524)||(37881185-37881262)
chr5 (403-509)||(9827788-9827894)
chr5 (397-449)||(35622939-35622991)
chr5 (455-521)||(42148198-42148263)
chr5 (419-500)||(33271630-33271711)
chr5 (398-443)||(35622811-35622856)
[»] chr1 (17 HSPs)
chr1 (398-557)||(8809657-8809816)
chr1 (56-289)||(27685431-27685664)
chr1 (400-557)||(35998249-35998406)
chr1 (410-556)||(35534413-35534555)
chr1 (397-529)||(29119370-29119501)
chr1 (403-529)||(32676136-32676261)
chr1 (403-520)||(2569037-2569152)
chr1 (403-493)||(25161309-25161399)
chr1 (403-499)||(8462129-8462224)
chr1 (399-449)||(18056149-18056199)
chr1 (404-500)||(6223052-6223148)
chr1 (397-456)||(46435571-46435630)
chr1 (432-493)||(3688919-3688980)
chr1 (404-449)||(5581281-5581326)
chr1 (404-437)||(16679835-16679868)
chr1 (460-493)||(8555486-8555519)
chr1 (397-449)||(18056019-18056071)
[»] chr4 (25 HSPs)
chr4 (398-557)||(52012773-52012932)
chr4 (402-557)||(9799380-9799535)
chr4 (398-546)||(47943153-47943302)
chr4 (403-552)||(21260794-21260942)
chr4 (404-529)||(33249420-33249544)
chr4 (397-529)||(12473698-12473829)
chr4 (397-529)||(12528107-12528238)
chr4 (403-521)||(35869625-35869742)
chr4 (403-529)||(22343337-22343462)
chr4 (503-557)||(46720216-46720270)
chr4 (88-261)||(21084932-21085105)
chr4 (426-493)||(46719953-46720020)
chr4 (404-493)||(52910130-52910219)
chr4 (403-480)||(55590482-55590559)
chr4 (403-520)||(51811914-51812030)
chr4 (404-500)||(49999662-49999758)
chr4 (398-449)||(28092740-28092791)
chr4 (404-485)||(34829172-34829253)
chr4 (396-443)||(28092874-28092921)
chr4 (398-443)||(36634529-36634574)
chr4 (398-443)||(54277653-54277698)
chr4 (467-497)||(1796196-1796226)
chr4 (469-521)||(33174581-33174630)
chr4 (397-443)||(36634500-36634546)
chr4 (407-449)||(49998486-49998528)
[»] chr3 (25 HSPs)
chr3 (398-557)||(31187087-31187246)
chr3 (398-557)||(42664668-42664827)
chr3 (398-557)||(47186170-47186329)
chr3 (399-557)||(34029308-34029466)
chr3 (402-524)||(47426349-47426470)
chr3 (404-500)||(50934501-50934597)
chr3 (403-521)||(44380254-44380371)
chr3 (398-456)||(21963073-21963131)
chr3 (407-529)||(33509684-33509805)
chr3 (398-449)||(46489652-46489703)
chr3 (397-449)||(53440540-53440592)
chr3 (396-443)||(6053733-6053780)
chr3 (405-456)||(32319483-32319534)
chr3 (398-449)||(34955068-34955119)
chr3 (404-451)||(43689404-43689451)
chr3 (398-449)||(53440669-53440720)
chr3 (403-469)||(10018671-10018737)
chr3 (405-499)||(39498744-39498838)
chr3 (416-521)||(37742738-37742842)
chr3 (398-443)||(42273329-42273374)
chr3 (398-443)||(46489786-46489831)
chr3 (411-500)||(35094554-35094645)
chr3 (403-469)||(10179868-10179934)
chr3 (426-456)||(22136927-22136957)
chr3 (398-443)||(34955206-34955251)
[»] chr6 (8 HSPs)
chr6 (396-553)||(34245560-34245717)
chr6 (404-552)||(11113557-11113700)
chr6 (402-500)||(5403950-5404048)
chr6 (404-521)||(1211898-1212014)
chr6 (402-456)||(11753166-11753220)
chr6 (398-443)||(12800378-12800423)
chr6 (398-443)||(29879379-29879424)
chr6 (405-445)||(7234489-7234529)
[»] chr8 (9 HSPs)
chr8 (395-551)||(1514795-1514951)
chr8 (403-529)||(41179609-41179734)
chr8 (410-521)||(18168392-18168503)
chr8 (410-521)||(18631949-18632060)
chr8 (402-523)||(24337882-24338002)
chr8 (404-556)||(32825854-32826005)
chr8 (411-521)||(4708361-4708470)
chr8 (403-521)||(11254082-11254198)
chr8 (398-445)||(40530538-40530585)
[»] chr2 (13 HSPs)
chr2 (398-557)||(10163471-10163636)
chr2 (403-529)||(34392127-34392252)
chr2 (403-499)||(21603959-21604055)
chr2 (403-498)||(37357997-37358092)
chr2 (406-500)||(7381695-7381789)
chr2 (472-553)||(3668031-3668112)
chr2 (417-529)||(23863849-23863958)
chr2 (402-538)||(4775633-4775769)
chr2 (398-449)||(37811086-37811137)
chr2 (408-482)||(14565945-14566019)
chr2 (407-444)||(3668346-3668383)
chr2 (398-449)||(37811214-37811265)
chr2 (464-552)||(41095809-41095896)
[»] scaffold0032 (1 HSPs)
scaffold0032 (403-552)||(34194-34341)
[»] scaffold0519 (1 HSPs)
scaffold0519 (403-521)||(11195-11311)
[»] scaffold0229 (1 HSPs)
scaffold0229 (404-500)||(13080-13176)
[»] scaffold0263 (1 HSPs)
scaffold0263 (404-500)||(23173-23263)
[»] scaffold0464 (1 HSPs)
scaffold0464 (401-451)||(6422-6472)
[»] scaffold0163 (1 HSPs)
scaffold0163 (397-443)||(28119-28165)


Alignment Details
Target: chr7 (Bit Score: 352; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 34 - 397
Target Start/End: Original strand, 41269010 - 41269372
Alignment:
Q  34 ataattaatgattgaattattggcagctatcaaacaatgaagcacatcctggttaccatgatgaagtggacattgagtttcttggaacaacatttggaaa 133  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41269010 ataattaatgattgaattattggcagctatcaaacaatgaagcacatcctggttaccatgatgaagtggacattgagtttcttggaacaacatttggaaa 41269109  T
Q  134 gccttatactttgcagaccaatgtttatgtaagagggagtggtgatgggaaaattgtaggtagagaaatgaagtttcatctttggtttgatcctaccaaa 233  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41269110 gccttatactttgcagaccaatgtttatgtaagagggagtggtgatgggaaaattgtaggtagagaaatgaagtttcatctttggtttgatcctaccaaa 41269209  T
Q  234 ggttttcatcactatgctatactatggagtcctaaagagataatgtaagtcactgtataatttaattatattcctgaatgtctctgaatgtgaaattgaa 333  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41269210 ggttttcatcactatgctatactatggagtcctaaagagataatgtaagtcactgtataatttaattatattcctgaatgtctctgaatgtgaaattgaa 41269309  T
Q  334 tgcctagattaattattattagtattaatctaaaatagtatagggtactagacaggacatgcac 397  Q
    ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||    
T  41269310 tgcctagattaatta-tattagtactaatctaaaatagtatagggtactagacaggacatgcac 41269372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 403 - 521
Target Start/End: Original strand, 35341536 - 35341653
Alignment:
Q  403 ccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgagacacataccaatgttactttataaatgttttatttaatatatgc 502  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||| | |||| | ||| |||||||||||||||||||||||||||||| |||||       
T  35341536 ccacttgtgtaccattaaggtaccaatgatatataccattgaccaattatagtgtgccacctaccaatgttactttataaatgttttatttgatata-ct 35341634  T
Q  503 tttttaaagtgtgtgccac 521  Q
    ||||||||| |||||||||    
T  35341635 tttttaaagggtgtgccac 35341653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 402 - 498
Target Start/End: Original strand, 48250153 - 48250249
Alignment:
Q  402 accacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgagacacataccaatgttactttataaatgttttatttaatat 498  Q
    ||||||||||||||||||||||||||||| |||||| |||||  |||| |||||| | ||| |||||||||||||||||| ||| ||||||| ||||    
T  48250153 accacttgtgtaccattaaggtaccaatgatatatatcattggtcaattagagtgtgccacctaccaatgttactttatagatgctttatttgatat 48250249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 403 - 521
Target Start/End: Original strand, 48072389 - 48072504
Alignment:
Q  403 ccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgagacacataccaatgttactttataaatgttttatttaatatatgc 502  Q
    |||||||||||| |||||||||||||  |  |||| |||||| |||| |||||| | |||||  |||||||| ||||||||| |||||||| || |||      
T  48072389 ccacttgtgtactattaaggtaccaa--tagtataccattgatcaattagagtgtgccacatttcaatgttattttataaatattttatttgatgtat-t 48072485  T
Q  503 tttttaaagtgtgtgccac 521  Q
    ||||||||| |||||||||    
T  48072486 tttttaaagggtgtgccac 48072504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 136; Significance: 1e-70; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 398 - 557
Target Start/End: Original strand, 29989957 - 29990116
Alignment:
Q  398 ggacaccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgagacacataccaatgttactttataaatgttttatttaata 497  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |||    
T  29989957 ggacaccacttgtgtaccattaaggtatcaatgttatataacattgaccaataagagtgtgccacataccaatgttactttataaatgttttatttgata 29990056  T
Q  498 tatgctttttaaagtgtgtgccacatgtcacaccttaattgactaatgttatataacata 557  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  29990057 tatgttttttaaagtgtgtgccacatgtcacaccttaattggctaatgttatataacata 29990116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 395 - 557
Target Start/End: Complemental strand, 38010793 - 38010631
Alignment:
Q  395 cacggacaccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgagacacataccaatgttactttataaatgttttattta 494  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||||||||||||||  |||||||     
T  38010793 cacggacaccacttgtgtaccattaaggtaccaatgttatataacattggccaataagagtgtgccacataccaatgttactttataaatactttatttg 38010694  T
Q  495 atatatgctttttaaagtgtgtgccacatgtcacaccttaattgactaatgttatataacata 557  Q
