View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15781_low_6 (Length: 353)
Name: NF15781_low_6
Description: NF15781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15781_low_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 18548180 - 18547880
Alignment:
| Q |
1 |
gtatgggagatgagtttttgaatggttgtttggtaacatacattgagagtgatatatttgatagtgttgaaaatgnnnnnnntcttgcaacgctttcaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
18548180 |
gtatgggagatgagtttttgaatggttgtttggtaacatacattgagagtgatatatttgatagtgttgaaaatgaaaaaa-tcttgcaacgctttcaaa |
18548082 |
T |
|
| Q |
101 |
atatgacgtcacgaagagggaaattgtaattcttcgtgtctttagttttttgatatagtcatatactttttgtaattttcactattttgcttaatggtaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
18548081 |
atatgacgtcacgaagagggaaattgtaattcttcgtgtctttagttttttgatatagtcatatactttttgtaattttcactattttacttaatggtaa |
18547982 |
T |
|
| Q |
201 |
tgacttcatcattttaatggttatggttttatatatttttgtttaaatatttatgataaacgatcttgaccccgctttctgaaatttctggatccgtccc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
18547981 |
tgacttcatcattttaatggttatggttttatatatttttgtttaaatatttatgataaacgatcttgaccccactttatgaaatttctggatccgtccc |
18547882 |
T |
|
| Q |
301 |
tg |
302 |
Q |
| |
|
|| |
|
|
| T |
18547881 |
tg |
18547880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 198 - 302
Target Start/End: Original strand, 2981095 - 2981199
Alignment:
| Q |
198 |
taatgacttcatcattttaatggttatggttttatatatttttgtttaaatatttatgataaacgatcttgaccccgctttctgaaatttctggatccgt |
297 |
Q |
| |
|
||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
2981095 |
taatgacgttatcattttaatggttatggttttatatatttttgtataaatatttatgacaaacgatcttgaccccactttctgaaatttctggatccgt |
2981194 |
T |
|
| Q |
298 |
ccctg |
302 |
Q |
| |
|
||||| |
|
|
| T |
2981195 |
ccctg |
2981199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 83 - 171
Target Start/End: Original strand, 2980734 - 2980822
Alignment:
| Q |
83 |
tcttgcaacgctttcaaaatatgacgtcacgaagagggaaattgtaattcttcgtgtctttagttttttgatatagtcatatacttttt |
171 |
Q |
| |
|
|||| |||| |||||||||||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
2980734 |
tcttacaacactttcaaaatatgatgtcacgaagaggacaattgtaattcttcgtgtatttagttttttgatatagtcatatacttttt |
2980822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 185 - 303
Target Start/End: Original strand, 12252500 - 12252618
Alignment:
| Q |
185 |
ttttgcttaatggtaatgacttcatcattttaatggttatggttttatatatttttgtttaaatatttatgataaacgatcttgaccccgctttctgaaa |
284 |
Q |
| |
|
||||| |||||| |||||| ||||| ||||| ||||||| ||||||||||||||| |||||||||||||||||| || |||||||| ||| ||||| |
|
|
| T |
12252500 |
ttttggttaatgataatgatgtcatcgttttattggttataaatttatatatttttgtataaatatttatgataaacaattttgaccccacttattgaaa |
12252599 |
T |
|
| Q |
285 |
tttctggatccgtccctgg |
303 |
Q |
| |
|
||||||||||||| ||||| |
|
|
| T |
12252600 |
tttctggatccgttcctgg |
12252618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 167 - 215
Target Start/End: Original strand, 2980874 - 2980922
Alignment:
| Q |
167 |
tttttgtaattttcactattttgcttaatggtaatgacttcatcatttt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
2980874 |
tttttgtaattttcactattttgcttaatggtaatgacgttatcatttt |
2980922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 258; Significance: 1e-143; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 1979784 - 1980082