    ||||||| |||||||||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  38010693 atatatgttttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacata 38010631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 397 - 557
Target Start/End: Complemental strand, 13478222 - 13478062
Alignment:
Q  397 cggacaccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgagacacataccaatgttactttataaatgttttatttaat 496  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||| |||||||| ||    
T  13478222 cggacaccacttgtgtaccattaaggaaccaatgttatataacattgaccaataagagtgtgccacataccattgttactttataaatattttatttgat 13478123  T
Q  497 atatgctttttaaagtgtgtgccacatgtcacaccttaattgactaatgttatataacata 557  Q
    ||||| |||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  13478122 atatgttttttaaagtgtgtgccacatgtcacaccttaattagctaatgttatataacata 13478062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 396 - 557
Target Start/End: Original strand, 13015374 - 13015535
Alignment:
Q  396 acggacaccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgagacacataccaatgttactttataaatgttttatttaa 495  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||| |    
T  13015374 acggataccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacataccaatgttactttataaatattttatttga 13015473  T
Q  496 tatatgctttttaaagtgtgtgccacatgtcacaccttaattgactaatgttatataacata 557  Q
    |||||  |||||||||| |||||||||||||||| |||||||| ||||||||||||||||||    
T  13015474 tatatattttttaaagtatgtgccacatgtcacatcttaattggctaatgttatataacata 13015535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 396 - 557
Target Start/End: Original strand, 13086746 - 13086907
Alignment:
Q  396 acggacaccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgagacacataccaatgttactttataaatgttttatttaa 495  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||| |||||||| |    
T  13086746 acggacaccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacataccaatgttattttataaatattttatttga 13086845  T
Q  496 tatatgctttttaaagtgtgtgccacatgtcacaccttaattgactaatgttatataacata 557  Q
    ||| |  |||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  13086846 tatgtattttttaaagtgtgtgccacatgtcacaccttaattagctaatgttatataacata 13086907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 396 - 557
Target Start/End: Complemental strand, 13421188 - 13421027
Alignment:
Q  396 acggacaccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgagacacataccaatgttactttataaatgttttatttaa 495  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||||||| |||||||||||   || ||| ||||||||||||||||||| |||||||||    
T  13421188 acggacatcacttgtgtaccattaaggtatcaatgttatataacattgatcaataagagtgtatcaaatatcaatgttactttataaatgctttatttaa 13421089  T
Q  496 tatatgctttttaaagtgtgtgccacatgtcacaccttaattgactaatgttatataacata 557  Q
    |||||| |||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||    
T  13421088 tatatgttttttaaagtgtatgccacatgacacaccttacttgactaatgttatataacata 13421027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 423 - 556
Target Start/End: Original strand, 10292893 - 10293024
Alignment:
Q  423 taccaatgttatataacattgaccaataagagtgagacacataccaatgttactttataaatgttttatttaatatatgctttttaaagtgtgtgccaca 522  Q
    ||||||||||||||||||||| ||||||||| || | ||| ||| ||||||| ||| ||| |||||||||| |||| |  ||||||||| |||||||||     
T  10292893 taccaatgttatataacattggccaataagaatgtgccacgtactaatgttattttgtaagtgttttatttgatattt--tttttaaagggtgtgccacg 10292990  T
Q  523 tgtcacaccttaattgactaatgttatataacat 556  Q
    || ||||||||||||| | |||||||||||||||    
T  10292991 tggcacaccttaattggccaatgttatataacat 10293024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 403 - 521
Target Start/End: Complemental strand, 11607705 - 11607588
Alignment:
Q  403 ccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgagacacataccaatgttactttataaatgttttatttaatatatgc 502  Q
    |||||||| ||||||||||||||||||| |||||| ||||||||||| | |||| | ||| ||||||| |||||||||||||||||||||| |||||       
T  11607705 ccacttgtataccattaaggtaccaatggtatataccattgaccaattatagtgtgccacctaccaatattactttataaatgttttatttgatata-ct 11607607  T
Q  503 tttttaaagtgtgtgccac 521  Q
    ||||||||| |||||||||    
T  11607606 tttttaaagggtgtgccac 11607588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 408 - 521
Target Start/End: Complemental strand, 33858704 - 33858592
Alignment:
Q  408 tgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgagacacataccaatgttactttataaatgttttatttaatatatgcttttt 507  Q
    ||||||||||||||||||||||  |||||| ||||||||||| | |||| | ||| |||||||||||||||||||||||||||||| |||||   |||||    
T  33858704 tgtgtaccattaaggtaccaatagtatatatcattgaccaattatagtgtgccacctaccaatgttactttataaatgttttatttgatata-ctttttt 33858606  T
Q  508 aaagtgtgtgccac 521  Q
    |||| |||||||||    
T  33858605 aaagggtgtgccac 33858592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 397 - 552
Target Start/End: Original strand, 1826253 - 1826407
Alignment:
Q  397 cggacaccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgagacacataccaatgttactttataaatgttttatttaat 496  Q
    |||| ||||||||||||||||||| ||||||||| |||||| |||||  |||| |||||| | ||| ||||||| ||||||| || ||| ||||||| ||    
T  1826253 cggataccacttgtgtaccattaaagtaccaatggtatataccattggtcaattagagtgtgtcacctaccaatattactttgtagatgctttatttgat 1826352  T
Q  497 atatgctttttaaagtgtgtgccacatgtcacaccttaattgactaatgttatata 552  Q
    ||||  |||||||||| ||||||||||| ||||  ||||||||  |||| ||||||    
T  1826353 atat-ttttttaaagtatgtgccacatggcacattttaattgaacaatgatatata 1826407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 403 - 521
Target Start/End: Complemental strand, 39570214 - 39570097
Alignment:
Q  403 ccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgagacacataccaatgttactttataaatgttttatttaatatatgc 502  Q
    ||||||||||| |||||| ||| ||||| |||||| ||||| ||||| |||||| | ||| |||||||||||||||||||||||||||||| |||||       
T  39570214 ccacttgtgtatcattaaagtatcaatggtatataccattggccaattagagtgtgtcacctaccaatgttactttataaatgttttatttgatata-ct 39570116  T
Q  503 tttttaaagtgtgtgccac 521  Q
    ||||||||| |||||||||    
T  39570115 tttttaaagggtgtgccac 39570097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 403 - 500
Target Start/End: Complemental strand, 19357432 - 19357335
Alignment:
Q  403 ccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgagacacataccaatgttactttataaatgttttatttaatatat 500  Q
    ||||||||||||||||| |||||||||| |||||| ||||| ||||| |||||| | ||| ||||||| |||||||||||||| ||||||| ||||||    
T  19357432 ccacttgtgtaccattagggtaccaatggtatataccattggccaattagagtgtgccacctaccaatattactttataaatgctttatttgatatat 19357335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 447 - 524
Target Start/End: Original strand, 37881185 - 37881262
Alignment:
Q  447 aataagagtgagacacataccaatgttactttataaatgttttatttaatatatgctttttaaagtgtgtgccacatg 524  Q
    |||||||||| | ||||||||||||||||||||||||| |||||||| ||||||| |||| ||| |||||||||||||    
T  37881185 aataagagtgtgccacataccaatgttactttataaatattttatttgatatatgtttttcaaaatgtgtgccacatg 37881262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 403 - 509
Target Start/End: Original strand, 9827788 - 9827894
Alignment:
Q  403 ccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgagacacataccaatgttactttataaatgttttatttaatatatgc 502  Q
    |||||||||||||||||||||||||||| |||||| | ||   |||| ||||||   ||| ||||||| ||||||||||||| |||||||| ||||||      
T  9827788 ccacttgtgtaccattaaggtaccaatggtatatacctttagtcaattagagtgtaccacctaccaatattactttataaatattttatttgatatatct 9827887  T
Q  503 tttttaa 509  Q
    |||||||    
T  9827888 tttttaa 9827894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 397 - 449
Target Start/End: Complemental strand, 35622991 - 35622939
Alignment:
Q  397 cggacaccacttgtgtaccattaaggtaccaatgttatataacattgaccaat 449  Q
    ||||||||||||||||||||||  | |||||||||||||||||||||||||||    
T  35622991 cggacaccacttgtgtaccattgggataccaatgttatataacattgaccaat 35622939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 455 - 521
Target Start/End: Original strand, 42148198 - 42148263
Alignment:
Q  455 tgagacacataccaatgttactttataaatgttttatttaatatatgctttttaaagtgtgtgccac 521  Q
    |||| ||| |||||||||||||||||||||||||||||| ||||||  ||||||||| |||| ||||    
T  42148198 tgagccacctaccaatgttactttataaatgttttatttgatatat-ttttttaaagggtgtaccac 42148263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 419 - 500
Target Start/End: Original strand, 33271630 - 33271711
Alignment:
Q  419 aaggtaccaatgttatataacattgaccaataagagtgagacacataccaatgttactttataaatgttttatttaatatat 500  Q
    |||||||||||| |||||| ||||| ||||| |||||| | ||  || ||||||||||| ||||||| ||||||| ||||||    