Alignment:
| Q |
1 |
gtatgggagatgagtttttgaatggttgtttggtaacatacattgagagtgatatatttgatagtgttgaaaatgnnnnnnntcttgcaacgctttcaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
1979784 |
gtatgggagatgagtttttgaatggttgtttggtaacatactttgagagtgatatatttgatagtgttgaaaatgaaaaaa-tcttgcaacgctttcaaa |
1979882 |
T |
|
| Q |
101 |
atatgacgtcacgaagagggaaattgtaattcttcgtgtctttagttttttgatatagtcatatactttttgtaattttcactattttgcttaatggtaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
1979883 |
atatgacgtcacgaagagggaaattgtaattcttcgtgtctttagttttttgatatagtcatatactttttgtagttttcactattttgcttaatggtaa |
1979982 |
T |
|
| Q |
201 |
tgacttcatcattttaatggttatggttttatatatttttgtttaaatatttatgataaacgatcttgaccccgctttctgaaatttctggatccgtccc |
300 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
1979983 |
tgacttcatcattttaatggttatgattttatatatttttgtttaaatatttatgataaacgatcttgaccccactttctgaaatttctggatccgtccc |
1980082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 10733655 - 10733956
Alignment:
| Q |
1 |
gtatgggagatgagtttttgaatggttgtttggtaacatacattgagagtgatatatttgatagtgttgaaaatgnnnnnnntcttgcaacgctttcaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |
|
|
| T |
10733655 |
gtatgggagatgagtttttgaatggttgtttggtaacatacattgagagtgatatattttatagtgttgaaaatgaaaaaa-tcttgcaacgctttcaaa |
10733753 |
T |
|
| Q |
101 |
atatgacgtcacgaagagggaaattgtaattcttcgtgtctttagttttttgatatagtcatatactttttgtaattttcactattttgcttaatggtaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10733754 |
atatgacgtcacgaagagggaaattgtaattcttcgtgtctttagttttttgatatagtcatatactttttgtaattttcactattttgcttaatggtaa |
10733853 |
T |
|
| Q |
201 |
tgacttcatcattttaatggttatggttttatatatttttgtttaaatat-ttatgataaacgatcttgaccccgctttctgaaatttctggatccgtcc |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
10733854 |
tgacttcatcattttaatggttatggttttatatatttttgtttaaatatataatgataaacgatcttgaccccactttctaaaatttctggatccgtcc |
10733953 |
T |
|
| Q |
300 |
ctg |
302 |
Q |
| |
|
||| |
|
|
| T |
10733954 |
ctg |
10733956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 4789519 - 4789218
Alignment:
| Q |
1 |
gtatgggagatgagtttttgaatggttgtttggtaacatacattgagagtgatatatttgatagtgtt--gaaaatgnnnnnnntcttgcaacgctttca |
98 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
4789519 |
gtatgggagatgagtttt-gaatggttgtttggtaacatacattgagagtgatatatttgatagtgttttgaaaatgaaaaaa-tcttgcaacgctttca |
4789422 |
T |
|
| Q |
99 |
aaatatgacgtcacgaagagggaaattgtaattcttcgtgtctttagttttttgatatagtcatatactttttgtaattttcactattttgcttaatggt |
198 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
4789421 |
aaatatgacgtcacgaagaggaaaattgtaattcttcgtgtctttagttttttgatatagtcatatactttttgtaattttcactattttacttaatggt |
4789322 |
T |
|
| Q |
199 |
aatgacttcatcattttaatggttatggttttatatatttttgtttaaatatttatgataaacgatcttgaccccgctttctgaaatttctggatccgtc |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||| |
|
|
| T |
4789321 |
aatgacttcatcattttaatggttatggttttatatatttttgtttaaatatttatgataaacgatcttgaccccactttatgaaatttttggatccgtc |
4789222 |
T |
|
| Q |
299 |
cctg |
302 |
Q |
| |
|
|||| |
|
|
| T |
4789221 |
cctg |
4789218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 16107649 - 16107347
Alignment:
| Q |
1 |
gtatgggagatgagtttttgaatggttgtttggtaacatacattgagagtgatatatttgatagtgttgaaaatgnnnnnnn-tcttgcaacgctttcaa |
99 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
16107649 |
gtatgggagatgagtttttgaatgattgtttggtaacatagattgagagtgatatatttgatagtgttgaaaatgaaaaaaaatcttacaacgctttcaa |
16107550 |
T |
|
| Q |
100 |
aatatgacgtcacgaagagggaaattgtaattcttcgtgtctttagttttttgatatagtcatatactttttgtaattttcactattttgcttaatggta |
199 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| | | ||||||||||||| |
|
|
| T |
16107549 |
aatatgacgccacgaagagggcaattgtaattcttcgtgtatttagttttttgatatagtcatactttttttgtaattttcattgtcttgcttaatggta |
16107450 |
T |
|
| Q |
200 |
atgacttcatcattttaatggttatggttttatatatttttgtttaaatatttatgataaacgatcttgaccccgctttctgaaatttctggatccgtcc |
299 |
Q |
| |
|
||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||| |||||||||||| |
|
|
| T |
16107449 |
atgacgttatcattttaatggttatggttttatatatttttgtataaatatttatgacaaacgatcttgaccctactttctgaaattcctggatccgtcc |
16107350 |
T |
|
| Q |
300 |
ctg |
302 |
Q |
| |
|
||| |
|
|
| T |
16107349 |
ctg |
16107347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 141 - 302
Target Start/End: Complemental strand, 16550088 - 16549925
Alignment:
| Q |
141 |
tttagttttttgatatag--tcatatactttttgtaattttcactattttgcttaatggtaatgacttcatcattttaatggttatggttttatatattt |
238 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||||| |||| | |||||||||||| |||||| |||||||||||||||| | ||||||||||||||| |
|
|
| T |
16550088 |
tttagtttttttatatacaatcatatactttttgtaatcttcaatgttttgcttaatgataatgatttcatcattttaatggatgtggttttatatattt |
16549989 |
T |
|
| Q |
239 |
ttgtttaaatatttatgataaacgatcttgaccccgctttctgaaatttctggatccgtccctg |
302 |
Q |
| |
|
|||| |||||||||||||||| ||| ||||||| ||||||||||||| || ||||||||||| |
|
|
| T |
16549988 |
ttgtataaatatttatgataagcgagtttgacccgactttctgaaatttttgaatccgtccctg |
16549925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 159 - 238
Target Start/End: Original strand, 39097066 - 39097145
Alignment:
| Q |
159 |
tcatatactttttgtaattttcactattttgcttaatggtaatgacttcatcattttaatggttatggttttatatattt |
238 |
Q |
| |
|
|||||||||||||||||| |||| | ||||||| |||| | || ||||| ||||||||| || ||||||||||||||||| |
|
|
| T |
39097066 |
tcatatactttttgtaatcttcaatgttttgctaaatgattataacttcttcattttaacggctatggttttatatattt |
39097145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 298
Target Start/End: Original strand, 106483 - 106552
Alignment:
| Q |
228 |
tttatatatttttgtttaaatatttatgataaacgatcttgaccccgctttctgaaatttctggatccgtc |
298 |
Q |
| |
|
|||||||||||| || |||||||||| ||||||| || |||||| | ||| ||||||||||||||||||| |
|
|
| T |
106483 |
tttatatatttt-gtataaatatttaagataaacaatattgaccacacttattgaaatttctggatccgtc |
106552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 302
Target Start/End: Original strand, 42436431 - 42436548
Alignment:
| Q |
185 |
ttttgcttaatggtaatgacttcatcattttaatggttatggttttatatatttttgtttaaatatttatgataaacgatcttgaccccgctttctgaaa |
284 |
Q |
| |
|
||||| || ||| |||||| ||||||||||| | ||||| |||| |||||||| | |||||||||||||||| | |||||| | ||| ||||| |
|
|
| T |
42436431 |
ttttggttgatgataatgatgtcatcattttatttgttataaatttacatatttttctagaaatatttatgataaataactttgacctcacttattgaaa |
42436530 |
T |
|
| Q |
285 |
tttctggatccgtccctg |
302 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
42436531 |
tttctggatccgtccctg |
42436548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 14460434 - 14460134
Alignment:
| Q |
1 |