T  33271630 aaggtaccaatgatatatatcattggccaattagagtgtgtcatctatcaatgttacttgataaatgctttatttgatatat 33271711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 398 - 443
Target Start/End: Original strand, 35622811 - 35622856
Alignment:
Q  398 ggacaccacttgtgtaccattaaggtaccaatgttatataacattg 443  Q
    |||||||||||||||||||||  | |||||||||||||||||||||    
T  35622811 ggacaccacttgtgtaccattgggataccaatgttatataacattg 35622856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 136; Significance: 1e-70; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 398 - 557
Target Start/End: Complemental strand, 8809816 - 8809657
Alignment:
Q  398 ggacaccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgagacacataccaatgttactttataaatgttttatttaata 497  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||| |||    
T  8809816 ggacaccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacgtaccaatgttactttataaatgttttatttgata 8809717  T
Q  498 tatgctttttaaagtgtgtgccacatgtcacaccttaattgactaatgttatataacata 557  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  8809716 tatgttttttaaagtgtgtgccacatgtcacaccttaattggctaatgttatataacata 8809657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 56 - 289
Target Start/End: Complemental strand, 27685664 - 27685431
Alignment:
Q  56 gcagctatcaaacaatgaagcacatcctggttaccatgatgaagtggacattgagtttcttggaacaacatttggaaagccttatactttgcagaccaat 155  Q
    |||||| || ||||||||||||||||| || |  ||||||||||| |||||||| ||||| || |||||||||||||||||||||||||||||||| |||    
T  27685664 gcagctttctaacaatgaagcacatccaggatttcatgatgaagtagacattgaatttctagggacaacatttggaaagccttatactttgcagacaaat 27685565  T
Q  156 gtttatgtaagagggagtggtgatgggaaaattgtaggtagagaaatgaagtttcatctttggtttgatcctaccaaaggttttcatcactatgctatac 255  Q
    |||||| ||||||||||||||||||| |||||| |||| ||||||||||| |||||||| ||||||||||||||||||   ||||||||||||||||||     
T  27685564 gtttatataagagggagtggtgatggaaaaattataggcagagaaatgaaatttcatctgtggtttgatcctaccaaaaaatttcatcactatgctatag 27685465  T
Q  256 tatggagtcctaaagagataatgtaagtcactgt 289  Q
    | |||| |||||| ||  ||||||||||||||||    
T  27685464 tttggaatcctaaggaattaatgtaagtcactgt 27685431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 400 - 557
Target Start/End: Original strand, 35998249 - 35998406
Alignment:
Q  400 acaccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgagacacataccaatgttactttataaatgttttatttaatata 499  Q
    ||||||||||| |||||||||||||||||||||||||||||||||  |||||||||| | |||||| |||||||| ||||||| |||||||||| |||||    
T  35998249 acaccacttgtataccattaaggtaccaatgttatataacattgattaataagagtgtgccacatatcaatgttattttataagtgttttattttatata 35998348  T
Q  500 tgctttttaaagtgtgtgccacatgtcacaccttaattgactaatgttatataacata 557  Q
    || |||||||||||||||||||||| |||| |||||||| ||||||||||||||||||    
T  35998349 tgttttttaaagtgtgtgccacatggcacatcttaattggctaatgttatataacata 35998406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 410 - 556
Target Start/End: Original strand, 35534413 - 35534555
Alignment:
Q  410 tgtaccattaaggtaccaatgttatataacattgaccaataagagtgagacacataccaatgttactttataaatgttttatttaatatatgctttttaa 509  Q
    |||| ||||||| |||||||||||||||||||||  || | |||||| | ||||||| ||||| | ||||||| |||||||||||||||    |||||||    
T  35534413 tgtatcattaagataccaatgttatataacattggacactgagagtgtgccacatactaatgtcaatttataagtgttttatttaatat----tttttaa 35534508  T
Q  510 agtgtgtgccacatgtcacaccttaattgactaatgttatataacat 556  Q
    || |||||||||||| ||||||||||||| | ||| |||||||||||    
T  35534509 agggtgtgccacatgacacaccttaattggccaatattatataacat 35534555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 397 - 529
Target Start/End: Complemental strand, 29119501 - 29119370
Alignment:
Q  397 cggacaccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgagacacataccaatgttactttataaatgttttatttaat 496  Q
    |||| ||||||||||||||||||||||||||||| |||||| ||||| ||||| |||||| | ||| || || |||||||||||| ||| ||||||| ||    
T  29119501 cggataccacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctatcattgttactttatagatgctttatttgat 29119402  T
Q  497 atatgctttttaaagtgtgtgccacatgtcaca 529  Q
    ||||  ||||||||| |||||||||||| ||||    
T  29119401 atat-ttttttaaagggtgtgccacatggcaca 29119370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 403 - 529
Target Start/End: Original strand, 32676136 - 32676261
Alignment:
Q  403 ccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgagacacataccaatgttactttataaatgttttatttaatatatgc 502  Q
    |||||||||||||||||||||||||||| |||||| ||||| ||||| ||| ||   ||| |||||||||||||||||||||| ||||||| ||||||      
T  32676136 ccacttgtgtaccattaaggtaccaatggtatataccattggccaattagaatgcaccacctaccaatgttactttataaatgctttatttgatatat-t 32676234  T
Q  503 tttttaaagtgtgtgccacatgtcaca 529  Q
    |||||||||  ||||||||||| ||||    
T  32676235 tttttaaagcatgtgccacatggcaca 32676261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 403 - 520
Target Start/End: Original strand, 2569037 - 2569152
Alignment:
Q  403 ccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgagacacataccaatgttactttataaatgttttatttaatatatgc 502  Q
    |||||||||||||||||||||||||||| |||||| ||||  ||||| |||||| | ||| |||||||||||| |||  |||| ||||||| ||||||      
T  2569037 ccacttgtgtaccattaaggtaccaatggtatatatcatttgccaattagagtgtgccacctaccaatgttacattaccaatgctttatttgatatat-- 2569134  T
Q  503 tttttaaagtgtgtgcca 520  Q
    ||||||||| ||||||||    
T  2569135 tttttaaagggtgtgcca 2569152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 403 - 493
Target Start/End: Original strand, 25161309 - 25161399
Alignment:
Q  403 ccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgagacacataccaatgttactttataaatgttttattt 493  Q
    |||||||||||||||||| ||  ||||| |||||| ||||||||||| | |||| | ||| || |||||||||||||||||||||||||||    
T  25161309 ccacttgtgtaccattaaagtctcaatggtatataccattgaccaattacagtgtgccacctaacaatgttactttataaatgttttattt 25161399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 403 - 499
Target Start/End: Original strand, 8462129 - 8462224
Alignment:
Q  403 ccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgagacacataccaatgttactttataaatgttttatttaatata 499  Q
    |||||||||||  ||||| ||||||||| |||||| |||||| |||| | |||| | ||| ||||||||||| ||||||||||||||||||||||||    
T  8462129 ccacttgtgtat-attaaagtaccaatggtatatatcattgatcaattatagtgtgccacctaccaatgttattttataaatgttttatttaatata 8462224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 399 - 449
Target Start/End: Complemental strand, 18056199 - 18056149
Alignment:
Q  399 gacaccacttgtgtaccattaaggtaccaatgttatataacattgaccaat 449  Q
    ||||||||||||||||||||||  |||||||||||||||| ||||||||||    
T  18056199 gacaccacttgtgtaccattaaactaccaatgttatataatattgaccaat 18056149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 404 - 500
Target Start/End: Original strand, 6223052 - 6223148
Alignment:
Q  404 cacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgagacacataccaatgttactttataaatgttttatttaatatat 500  Q
    ||||||||||||||||| ||| |||||||||||| |||||| |||| |  ||| | || ||| |||||||| ||||||| | |||||||| ||||||    
T  6223052 cacttgtgtaccattaaagtatcaatgttatatatcattgatcaattaaggtgtgtcatatatcaatgttattttataagtattttatttgatatat 6223148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 397 - 456
Target Start/End: Complemental strand, 46435630 - 46435571
Alignment:
Q  397 cggacaccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtg 456  Q
    |||| ||||||||||||||||||||||||||||| ||||||  |||| ||||| ||||||    
T  46435630 cggataccacttgtgtaccattaaggtaccaatggtatatacaattggccaattagagtg 46435571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 432 - 493
Target Start/End: Complemental strand, 3688980 - 3688919
Alignment:
Q  432 tatataacattgaccaataagagtgagacacataccaatgttactttataaatgttttattt 493  Q
    |||||| ||||||||||| ||||||    || ||||||||||||||||||||||||||||||    
T  3688980 tatatatcattgaccaattagagtgtacaacctaccaatgttactttataaatgttttattt 3688919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 404 - 449
Target Start/End: Original strand, 5581281 - 5581326
Alignment:
Q  404 cacttgtgtaccattaaggtaccaatgttatataacattgaccaat 449  Q
    |||||||||||||||| | ||| |||||||||||||||||||||||    
T  5581281 cacttgtgtaccattaggatactaatgttatataacattgaccaat 5581326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 404 - 437
Target Start/End: Complemental strand, 16679868 - 16679835
Alignment:
Q  404 cacttgtgtaccattaaggtaccaatgttatata 437  Q
    ||||||||||||||||||||||||||||||||||    
T  16679868 cacttgtgtaccattaaggtaccaatgttatata 16679835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 460 - 493
Target Start/End: Original strand, 8555486 - 8555519
Alignment:
Q  460 cacataccaatgttactttataaatgttttattt 493  Q
    ||||||||||||||| ||||||||||||||||||    
T  8555486 cacataccaatgttattttataaatgttttattt 8555519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 397 - 449
Target Start/End: Original strand, 18056019 - 18056071
Alignment:
Q  397 cggacaccacttgtgtaccattaaggtaccaatgttatataacattgaccaat 449  Q
    ||||||| |||||||||||| |  | || ||||||||||||||||||||||||    
T  18056019 cggacacgacttgtgtaccactgggatatcaatgttatataacattgaccaat 18056071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 132; Significance: 3e-68; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 398 - 557
Target Start/End: Original strand, 52012773 - 52012932
Alignment:
Q  398 ggacaccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgagacacataccaatgttactttataaatgttttatttaata 497  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||| |||    
T  52012773 ggacaccacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaatgttactttataaatgttttatttgata 52012872  T
Q  498 tatgctttttaaagtgtgtgccacatgtcacaccttaattgactaatgttatataacata 557  Q
    |||| |||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  52012873 tatgttttttaaagtgtgtgccacatgtcacaccttaattagctaatgttatataacata 52012932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 402 - 557
Target Start/End: Complemental strand, 9799535 - 9799380
Alignment:
Q  402 accacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgagacacataccaatgttactttataaatgttttatttaatatatg 501  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||| |||| || | ||||||||||||||||||||||||||||||||||||||||||    
T  9799535 accacttgtataccattaaggtaccaatgttatataacattgaccaacaagaatgtgccacataccaatgttactttataaatgttttatttaatatatg 9799436  T
Q  502 ctttttaaagtgtgtgccacatgtcacaccttaattgactaatgttatataacata 557  Q
     ||||||||||||||| |||||||||||||||||||  ||||||||||||||||||    
T  9799435 ttttttaaagtgtgtgtcacatgtcacaccttaattagctaatgttatataacata 9799380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 398 - 546
Target Start/End: Original strand, 47943153 - 47943302
Alignment:
Q  398 ggacaccacttgtgtaccattaaggtaccaatgttatataacatt-gaccaataagagtgagacacataccaatgttactttataaatgttttatttaat 496  Q
    |||||||||||||||||||||||  |||||||||||||||| ||| ||||||||| | || | ||||||||||| ||| ||||||||| |||||||| ||    
T  47943153 ggacaccacttgtgtaccattaaaataccaatgttatataatatttgaccaataaaaatgtgccacataccaatattattttataaatattttatttgat 47943252  T
Q  497 atatgctttttaaagtgtgtgccacatgtcacaccttaattgactaatgt 546  Q
    ||||| |||||||| ||||||||||||||||||||||||||  |||||||    
T  47943253 atatgttttttaaaatgtgtgccacatgtcacaccttaattagctaatgt 47943302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 403 - 552
Target Start/End: Original strand, 21260794 - 21260942
Alignment:
Q  403 ccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgagacacataccaatgttactttataaatgttttatttaatatatgc 502  Q
    |||||| | ||||||||||||||||||| |||||| ||||| ||||| |||||| | ||| |||||||||||||||||||||||||||||| ||||||      
T  21260794 ccacttatataccattaaggtaccaatgatatatatcattggccaattagagtgtgtcacctaccaatgttactttataaatgttttatttgatatat-t 21260892  T
Q  503 tttttaaagtgtgtgccacatgtcacaccttaattgactaatgttatata 552  Q
    ||||||||| |||||||||||| ||||   ||||||  ||||||||||||    
T  21260893 tttttaaagggtgtgccacatggcacattctaattgggtaatgttatata 21260942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 404 - 529
Target Start/End: Complemental strand, 33249544 - 33249420
Alignment:
Q  404 cacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgagacacataccaatgttactttataaatgttttatttaatatatgct 503  Q
    |||||||||||||||||||||| |||| ||||||  |||| ||||| |||||| | ||| |||||||||||||||||||||| ||||||| ||||||  |    
T  33249544 cacttgtgtaccattaaggtacaaatggtatatacaattggccaattagagtgtgtcacctaccaatgttactttataaatgctttatttgatatat-at 33249446  T
Q  504 ttttaaagtgtgtgccacatgtcaca 529  Q
    |||||||| |||||||||||| ||||    
T  33249445 ttttaaagggtgtgccacatggcaca 33249420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 397 - 529
Target Start/End: Original strand, 12473698 - 12473829
Alignment:
Q  397 cggacaccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgagacacataccaatgttactttataaatgttttatttaat 496  Q
    |||| ||||||||| ||||||||||||||||||| |||||| ||||| ||||| |||||| | ||| |||||||||||||||||| ||| ||||||| ||    
T  12473698 cggataccacttgtataccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgat 12473797  T
Q  497 atatgctttttaaagtgtgtgccacatgtcaca 529  Q
    ||||  ||||||||| ||||| |||||| ||||    
T  12473798 atat-ttttttaaagggtgtggcacatgacaca 12473829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 397 - 529
Target Start/End: Original strand, 12528107 - 12528238
Alignment:
Q  397 cggacaccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgagacacataccaatgttactttataaatgttttatttaat 496  Q
    |||| ||||||||| ||||||||||||||||||| |||||| ||||| ||||| |||||| | ||| |||||||||||||||||| ||| ||||||| ||    
T  12528107 cggataccacttgtataccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgat 12528206  T
Q  497 atatgctttttaaagtgtgtgccacatgtcaca 529  Q
    ||||  ||||||||| ||||| |||||| ||||    
T  12528207 atat-ttttttaaagggtgtggcacatgacaca 12528238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 403 - 521
Target Start/End: Complemental strand, 35869742 - 35869625
Alignment:
Q  403 ccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgagacacataccaatgttactttataaatgttttatttaatatatgc 502  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||| | | || | ||| ||||||||||||| |||||||||||||||| |||||       
T  35869742 ccacttgtgtaccattaaggtaccaatggtatataccattgaccaattataatgtgccacctaccaatgttactatataaatgttttatttgatata-ct 35869644  T
Q  503 tttttaaagtgtgtgccac 521  Q
    ||||||||| |||||||||    
T  35869643 tttttaaagggtgtgccac 35869625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 403 - 529
Target Start/End: Original strand, 22343337 - 22343462
Alignment:
Q  403 ccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgagacacataccaatgttactttataaatgttttatttaatatatgc 502  Q
    |||||||||||||||||||||| ||||| |||||| ||||||||||| |||||| | ||  || ||||||||||||||||||| ||||||| ||||||      
T  22343337 ccacttgtgtaccattaaggtatcaatggtatatatcattgaccaattagagtgtgtcatctatcaatgttactttataaatgctttatttgatatat-t 22343435  T
Q  503 tttttaaagtgtgtgccacatgtcaca 529  Q
     ||||||||  ||||||||||| ||||    
T  22343436 attttaaaggatgtgccacatgacaca 22343462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 503 - 557
Target Start/End: Original strand, 46720216 - 46720270
Alignment:
Q  503 tttttaaagtgtgtgccacatgtcacaccttaattgactaatgttatataacata 557  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  46720216 tttttaaagtgtgtgccacatgacacaccttaattgactaatgttatataacata 46720270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 88 - 261
Target Start/End: Complemental strand, 21085105 - 21084932
Alignment:
Q  88 accatgatgaagtggacattgagtttcttggaacaacatttggaaagccttatactttgcagaccaatgtttatgtaagagggagtggtgatgggaaaat 187  Q
    ||||||||||| | |||||||||||||||||||| |||  ||| ||||| |||   || || || ||||| ||| | ||||| ||||| |||||||| ||    
T  21085105 accatgatgaaattgacattgagtttcttggaactacacctggtaagccatatgtgttacaaacaaatgtatatatgagaggaagtggagatgggaacat 21085006  T
Q  188 tgtaggtagagaaatgaagtttcatctttggtttgatcctaccaaaggttttcatcactatgctatactatgga 261  Q
    | |||| ||||| ||| | |||||||||||||||||||| ||  ||| ||||||  |||||||||| |||||||    
T  21085005 tataggaagagagatgcaatttcatctttggtttgatccaactcaagattttcacaactatgctattctatgga 21084932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 426 - 493
Target Start/End: Original strand, 46719953 - 46720020
Alignment:
Q  426 caatgttatataacattgaccaataagagtgagacacataccaatgttactttataaatgttttattt 493  Q
    ||||||||||||||||||||||||||||||| | ||||||| |||||||||||||||||  |||||||    
T  46719953 caatgttatataacattgaccaataagagtgtgccacatacaaatgttactttataaatactttattt 46720020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 404 - 493
Target Start/End: Complemental strand, 52910219 - 52910130
Alignment:
Q  404 cacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgagacacataccaatgttactttataaatgttttattt 493  Q
    |||||||||||||| | ||||||||||||||||| ||||| ||||| | |||| | ||| ||||||| |||||||||||||| |||||||    
T  52910219 cacttgtgtaccataatggtaccaatgttatataccattggccaattaaagtgtgccacctaccaatattactttataaatgctttattt 52910130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 403 - 480
Target Start/End: Original strand, 55590482 - 55590559
Alignment:
Q  403 ccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgagacacataccaatgttactttat 480  Q
    |||||||||||||||||||||||||||| |||||| |||||| |||| | |||| | ||| |||||||||||||||||    
T  55590482 ccacttgtgtaccattaaggtaccaatggtatatatcattgatcaattatagtgtgtcacctaccaatgttactttat 55590559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 403 - 520
Target Start/End: Original strand, 51811914 - 51812030
Alignment:
Q  403 ccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgagacacataccaatgttactttataaatgttttatttaatatatgc 502  Q
    ||||| |||||||||||||||| ||| | ||||||  |||| ||||| |||||  | ||| ||||||||||||||||||||| |||| ||| ||||||      
T  51811914 ccactcgtgtaccattaaggtatcaaagatatatattattggccaattagagtatgccacctaccaatgttactttataaattttttttttgatatat-t 51812012  T
Q  503 tttttaaagtgtgtgcca 520  Q
    ||||||||| ||||||||    
T  51812013 tttttaaagggtgtgcca 51812030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 404 - 500
Target Start/End: Complemental strand, 49999758 - 49999662
Alignment:
Q  404 cacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgagacacataccaatgttactttataaatgttttatttaatatat 500  Q
    |||||||||||||| ||| ||| |||||||| |  |||||  |||| |||||| | ||||||||||||||| |||||||||| ||||||| ||||||    
T  49999758 cacttgtgtaccatcaagatactaatgttatgtgtcattggtcaattagagtgtgtcacataccaatgttattttataaatgctttatttgatatat 49999662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 398 - 449
Target Start/End: Original strand, 28092740 - 28092791
Alignment:
Q  398 ggacaccacttgtgtaccattaaggtaccaatgttatataacattgaccaat 449  Q
    |||||||||||||||||||||  | |||||||||||||||||||||||||||    
T  28092740 ggacaccacttgtgtaccattgggataccaatgttatataacattgaccaat 28092791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 404 - 485
Target Start/End: Complemental strand, 34829253 - 34829172
Alignment:
Q  404 cacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgagacacataccaatgttactttataaatg 485  Q
    ||||| ||||| ||||||||||||||| |||||| || || ||||| | |||| | ||| ||||||||||||||||||||||    
T  34829253 cacttatgtactattaaggtaccaatgatatatatcaatggccaattaaagtgtgtcacctaccaatgttactttataaatg 34829172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 396 - 443
Target Start/End: Complemental strand, 28092921 - 28092874
Alignment:
Q  396 acggacaccacttgtgtaccattaaggtaccaatgttatataacattg 443  Q
    |||||||||||||||||||||||  | |||||||||||||||||||||    
T  28092921 acggacaccacttgtgtaccattgggataccaatgttatataacattg 28092874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 398 - 443
Target Start/End: Complemental strand, 36634574 - 36634529
Alignment:
Q  398 ggacaccacttgtgtaccattaaggtaccaatgttatataacattg 443  Q
    |||||||||||||||||||||  | |||||||||||||||||||||    
T  36634574 ggacaccacttgtgtaccattgggataccaatgttatataacattg 36634529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 398 - 443
Target Start/End: Complemental strand, 54277698 - 54277653
Alignment:
Q  398 ggacaccacttgtgtaccattaaggtaccaatgttatataacattg 443  Q
    |||||||||||||||||||||  | |||||||||||||||||||||    
T  54277698 ggacaccacttgtgtaccattgggataccaatgttatataacattg 54277653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 467 - 497
Target Start/End: Original strand, 1796196 - 1796226
Alignment:
Q  467 caatgttactttataaatgttttatttaata 497  Q
    |||||||||||||||||||||||||||||||    
T  1796196 caatgttactttataaatgttttatttaata 1796226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 469 - 521
Target Start/End: Original strand, 33174581 - 33174630
Alignment:
Q  469 atgttactttataaatgttttatttaatatatgctttttaaagtgtgtgccac 521  Q
    ||||||||||||||||||||||||| |||||   ||||||||| |||||||||    
T  33174581 atgttactttataaatgttttatttgatata---tttttaaagggtgtgccac 33174630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 397 - 443
Target Start/End: Original strand, 36634500 - 36634546
Alignment:
Q  397 cggacaccacttgtgtaccattaaggtaccaatgttatataacattg 443  Q
    |||||||| |||||||||||||  | |||||||||||||||||||||    
T  36634500 cggacaccgcttgtgtaccattgggataccaatgttatataacattg 36634546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 407 - 449
Target Start/End: Original strand, 49998486 - 49998528
Alignment:
Q  407 ttgtgtaccattaaggtaccaatgttatataacattgaccaat 449  Q
    ||||||||||||||||||||||| ||||||| ||||| |||||    
T  49998486 ttgtgtaccattaaggtaccaatattatatatcattggccaat 49998528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 132; Significance: 3e-68; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 398 - 557
Target Start/End: Complemental strand, 31187246 - 31187087
Alignment:
Q  398 ggacaccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgagacacataccaatgttactttataaatgttttatttaata 497  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |||    
T  31187246 ggacaccacttatgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacataccaatgttactttataaatgttttatttgata 31187147  T
Q  498 tatgctttttaaagtgtgtgccacatgtcacaccttaattgactaatgttatataacata 557  Q
    |||  |||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  31187146 tatattttttaaagtgtgtgccacatgtcacaccttaattggctaatgttatataacata 31187087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 398 - 557
Target Start/End: Original strand, 42664668 - 42664827
Alignment:
Q  398 ggacaccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgagacacataccaatgttactttataaatgttttatttaata 497  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||| |||    
T  42664668 ggacaccacttgtgtaccattaaggtaccaaagttatataacattgaccaataagagtgtgccacataccaatgttattttataaatgttttatttgata 42664767  T
Q  498 tatgctttttaaagtgtgtgccacatgtcacaccttaattgactaatgttatataacata 557  Q
    |||| |||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  42664768 tatgttttttaaagtgtgtgccacatgtcacaccttaattagctaatgttatataacata 42664827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 398 - 557
Target Start/End: Original strand, 47186170 - 47186329
Alignment:
Q  398 ggacaccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgagacacataccaatgttactttataaatgttttatttaata 497  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||||||||||||||  ||||||| |||    
T  47186170 ggacaccacttgtgtaccattaaggtaccaatgttatataacattggccaataagagtgtgccacataccaatgttactttataaatactttatttgata 47186269  T
Q  498 tatgctttttaaagtgtgtgccacatgtcacaccttaattgactaatgttatataacata 557  Q
    |||| |||||||||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  47186270 tatgttttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacata 47186329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 399 - 557
Target Start/End: Complemental strand, 34029466 - 34029308
Alignment:
Q  399 gacaccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgagacacataccaatgttactttataaatgttttatttaatat 498  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| | ||||||| |||||||||||||||||||||||||| ||||    
T  34029466 gacaccacttgtttaccattaaggtaccaatgttatataacattgatcaataagagtgtgccacatactaatgttactttataaatgttttatttgatat 34029367  T
Q  499 atgctttttaaagtgtgtgccacatgtcacaccttaattgactaatgttatataacata 557  Q
    ||| ||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||    
T  34029366 atgttttttaaagtgtgtgtcacatatcacaccttaattggctaatgttatataacata 34029308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 402 - 524
Target Start/End: Original strand, 47426349 - 47426470
Alignment:
Q  402 accacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgagacacataccaatgttactttataaatgttttatttaatatatg 501  Q
    ||||||||||||||||||||||||||||  |||||| ||||| ||||| |||||| | ||| || ||||||||||||||| ||| ||||||| ||||||     
T  47426349 accacttgtgtaccattaaggtaccaatagtatataccattggccaattagagtgtgtcacctatcaatgttactttatagatgctttatttgatatat- 47426447  T
Q  502 ctttttaaagtgtgtgccacatg 524  Q
     ||||||||| ||||||||||||    
T  47426448 ttttttaaagggtgtgccacatg 47426470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 404 - 500
Target Start/End: Original strand, 50934501 - 50934597
Alignment:
Q  404 cacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgagacacataccaatgttactttataaatgttttatttaatatat 500  Q
    ||||||||||||||||||||||||||| |||||| ||||| ||||| |||||| | ||| ||||||||||||||||||||||  |||||| ||||||    
T  50934501 cacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacttaccaatgttactttataaatgcattatttgatatat 50934597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 403 - 521
Target Start/End: Original strand, 44380254 - 44380371
Alignment:
Q  403 ccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgagacacataccaatgttactttataaatgttttatttaatatatgc 502  Q
    |||||||||||||||||||||||||||| ||||||  |||||||||| | |||| | ||| || |||| |||||||||||||| ||||||| |||||       