gtatgggagatgagtttttgaatggttgtttggtaacatacattgagagtgatatatttgatagtgttgaaaatgnnnnnnntcttgcaacgctttcaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
14460434 |
gtatgggagatgagtttttgaatggttgtttggtaacatacattgagagtgatatatttgatagtgttgaaaatgaaaaaa-tcttgcaacgctttcaaa |
14460336 |
T |
|
| Q |
101 |
atatgacgtcacgaagagggaaattgtaattcttcgtgtctttagttttttgatatagtcatatactttttgtaattttcactattttgcttaatggtaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14460335 |
atatgacgtcacgaagagggaaattgtaattcgtcgtgtctttagttttttgatatagtcatatactttttgtaattttcactattttgcttaatggtaa |
14460236 |
T |
|
| Q |
201 |
tgacttcatcattttaatggttatggttttatatatttttgtttaaatatttatgataaacgatcttgaccccgctttctgaaatttctggatccgtccc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||||| ||||||||||||| |
|
|
| T |
14460235 |
tgacttcatcattttaatggttatggttttatatatttttgtttaaatatttatgataaacgagcgtgaccccactttctgaaattcctggatccgtccc |
14460136 |
T |
|
| Q |
301 |
tg |
302 |
Q |
| |
|
|| |
|
|
| T |
14460135 |
tg |
14460134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 19151741 - 19151673
Alignment:
| Q |
1 |
gtatgggagatgagtttttgaatggttgtttggtaacatacattgagagtgatatatttgatagtgttga |
70 |
Q |
| |
|
|||| |||||||| ||||||||||||||| | |||||| | || |||| ||||||||||||||||||||| |
|
|
| T |
19151741 |
gtattggagatgaatttttgaatggttgtctagtaacaaatat-gagaatgatatatttgatagtgttga |
19151673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 74
Target Start/End: Original strand, 7333677 - 7333745
Alignment:
| Q |
6 |
ggagatgagtttttgaatggttgtttggtaacatacattgagagtgatatatttgatagtgttgaaaat |
74 |
Q |
| |
|
|||||||| ||||||||||||||| || ||||||| || || ||||| ||| |||||||||||||||| |
|
|
| T |
7333677 |
ggagatgaatttttgaatggttgtctgataacatatatagaaagtgacgtatctgatagtgttgaaaat |
7333745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 228 - 303
Target Start/End: Complemental strand, 23035212 - 23035138
Alignment:
| Q |
228 |
tttatatatttttgtttaaatatttatgataaacgatcttgaccccgctttctgaaatttctggatccgtccctgg |
303 |
Q |
| |
|
||||||||||||| |||| |||| |||||||||||| |||||||| | | | |||||||||||||||||||||| |
|
|
| T |
23035212 |
tttatatatttttatttacatata-atgataaacgatattgaccccacatattaaaatttctggatccgtccctgg |
23035138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 40802902 - 40802844
Alignment:
| Q |
16 |
ttttgaatggttgtttggtaacatacattgagagtgatatatttgatagtgttgaaaat |
74 |
Q |
| |
|
|||||||| |||| || |||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
40802902 |
ttttgaatcattgtctgataacatacatataaagtgatatatttgatagtgttgaaaat |
40802844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 26588411 - 26588111
Alignment:
| Q |
1 |
gtatgggagatgagtttttgaatggttgtttggtaacatacattgagagtgatatatttgatagtgttgaaaatgnnnnnnntcttgcaacgctttcaaa |
100 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
26588411 |
gtatgggagatcagtttttgaatggttgcttggtaacatacattgagagtgatatatttgatagtgttgaaaatgaaaaaa-tcttgcaacgctttcaaa |
26588313 |
T |
|
| Q |
101 |
atatgacgtcacgaagagggaaattgtaattcttcgtgtctttagttttttgatatagtcatatactttttgtaattttcactattttgcttaatggtaa |
200 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
26588312 |
atatgacgtcatgaagagggaaattgtaattcttcgcgtctttagttttttgatatagtcatatcctttttgtaattttcactattttgcttaatggtaa |
26588213 |
T |
|
| Q |
201 |
tgacttcatcattttaatggttatggttttatatatttttgtttaaatatttatgataaacgatcttgaccccgctttctgaaatttctggatccgtccc |