T  44380254 ccacttgtgtaccattaaggtaccaatggtatatactattgaccaattatagtgtgtcacctatcaatattactttataaatgctttatttgatata-ct 44380352  T
Q  503 tttttaaagtgtgtgccac 521  Q
    ||||||||| |||||||||    
T  44380353 tttttaaagggtgtgccac 44380371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 398 - 456
Target Start/End: Complemental strand, 21963131 - 21963073
Alignment:
Q  398 ggacaccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtg 456  Q
    ||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||    
T  21963131 ggacatcacttatgtaccattaaggtatcaatgttatataacattgaccaataagagtg 21963073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 407 - 529
Target Start/End: Original strand, 33509684 - 33509805
Alignment:
Q  407 ttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgagacacataccaatgttactttataaatgttttatttaatatatgctttt 506  Q
    ||||||||||||||||||| |||  |||||| ||||||||||| |||||| | ||| ||||||| |||||||||| ||| ||||||| || |||  ||||    
T  33509684 ttgtgtaccattaaggtactaatagtatatatcattgaccaattagagtgtgccacctaccaatattactttatagatgctttatttgatgtat-ttttt 33509782  T
Q  507 taaagtgtgtgccacatgtcaca 529  Q
    |||||  ||||||||||| ||||    
T  33509783 taaaggatgtgccacatggcaca 33509805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 398 - 449
Target Start/End: Original strand, 46489652 - 46489703
Alignment:
Q  398 ggacaccacttgtgtaccattaaggtaccaatgttatataacattgaccaat 449  Q
    |||||||||||||||||||||  | |||||||||||||||||||||||||||    
T  46489652 ggacaccacttgtgtaccattgggataccaatgttatataacattgaccaat 46489703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 397 - 449
Target Start/End: Original strand, 53440540 - 53440592
Alignment:
Q  397 cggacaccacttgtgtaccattaaggtaccaatgttatataacattgaccaat 449  Q
    ||||||||||||||||||||||  | |||||||||||||||||| ||||||||    
T  53440540 cggacaccacttgtgtaccattgggataccaatgttatataacactgaccaat 53440592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 396 - 443
Target Start/End: Complemental strand, 6053780 - 6053733
Alignment:
Q  396 acggacaccacttgtgtaccattaaggtaccaatgttatataacattg 443  Q
    |||||||||||||||||||||||  | |||||||||||||||||||||    
T  6053780 acggacaccacttgtgtaccattgggataccaatgttatataacattg 6053733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 405 - 456
Target Start/End: Complemental strand, 32319534 - 32319483
Alignment:
Q  405 acttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtg 456  Q
    |||||||||||||||||||||||||| |||||| ||||| ||||| ||||||    
T  32319534 acttgtgtaccattaaggtaccaatggtatataccattggccaattagagtg 32319483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 398 - 449
Target Start/End: Original strand, 34955068 - 34955119
Alignment:
Q  398 ggacaccacttgtgtaccattaaggtaccaatgttatataacattgaccaat 449  Q
    |||||||||||||||||||||  | ||||||||||||||||||||| |||||    
T  34955068 ggacaccacttgtgtaccattgggataccaatgttatataacattggccaat 34955119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 404 - 451
Target Start/End: Original strand, 43689404 - 43689451
Alignment:
Q  404 cacttgtgtaccattaaggtaccaatgttatataacattgaccaataa 451  Q
    |||||||||||||||  | |||||||||||||||||||||||||||||    
T  43689404 cacttgtgtaccattgtgataccaatgttatataacattgaccaataa 43689451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 398 - 449
Target Start/End: Complemental strand, 53440720 - 53440669
Alignment:
Q  398 ggacaccacttgtgtaccattaaggtaccaatgttatataacattgaccaat 449  Q
    ||||||| |||||||||||||| | |||||||||||||||||||||| ||||    
T  53440720 ggacacctcttgtgtaccattaggataccaatgttatataacattgatcaat 53440669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 403 - 469
Target Start/End: Complemental strand, 10018737 - 10018671
Alignment:
Q  403 ccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgagacacataccaa 469  Q
    |||||||||||||||||| |||||||||||||||| |||||  |||||| |||| | ||| ||||||    
T  10018737 ccacttgtgtaccattaaagtaccaatgttatataccattggtcaataaaagtgtgccacctaccaa 10018671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 405 - 499
Target Start/End: Complemental strand, 39498838 - 39498744
Alignment:
Q  405 acttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgagacacataccaatgttactttataaatgttttatttaatata 499  Q
    |||||||||||||||| ||||||||| ||||||  ||||  |||| | |||| | ||| || | |||||| ||||||||| ||||||||||||||    
T  39498838 acttgtgtaccattaaagtaccaatgatatatattattggtcaattaaagtgtgtcacctatcgatgttattttataaatattttatttaatata 39498744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 416 - 521
Target Start/End: Original strand, 37742738 - 37742842
Alignment:
Q  416 attaaggtaccaatgttatataacattgaccaataagagtgagacacataccaatgttactttataaatgttttatttaatatatgctttttaaagtgtg 515  Q
    ||||||||||||||| |||||| |||||  |||| |||||  | ||| |||||||||||| |||  |||| ||||||| ||||||  ||||||||| |||    
T  37742738 attaaggtaccaatggtatatatcattggtcaattagagtatgccacctaccaatgttacattaccaatgctttatttgatatat-ttttttaaagagtg 37742836  T
Q  516 tgccac 521  Q
    ||||||    
T  37742837 tgccac 37742842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 398 - 443
Target Start/End: Original strand, 42273329 - 42273374
Alignment:
Q  398 ggacaccacttgtgtaccattaaggtaccaatgttatataacattg 443  Q
    |||||||||||||||||||||  | |||||||||||||||||||||    
T  42273329 ggacaccacttgtgtaccattgggataccaatgttatataacattg 42273374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 398 - 443
Target Start/End: Complemental strand, 46489831 - 46489786
Alignment:
Q  398 ggacaccacttgtgtaccattaaggtaccaatgttatataacattg 443  Q
    |||||||||||||||||||||  | |||||||||||||||||||||    
T  46489831 ggacaccacttgtgtaccattgggataccaatgttatataacattg 46489786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 411 - 500
Target Start/End: Original strand, 35094554 - 35094645
Alignment:
Q  411 gtaccattaaggtaccaatgttatataacattgaccaataa--gagtgagacacataccaatgttactttataaatgttttatttaatatat 500  Q
    |||||||||| |||||| || |||||| ||||||| ||| |  ||||  | ||| ||||||||||||||||||||| |||||||| ||||||    
T  35094554 gtaccattaaagtaccagtggtatataccattgactaattatagagtatgccacctaccaatgttactttataaatattttatttgatatat 35094645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 403 - 469
Target Start/End: Complemental strand, 10179934 - 10179868
Alignment:
Q  403 ccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgagacacataccaa 469  Q
    |||||||||||||||||| ||||||||| |||||| |||||  |||| |||||| | ||| ||||||    
T  10179934 ccacttgtgtaccattaaagtaccaatggtatataccattggtcaattagagtgtgccacctaccaa 10179868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 426 - 456
Target Start/End: Complemental strand, 22136957 - 22136927
Alignment:
Q  426 caatgttatataacattgaccaataagagtg 456  Q
    |||||||||||||||||||||||||||||||    
T  22136957 caatgttatataacattgaccaataagagtg 22136927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 443
Target Start/End: Complemental strand, 34955251 - 34955206
Alignment:
Q  398 ggacaccacttgtgtaccattaaggtaccaatgttatataacattg 443  Q
    ||||||||||||| ||||||| || || ||||||||||||||||||    
T  34955251 ggacaccacttgtctaccattgagatatcaatgttatataacattg 34955206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 110; Significance: 4e-55; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 396 - 553
Target Start/End: Original strand, 34245560 - 34245717
Alignment:
Q  396 acggacaccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgagacacataccaatgttactttataaatgttttatttaa 495  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||||||| |||| | ||| |||||||||||||||||||||  ||||||| |    
T  34245560 acggacaccacttgtgtaccattaaggtattaatgttatataacattgaccaataaaagtgtgccacgtaccaatgttactttataaatactttatttga 34245659  T
Q  496 tatatgctttttaaagtgtgtgccacatgtcacaccttaattgactaatgttatataa 553  Q
    |||||| |||||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  34245660 tatatgttttttaaagtgtgtgccacatgacacaccttaattggctaatgttatataa 34245717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 404 - 552
Target Start/End: Original strand, 11113557 - 11113700
Alignment:
Q  404 cacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgagacacataccaatgttactttataaatgttttatttaatatatgct 503  Q
    ||||||||||||||||||||||||||| |||||||||||||| |||||||||| | ||||||| ||||||||||| ||| || ||||||| ||      |    
T  11113557 cacttgtgtaccattaaggtaccaatgctatataacattgactaataagagtgtgtcacatactaatgttactttgtaagtgctttatttgat-----tt 11113651  T
Q  504 ttttaaagtgtgtgccacatgtcacaccttaattgactaatgttatata 552  Q
    ||||||||  || |||||||| ||||||||||||||| |||||||||||    