300 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26588212 |
tgacttcatcattttaatggttatgattttatatatttttgtttaaatatttatgataaacgatcttgaccccgctttctgaaatttctggatccgtccc |
26588113 |
T |
|
| Q |
301 |
tg |
302 |
Q |
| |
|
|| |
|
|
| T |
26588112 |
tg |
26588111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 167 - 303
Target Start/End: Original strand, 1165413 - 1165550
Alignment:
| Q |
167 |
tttttgtaattttcactattttgcttaatggtaatgacttcatcatttt--aatggttatggttttatatatttttgtttaaatatttatgataaacgat |
264 |
Q |
| |
|
|||||| ||| |||| | |||||||||||| |||||||||||||||||| |||||||||||||||||||| |||||| ||||| ||||| ||| || |
|
|
| T |
1165413 |
tttttgcaatcttcaatgttttgcttaatgataatgacttcatcattttttaatggttatggttttatataattttgtataaat-tttataatacctgag |
1165511 |
T |
|
| Q |
265 |
cttgaccccgctttctgaaatttctggatccgtccctgg |
303 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
1165512 |
cttgaccccactttctgaaatttctggatctgtccctgg |
1165550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 112
Target Start/End: Original strand, 11405665 - 11405762
Alignment:
| Q |
15 |
tttttgaatggttgtttggtaacatacattgagagtgatatatttgatagtgttgaaaatgnnnnnnntcttgcaacgctttcaaaatatgacgtcac |
112 |
Q |
| |
|
||||| |||| |||| ||||| |||||| |||||||||||||||||||||| | |||||| ||||||||| | |||||||||||| ||||| |
|
|
| T |
11405665 |
ttttttaatgattgtcgggtaatatacatggagagtgatatatttgatagtggtaaaaatgaaaaatatcttgcaacacattcaaaatatgaagtcac |
11405762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 243; Significance: 1e-134; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 8354432 - 8354137
Alignment:
| Q |
1 |
gtatgggagatgagtttttgaatggttgtttggtaacatacattgagagtgatatatttgatagtgttgaaaatgnnnnnnntcttgcaacgctttcaaa |
100 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
8354432 |
gtatgggagatcagtttttgaatggttgcttggtaacatacattgagagtgatatatttgatagtgttgaaaatgaaaaaa-tcttgcaacgctttcaaa |
8354334 |
T |
|
| Q |
101 |
atatgacgtcacgaagagggaaattgtaattcttcgtgtctttagttttttgatatagtcatatactttttgtaattttcactattttgcttaatggtaa |
200 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8354333 |
atatgacgtcacgaagacggaaattgtaattcttcgcgtctttagttttttgatatagtcatatactttttgtaattttcactattttgcttaatggtaa |
8354234 |
T |
|
| Q |
201 |
tgacttcatcattttaatggttatggttttatatatttttgtttaaatatttatgataaacgatcttgaccccgctttctgaaatttctggatccgt |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||| |
|
|
| T |
8354233 |
tgacttcatcattttaatggttatggttttatatatttttgtttaaatatttatgataaacgatcttgacctcgctttttgaaatttttggatccgt |
8354137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 5700825 - 5701127
Alignment:
| Q |
1 |
gtatgggagatgagtttttgaatggttgtttggtaacatacattgagagtgatatatttgatagtgttgaaaatgnnnnnnntcttgcaacgctttcaaa |
100 |
Q |
| |
|
||||||||||| |||||| ||||| ||||||||||||||| |||||||||| ||||||||||||||||||||||| |||| ||||| ||| ||| |
|
|
| T |
5700825 |
gtatgggagattagtttt-gaatgattgtttggtaacatagattgagagtggtatatttgatagtgttgaaaatgaaaaaa-tcttacaacgtttttaaa |
5700922 |
T |
|
| Q |
101 |
atatgacgtcacgaagagggaaattgtaattcttcgtgtctttagttttttgatatagtcatatactttt--tgtaattttcactattttgcttaatggt |
198 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
5700923 |
atatgacgtcacgaagtgggcaattgtaattcttcgtgtatttagttttttgatatagtcatatactttttttgtaattttcaccgttttgcttaatggt |
5701022 |
T |
|
| Q |
199 |
aatgacttcatcattttaatggttatggttttatatatttttgtttaaatatttatgataaacgatcttgaccccgctttctgaaatttctggatccgtc |
298 |
Q |
| |
|
|||||| | |||||||||||||||||||||||| |||| ||||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||| || |
|
|
| T |
5701023 |
aatgacattatcattttaatggttatggttttagatatctttgtataaatatttatgacaaacgatcttgaccctactttctgaaatttctggatccatc |
5701122 |
T |
|
| Q |
299 |
cctgg |
303 |
Q |
| |
|
||||| |
|
|
| T |
5701123 |
cctgg |
5701127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 159 - 287
Target Start/End: Complemental strand, 22349379 - 22349251
Alignment:
| Q |
159 |
tcatatactttttgtaattttcactattttgcttaatggtaatgacttcatcattttaatggttatggttttatatatttttgtttaaatatttatgata |
258 |
Q |
| |
|
|||||||||||||||||| |||| | ||||||||||| |||||||||| |||| ||||||| ||| |||||||||||||||| ||||||||||| | | |
|
|
| T |
22349379 |
tcatatactttttgtaatcttcaatgttttgcttaatcataatgacttcgacattataatggtcatgattttatatatttttgtataaatatttataaaa |
22349280 |
T |
|
| Q |
259 |
aacgatcttgaccccgctttctgaaattt |
287 |
Q |
| |
|
||||| ||||||| | |||||| |||||| |
|
|
| T |
22349279 |
aacgagcttgacctctctttctcaaattt |
22349251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 258
Target Start/End: Complemental strand, 290765 - 290713
Alignment:
| Q |
206 |
tcatcattttaatggttatggttttatatatttttgtttaaatatttatgata |
258 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||||| |||||||| |||||| |
|
|
| T |
290765 |
tcatcattttattggttataaatttatatatttttgtataaatattcatgata |
290713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 220; Significance: 1e-121; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 5 - 304
Target Start/End: Complemental strand, 7732942 - 7732647
Alignment:
| Q |
5 |
gggagatgagtttttgaatggttgtttggtaacatacattgagagtgatatatttgatagtgttgaaaatgnnnnnnntcttgcaacgctttcaaaatat |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
7732942 |
gggagatgagtttttgaatggttgtttggtaacata---tgagagtgatatatttgatagtgttgaaaatgaaaaaa-tcttgcaatgctttcaaaatat |
7732847 |
T |
|
| Q |
105 |
gacgtcacgaagagggaaattgtaattcttcgtgtctttagttttttgatatagtcatatactttttgtaattttcactattttgcttaatggtaatgac |
204 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
7732846 |
gacgtcaagatgagggaaattgtaattcttcgtgtctttagttttttgatatagtcatataccttttgtaattttcactattttgcttaatggtaatgat |
7732747 |
T |
|
| Q |
205 |
ttcatcattttaatggttatggttttatatatttttgtttaaatatttatgataaacgatcttgaccccgctttctgaaatttctggatccgtccctgga |
304 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||| |
|
|
| T |
7732746 |
ttcatcattttaatggttatgattttatatatttttgtttaaatatttatgataaacgatcttgaccccactttctgtaattcttggatccgtccctgga |
7732647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 57 - 285
Target Start/End: Complemental strand, 32934307 - 32934080
Alignment:
| Q |
57 |
tttgatagtgttgaaaatgnnnnnnntcttgcaacgctttcaaaatatgacgtcacgaagagggaaattgtaattcttcgtgtctttagttttttgatat |
156 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32934307 |
tttgatagtgttgaaaatgaaaaaaatcttgcaacgctttcaaaatatgacgtcacgaagagggaaattgtaattcttcgtgtctttagttttttgatat |
32934208 |
T |
|
| Q |
157 |
agtcatatactttttgtaattttcactattttgcttaatggtaatgacttcatcattttaatggttatggttttatatatttttgtttaaatatttatga |
256 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
32934207 |
agtcatatactttttgtaattttcactattttgcttaatggtaatgacttcatcattttaatggctatgg-tttatatatttttgtttaaatatttatga |