T  11113652 ttttaaaggatgcgccacatggcacaccttaattgaccaatgttatata 11113700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 402 - 500
Target Start/End: Complemental strand, 5404048 - 5403950
Alignment:
Q  402 accacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgagacacataccaatgttactttataaatgttttatttaatatat 500  Q
    |||||||||||||||||||||||| |||| ||||||  ||||  || | |||||  | ||| |||||||||||||||||| ||||||||||| ||||||    
T  5404048 accacttgtgtaccattaaggtactaatggtatatattattggtcagttagagtctgccacctaccaatgttactttatagatgttttatttgatatat 5403950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 404 - 521
Target Start/End: Complemental strand, 1212014 - 1211898
Alignment:
Q  404 cacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgagacacataccaatgttactttataaatgttttatttaatatatgct 503  Q
    ||||||||||||||||||||||||||| |||||| ||||| | ||| || ||| | ||| |  ||||||||||||||  ||| ||||||| ||||||  |    
T  1212014 cacttgtgtaccattaaggtaccaatggtatataccattggctaattagtgtgtgccacctttcaatgttactttatcgatgctttatttgatatat-tt 1211916  T
Q  504 ttttaaagtgtgtgccac 521  Q
    |||||||| |||||||||    
T  1211915 ttttaaagggtgtgccac 1211898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 402 - 456
Target Start/End: Original strand, 11753166 - 11753220
Alignment:
Q  402 accacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtg 456  Q
    ||||||||||||||||||||||||||||| |||||| ||| | ||||| ||||||    
T  11753166 accacttgtgtaccattaaggtaccaatggtatataccatcggccaattagagtg 11753220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 398 - 443
Target Start/End: Complemental strand, 12800423 - 12800378
Alignment:
Q  398 ggacaccacttgtgtaccattaaggtaccaatgttatataacattg 443  Q
    |||||||||||||||||||||  | |||||||||||||||||||||    
T  12800423 ggacaccacttgtgtaccattgggataccaatgttatataacattg 12800378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 443
Target Start/End: Complemental strand, 29879424 - 29879379
Alignment:
Q  398 ggacaccacttgtgtaccattaaggtaccaatgttatataacattg 443  Q
    |||||||||||||||||||||  | |||||||| ||||||||||||    
T  29879424 ggacaccacttgtgtaccattgggataccaatgctatataacattg 29879379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 405 - 445
Target Start/End: Complemental strand, 7234529 - 7234489
Alignment:
Q  405 acttgtgtaccattaaggtaccaatgttatataacattgac 445  Q
    ||||||||| |||||||||||||| |||||||| |||||||    
T  7234529 acttgtgtatcattaaggtaccaacgttatatatcattgac 7234489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 109; Significance: 1e-54; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 395 - 551
Target Start/End: Original strand, 1514795 - 1514951
Alignment:
Q  395 cacggacaccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgagacacataccaatgttactttataaatgttttattta 494  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||   ||||||||||||||||||||||||||||||||||     
T  1514795 cacggacaccacttgtgtaccattaaggtaccaatgttatataacattgatcaataagagtgtaccacataccaatgttactttataaatgttttatttg 1514894  T
Q  495 atatatgctttttaaagtgtgtgccacatgtcacaccttaattgactaatgttatat 551  Q
    ||||||  |||||||| ||||| ||| |||||||||||||||||  |||||||||||    
T  1514895 atatatattttttaaaatgtgtaccatatgtcacaccttaattggttaatgttatat 1514951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 403 - 529
Target Start/End: Complemental strand, 41179734 - 41179609
Alignment:
Q  403 ccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgagacacataccaatgttactttataaatgttttatttaatatatgc 502  Q
    |||||||||||||||||||||||||||| |||||| ||||| ||||| | |||| | ||| |||| ||||||||||||||||||||||||||||||||      
T  41179734 ccacttgtgtaccattaaggtaccaatgatatatatcattggccaattaaagtgtgtcacctaccgatgttactttataaatgttttatttaatatat-t 41179636  T
Q  503 tttttaaagtgtgtgccacatgtcaca 529  Q
    ||||||| |  ||||||||||| ||||    
T  41179635 tttttaatggatgtgccacatggcaca 41179609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 410 - 521
Target Start/End: Original strand, 18168392 - 18168503
Alignment:
Q  410 tgtaccattaaggtaccaatgttatataacattgaccaataagagtgagacacataccaatgttactttataaatgttttatttaatatatgctttttaa 509  Q
    ||||||||||||||||||||| |||||| |||||| |||| ||||||   ||| ||||||| |||||||||||||  ||||||| ||||||  |||||||    
T  18168392 tgtaccattaaggtaccaatggtatatatcattgatcaattagagtgtcccacctaccaatcttactttataaatactttatttgatatattttttttaa 18168491  T
Q  510 agtgtgtgccac 521  Q
    ||  ||||||||    
T  18168492 aggatgtgccac 18168503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 410 - 521
Target Start/End: Original strand, 18631949 - 18632060
Alignment:
Q  410 tgtaccattaaggtaccaatgttatataacattgaccaataagagtgagacacataccaatgttactttataaatgttttatttaatatatgctttttaa 509  Q
    ||||||||||||||||||||| |||||| |||||| |||| ||||||   ||| ||||||| |||||||||||||  ||||||| ||||||  |||||||    
T  18631949 tgtaccattaaggtaccaatggtatatatcattgatcaattagagtgtcccacctaccaatcttactttataaatactttatttgatatattttttttaa 18632048  T
Q  510 agtgtgtgccac 521  Q
    ||  ||||||||    
T  18632049 aggatgtgccac 18632060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 402 - 523
Target Start/End: Complemental strand, 24338002 - 24337882
Alignment:
Q  402 accacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgagacacataccaatgttactttataaatgttttatttaatatatg 501  Q
    ||||||||||||| ||||||||| ||||| |||||| ||| |  |||| |||||| | ||  |||||||||||||||||| ||| ||||||| ||||||     
T  24338002 accacttgtgtactattaaggtagcaatggtatataccatcggtcaattagagtgtgccatctaccaatgttactttatagatgctttatttgatatat- 24337904  T
Q  502 ctttttaaagtgtgtgccacat 523  Q
     ||||||||| |||||||||||    
T  24337903 atttttaaagggtgtgccacat 24337882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 404 - 556
Target Start/End: Complemental strand, 32826005 - 32825854
Alignment:
Q  404 cacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgagacacataccaatgttactttataaatgttttatttaatatatgct 503  Q
    ||||||||||||||||| ||| ||||||| |||| ||||| ||||| |||||  | |||||| |||||||| ||||||  |||||||||| ||||||  |    
T  32826005 cacttgtgtaccattaaagtatcaatgttgtataccattggccaattagagtatgtcacatatcaatgttattttatatgtgttttatttgatatat-tt 32825907  T
Q  504 ttttaaagtgtgtgccacatgtcacaccttaattgactaatgttatataacat 556  Q
    ||| ||||  |||| |||||| |||| |||||||| | |||  ||||||||||    
T  32825906 tttaaaaggttgtgtcacatgacacatcttaattggccaattatatataacat 32825854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 411 - 521
Target Start/End: Complemental strand, 4708470 - 4708361
Alignment:
Q  411 gtaccattaaggtaccaatgttatataacattgaccaataagagtgagacacataccaatgttactttataaatgttttatttaatatatgctttttaaa 510  Q
    |||||| |||||||||||||  ||||| |||   ||||| | |||| | ||| |||||||||||||||||||||||||||||| ||||||  ||||||||    
T  4708470 gtaccactaaggtaccaatggcatatatcatgcgccaattaaagtgtgtcacctaccaatgttactttataaatgttttatttgatatat-atttttaaa 4708372  T
Q  511 gtgtgtgccac 521  Q
    | |||||||||    
T  4708371 gggtgtgccac 4708361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 403 - 521
Target Start/End: Complemental strand, 11254198 - 11254082
Alignment:
Q  403 ccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgagacacataccaatgttactttataaatgttttatttaatatatgc 502  Q
    ||||||||||||||||||  |||||||| |||||| ||||||||| ||  |||    ||| |||||||||||||||||||||||||||||| |||||       
T  11254198 ccacttgtgtaccattaaattaccaatgatatatatcattgaccattat-agtataccacctaccaatgttactttataaatgttttatttgatata-ca 11254101  T
Q  503 tttttaaagtgtgtgccac 521  Q
    ||||||||| |||||||||    
T  11254100 tttttaaagggtgtgccac 11254082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 398 - 445
Target Start/End: Complemental strand, 40530585 - 40530538
Alignment:
Q  398 ggacaccacttgtgtaccattaaggtaccaatgttatataacattgac 445  Q
    |||||||||||||||| |||| || |||||||||||||||||||||||    
T  40530585 ggacaccacttgtgtaacattgagataccaatgttatataacattgac 40530538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 1e-36; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 398 - 557
Target Start/End: Original strand, 10163471 - 10163636
Alignment:
Q  398 ggacaccacttgtgtaccattaaggtac------caatgttatataacattgaccaataagagtgagacacataccaatgttactttataaatgttttat 491  Q
    ||||||||||| ||||||||||||||||      |||||||||||||||||||||||||| | || | |||||||  || |||||||||||||  |||||    
T  10163471 ggacaccacttatgtaccattaaggtacctgtaccaatgttatataacattgaccaataaaaatgtgccacatactgatattactttataaataatttat 10163570  T
Q  492 ttaatatatgctttttaaagtgtgtgccacatgtcacaccttaattgactaatgttatataacata 557  Q
    || ||||||| |||||||||| ||||| ||||| || |||||||||||||||||||||||||||||    
T  10163571 ttgatatatgttttttaaagtatgtgctacatggcataccttaattgactaatgttatataacata 10163636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 403 - 529