32934109 |
T |
|
| Q |
257 |
taaacgatcttgaccccgctttctgaaat |
285 |
Q |
| |
|
||||||||||||||||| |||||||||| |
|
|
| T |
32934108 |
taaacgatcttgaccccattttctgaaat |
32934080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 24585985 - 24585710
Alignment:
| Q |
1 |
gtatgggagatgagtttttgaatggttgtttggtaacatacattgagagtgatatatttgatagtgttgaaaatgnnnnnnntcttgcaacgctttcaaa |
100 |
Q |
| |
|
||||| |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |||| ||||||||| ||| |
|
|
| T |
24585985 |
gtatgagagatgagtttttgaatgattgtttggtaacatagattgagagtgatatatttgatagtgttgaaaatgaaaaaaatcttacaacgctttaaaa |
24585886 |
T |
|
| Q |
101 |
atatgacgtcacgaagagggaaattgtaattcttcgtgtctttagttttttgatatagtcatatact---------ttttgtaattttcactattttgct |
191 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||| ||||||| |
|
|
| T |
24585885 |
atatgacgtcacgaagagggcaattgtaattcttcgtgtatttagttttttgatatagtaatatacttttttttttttttgtaattttcactgttttgct |
24585786 |
T |
|
| Q |
192 |
taatggtaatgacttcatcattttaatggttatggttttatatatttttgtttaaatatttatgataaacgatctt |
267 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
24585785 |
taatggtaatgacgttatcattttaatggttatggttttatatatttttgtataaatatttatgacaaacgatctt |
24585710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 170 - 299
Target Start/End: Complemental strand, 5090580 - 5090451
Alignment:
| Q |
170 |
ttgtaattttcactattttgcttaatggtaatgacttcatcattttaatggttatggttttatatatttttgtttaaatatttatgataaacgatcttga |
269 |
Q |
| |
|
||||||| |||| | ||||||||| || ||||||||||||||||||| | |||||| || ||| |||||||| |||||||||||| ||| || ||| |
|
|
| T |
5090580 |
ttgtaatcttcaatgttttgcttagtgataatgacttcatcattttatttgttatgaattcatagatttttgtaaaaatatttatgacaaatgactgtga |
5090481 |
T |
|
| Q |
270 |
ccccgctttctgaaatttctggatccgtcc |
299 |
Q |
| |
|
|||| ||| ||||||||||| |||||||| |
|
|
| T |
5090480 |
ccccacttattgaaatttctgcatccgtcc |
5090451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 305 - 345
Target Start/End: Complemental strand, 32936037 - 32935997
Alignment:
| Q |
305 |
gttgtgggttgtttcggtagtgtggtgacgatgtgatgatg |
345 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32936037 |
gttgtgggttgtttcggtagtgtggtgacgatgtgatgatg |
32935997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 232 - 303
Target Start/End: Complemental strand, 2149778 - 2149707
Alignment:
| Q |
232 |
tatatttttgtttaaatatttatgataaacgatcttgaccccgctttctgaaatttctggatccgtccctgg |
303 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||||||||||| | ||||| |||| |||||||| |||| |
|
|
| T |
2149778 |
tatatttttttataaatatttatgataaacgatcttgaccccgcgtattgaaacttctagatccgtctctgg |
2149707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 75
Target Start/End: Complemental strand, 5090771 - 5090698
Alignment:
| Q |
2 |
tatgggagatgagtttttgaatggttgtttggtaacatacattgagagtgatatatttgatagtgttgaaaatg |
75 |
Q |
| |
|
||||| |||||||||||||||| |||||||| ||||| ||| |||| ||||||||| ||||||||||||||| |
|
|
| T |
5090771 |
tatggaagatgagtttttgaatcattgtttggcaacatgcatatagagcgatatattttatagtgttgaaaatg |
5090698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 159 - 252
Target Start/End: Complemental strand, 38159743 - 38159650
Alignment:
| Q |
159 |
tcatatactttttgtaattttcactattttgcttaatggtaatgacttcatcattttaatggttatggttttatatatttttgtttaaatattt |
252 |
Q |
| |
|
|||||| ||||||||||| |||| | ||||| |||||| |||||||||||||||||||||| |||| ||||||||||||||||| ||||||||| |
|
|
| T |
38159743 |
tcatatgctttttgtaatcttcaatgttttgtttaatgataatgacttcatcattttaatgtttatcgttttatatatttttgtataaatattt |
38159650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 184 - 273
Target Start/End: Complemental strand, 4442200 - 4442111
Alignment:
| Q |
184 |
attttgcttaatggtaatgacttcatcattttaatggttatggttttatatatttttgtttaaatatttatgataaacgatcttgacccc |
273 |
Q |
| |
|
||||| ||||||| |||||| ||| ||||| ||||||| | ||||||| ||||||||||||||||||||||||| || |||||||| |
|
|
| T |
4442200 |
atttttcttaatgataatgatgccattatttttttggttatagatttatatttttttgtttaaatatttatgataaaaaatattgacccc |
4442111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 246 - 295
Target Start/End: Complemental strand, 38159354 - 38159305
Alignment:
| Q |
246 |
aatatttatgataaacgatcttgaccccgctttctgaaatttctggatcc |
295 |
Q |
| |
|
|||||||||||||||||| ||||||| | ||||||||||||| ||||||| |
|
|
| T |
38159354 |
aatatttatgataaacgagcttgacctcactttctgaaatttttggatcc |
38159305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 212 - 290
Target Start/End: Complemental strand, 10285536 - 10285460
Alignment:
| Q |
212 |
ttttaatggttatggttttatatatttttgtttaaatatttatgataaacgatcttgaccccgctttctgaaatttctg |
290 |
Q |
| |
|
||||| |||||||| |||| |||||||| | ||||||||||||||||||||||||| ||| ||| ||||||||||| |
|
|
| T |
10285536 |
ttttattggttatgaatttaaatatttttat--aaatatttatgataaacgatcttgatcccacttattgaaatttctg |
10285460 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 290
Target Start/End: Complemental strand, 10266481 - 10266435
Alignment:
| Q |
244 |
taaatatttatgataaacgatcttgaccccgctttctgaaatttctg |
290 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||| ||||||||||| |
|
|
| T |
10266481 |
taaatatttatgataaacgatcttgatcccacttattgaaatttctg |
10266435 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 185 - 301
Target Start/End: Original strand, 6015768 - 6015884
Alignment:
| Q |
185 |
ttttgcttaatggtaatgacttcatcattttaatggttatggttttatatatttttgtttaaatatttatgataaacgatcttgaccccgctttctgaaa |
284 |
Q |
| |
|
||||| |||||| |||||| ||||| ||||| ||||||| ||||||||||||||| |||||||||||||||||| || |||||||| ||| ||||| |
|
|
| T |
6015768 |
ttttggttaatgataatgatgtcatcgttttattggttataaatttatatatttttgtataaatatttatgataaacaattttgaccccacttattgaaa |
6015867 |
T |
|
| Q |
285 |
tttctggatccgtccct |
301 |
Q |
| |
|
||||||||||| ||||| |
|
|
| T |
6015868 |
tttctggatccatccct |
6015884 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 237 - 298
Target Start/End: Original strand, 13316540 - 13316601
Alignment:
| Q |
237 |
ttttgtttaaatatttatgataaacgatcttgaccccgctttctgaaatttctggatccgtc |
298 |
Q |
| |
|
|||||| |||||||||| ||||||| || |||||||| ||| ||||||||||||||||||| |
|
|
| T |
13316540 |
ttttgtataaatatttaagataaacaatattgaccccacttattgaaatttctggatccgtc |
13316601 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 75
Target Start/End: Original strand, 12818375 - 12818443
Alignment:
| Q |
7 |
gagatgagtttttgaatggttgtttggtaacatacattgagagtgatatatttgatagtgttgaaaatg |
75 |
Q |
| |
|
||||||| ||||||||||||||| | |||||||| || || ||||| ||||||||| ||||||| |||| |
|
|
| T |
12818375 |
gagatgaatttttgaatggttgtctagtaacatatatagaaagtgaaatatttgatggtgttgagaatg |
12818443 |
T |
|
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