Target Start/End: Complemental strand, 34392252 - 34392127
Alignment:
Q  403 ccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgagacacataccaatgttactttataaatgttttatttaatatatgc 502  Q
    |||||||||||||||| ||||||||||| |||||| ||||| ||||| |||||| | ||| ||||||| |||||||||||||| ||||||| ||||||      
T  34392252 ccacttgtgtaccattgaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatcttactttataaatgctttatttgatatat-t 34392154  T
Q  503 tttttaaagtgtgtgccacatgtcaca 529  Q
    ||||||||| |||||||||||| ||||    
T  34392153 tttttaaagggtgtgccacatggcaca 34392127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 403 - 499
Target Start/End: Original strand, 21603959 - 21604055
Alignment:
Q  403 ccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgagacacataccaatgttactttataaatgttttatttaatata 499  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||| | ||||   ||| |||||||||||||||||||||||||||||| |||||    
T  21603959 ccacttgtgtaccattaaggtaccaatggtatataccattgaccaattatagtgtatcacctaccaatgttactttataaatgttttatttgatata 21604055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 403 - 498
Target Start/End: Complemental strand, 37358092 - 37357997
Alignment:
Q  403 ccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgagacacataccaatgttactttataaatgttttatttaatat 498  Q
    ||||||||||| |||||||||||||||| |||||| ||||||| ||| |||||| | ||| || ||||||||||||||||||| ||||||||||||    
T  37358092 ccacttgtgtatcattaaggtaccaatgatatataccattgactaattagagtgtgtcacctatcaatgttactttataaatgctttatttaatat 37357997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 406 - 500
Target Start/End: Original strand, 7381695 - 7381789
Alignment:
Q  406 cttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgagacacataccaatgttactttataaatgttttatttaatatat 500  Q
    ||||||||||||||||||||||||| ||||||  |||| ||||| |||||| | ||  |||||||||||||||||||||  ||||||| ||||||    
T  7381695 cttgtgtaccattaaggtaccaatggtatatactattggccaattagagtgtgccatctaccaatgttactttataaattctttatttgatatat 7381789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 472 - 553
Target Start/End: Complemental strand, 3668112 - 3668031
Alignment:
Q  472 ttactttataaatgttttatttaatatatgctttttaaagtgtgtgccacatgtcacaccttaattgactaatgttatataa 553  Q
    ||||||||||| || ||||||| ||||||| ||||||||||| |||||||||| |||| |||||||| ||||| ||||||||    
T  3668112 ttactttataagtgctttattttatatatgttttttaaagtgagtgccacatggcacatcttaattggctaatattatataa 3668031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 417 - 529
Target Start/End: Complemental strand, 23863958 - 23863849
Alignment:
Q  417 ttaaggtaccaatgttatataacattgaccaataagagtgagacacataccaatgttactttataaatgttttatttaatatatgctttttaaagtgtgt 516  Q
    |||||||||||||| ||||| |  |||  |||| |||||| | ||| |||||||||||||||||||||| ||||||| ||||||  ||||||||| ||||    
T  23863958 ttaaggtaccaatggtatatta--ttggtcaattagagtgtgccacctaccaatgttactttataaatgctttatttgatatat-atttttaaagggtgt 23863862  T
Q  517 gccacatgtcaca 529  Q
    |||||||| ||||    
T  23863861 gccacatggcaca 23863849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 402 - 538
Target Start/End: Original strand, 4775633 - 4775769
Alignment:
Q  402 accacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgagacacataccaatgttacttta-taaatgttttatttaatatat 500  Q
    ||||||| |||||||||||| |||||||| ||||||  |||| ||||| ||| ||   ||  ||||||| |||||||| ||| |||||||||||||||||    
T  4775633 accacttatgtaccattaagctaccaatgatatatattattggccaattagaatgtctcatctaccaatcttactttattaattgttttatttaatatat 4775732  T
Q  501 gctttttaaagtgtgtgccacatgtcacaccttaattg 538  Q
      |||||||||  ||||||||||| ||||  |||||||    
T  4775733 -ttttttaaaggatgtgccacatggcacaatttaattg 4775769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 398 - 449
Target Start/End: Original strand, 37811086 - 37811137
Alignment:
Q  398 ggacaccacttgtgtaccattaaggtaccaatgttatataacattgaccaat 449  Q
    |||||||||||||||||||||  | ||||||||||||||||||||| |||||    
T  37811086 ggacaccacttgtgtaccattgggataccaatgttatataacattggccaat 37811137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 408 - 482
Target Start/End: Complemental strand, 14566019 - 14565945
Alignment:
Q  408 tgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgagacacataccaatgttactttataa 482  Q
    ||||||||| |||||||||||||||||||| |||||| |||  |||||| |  |||||||||| ||| |||||||    
T  14566019 tgtgtaccactaaggtaccaatgttatatatcattgatcaagtagagtgtgctacataccaatattattttataa 14565945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 407 - 444
Target Start/End: Complemental strand, 3668383 - 3668346
Alignment:
Q  407 ttgtgtaccattaaggtaccaatgttatataacattga 444  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  3668383 ttgtgtatcattaaggtaccaatgttatataacattga 3668346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 398 - 449
Target Start/End: Complemental strand, 37811265 - 37811214
Alignment:
Q  398 ggacaccacttgtgtaccattaaggtaccaatgttatataacattgaccaat 449  Q
    ||||||| |||||||||||||  | |||||||||||||||||||||| ||||    
T  37811265 ggacacctcttgtgtaccattgggataccaatgttatataacattgatcaat 37811214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 464 - 552
Target Start/End: Complemental strand, 41095896 - 41095809
Alignment:
Q  464 taccaatgttactttataaatgttttatttaatatatgctttttaaagtgtgtgccacatgtcacaccttaattgactaatgttatata 552  Q
    |||||||||||||||||||||| ||||||| ||| ||  ||||||||  || ||||||||| |||||| ||| || | |||| ||||||    
T  41095896 taccaatgttactttataaatgctttatttgatagat-ttttttaaaaggtatgccacatggcacaccctaaatggccaatggtatata 41095809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 403 - 552
Target Start/End: Original strand, 34194 - 34341
Alignment:
Q  403 ccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgagacacataccaatgttactttataaatgttttatttaatatatgc 502  Q
    |||||||||||||||||||||||||||| ||||||  |||| ||||| |||||| | ||| ||||||| ||||||||||||| |||||||| ||||||      
T  34194 ccacttgtgtaccattaaggtaccaatggtatatattattggccaattagagtgtgccacttaccaatattactttataaatattttatttgatatat-- 34291  T
Q  503 tttttaaagtgtgtgccacatgtcacaccttaattgactaatgttatata 552  Q
    ||||||||| ||||| ||| || ||||   ||||||  ||||||||||||    
T  34292 tttttaaagggtgtgtcacgtgacacattctaattggataatgttatata 34341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 403 - 521
Target Start/End: Original strand, 11195 - 11311
Alignment:
Q  403 ccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgagacacataccaatgttactttataaatgttttatttaatatatgc 502  Q
    ||||||||||||||||||  |||||||| |||||| ||||||||| ||  |||    ||| |||||||||||||||||||||||||||||| |||||       
T  11195 ccacttgtgtaccattaaattaccaatgatatatatcattgaccattat-agtataccacctaccaatgttactttataaatgttttatttgatata-ca 11292  T
Q  503 tttttaaagtgtgtgccac 521  Q
    ||||||||| |||||||||    
T  11293 tttttaaagggtgtgccac 11311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 404 - 500
Target Start/End: Complemental strand, 13176 - 13080
Alignment:
Q  404 cacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgagacacataccaatgttactttataaatgttttatttaatatat 500  Q
    ||||||||||||||||||||||||||| |||||| ||||| | ||| || ||| | ||| |  ||||||||||||||  ||| ||||||| ||||||    
T  13176 cacttgtgtaccattaaggtaccaatggtatataccattggctaattagtgtgtgccacctttcaatgttactttatcgatgctttatttgatatat 13080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 404 - 500
Target Start/End: Complemental strand, 23263 - 23173
Alignment:
Q  404 cacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgagacacataccaatgttactttataaatgttttatttaatatat 500  Q
    |||||||||||||||||||||| |      |||| ||||| ||||| |||||| | ||| ||||||| ||||||||||||| |||||||| ||||||    
T  23263 cacttgtgtaccattaaggtacga------tatatcattggccaattagagtgtgccacctaccaattttactttataaatattttatttgatatat 23173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 401 - 451
Target Start/End: Original strand, 6422 - 6472
Alignment:
Q  401 caccacttgtgtaccattaaggtaccaatgttatataacattgaccaataa 451  Q
    ||||||||||||||||||  | || |||||||||||||||||| |||||||    
T  6422 caccacttgtgtaccattgggatatcaatgttatataacattggccaataa 6472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0163 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 397 - 443
Target Start/End: Complemental strand, 28165 - 28119
Alignment:
Q  397 cggacaccacttgtgtaccattaaggtaccaatgttatataacattg 443  Q
    |||||||||||||||||||||| || |||| ||||||||||| ||||    
T  28165 cggacaccacttgtgtaccattgagataccgatgttatataatattg 28119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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