View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15783_high_1 (Length: 480)

Name: NF15783_high_1
Description: NF15783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15783_high_1
NF15783_high_1
[»] chr6 (18 HSPs)
chr6 (9-387)||(33359382-33359760)
chr6 (26-381)||(33263317-33263679)
chr6 (17-387)||(33286219-33286599)
chr6 (17-217)||(31562021-31562222)
chr6 (17-255)||(9167440-9167679)
chr6 (95-387)||(33401373-33401671)
chr6 (36-217)||(33058254-33058438)
chr6 (52-206)||(33305193-33305347)
chr6 (66-387)||(33388768-33389098)
chr6 (23-326)||(33272481-33272789)
chr6 (86-202)||(33643832-33643952)
chr6 (99-326)||(33643702-33643935)
chr6 (104-193)||(33410701-33410790)
chr6 (283-387)||(33058513-33058623)
chr6 (281-326)||(9167705-9167750)
chr6 (283-326)||(33410916-33410959)
chr6 (282-319)||(31561898-31561935)
chr6 (349-386)||(33643636-33643673)
[»] chr2 (1 HSPs)
chr2 (26-387)||(17439856-17440228)
[»] scaffold1408 (1 HSPs)
scaffold1408 (99-217)||(1385-1503)
[»] scaffold0428 (1 HSPs)
scaffold0428 (99-217)||(7131-7249)
[»] chr4 (5 HSPs)
chr4 (101-217)||(31157992-31158108)
chr4 (338-387)||(31477988-31478037)
chr4 (95-217)||(31149112-31149234)
chr4 (96-217)||(31503338-31503459)
chr4 (101-149)||(31491066-31491114)


Alignment Details
Target: chr6 (Bit Score: 355; Significance: 0; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 9 - 387
Target Start/End: Original strand, 33359382 - 33359760
Alignment:
Q  9 gtgagatgaaaaccaacaaaaatagagcattgctttgattaaaagataattgttttcaattggtttatatttctaaaataaacattaataataagagaat 108  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  33359382 gtgacatgaaaaccaacaaaactagagcattgctttgattaaaagataattattttcaattggtttatatttctaaaataaacattaataataagagaat 33359481  T
Q  109 ttatattaccttcttgtttttccgtagttgtttaatgctgcatttcttcaagatcaattctacaagttcattggggttaaaacttgttggcaaatactgg 208  Q
    ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  33359482 ttatattaccttcttgtttttccatagttgtttaatgctgcttttcttcaagatcaattctacaagttcattggagttaaaacttgttggcaaatactgg 33359581  T
Q  209 caaggatatgcctcccactgaataaatcttaatgcgtttgaaagactcgttgggcttcttgagatatatgcattgatgatgagcactctaagattactca 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33359582 caaggatatgcctcccactgaataaatcttaatgcgtttgaaagactcgttgggcttcttgagatatatgcattgatgatgagcactctaagattactca 33359681  T
Q  309 tttttgacaagtgttcaaagtccaccatcttttcatgaatcaaaactatggcttcaacatgtttttcctaaagtattgc 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33359682 tttttgacaagtgttcaaagtccaccatcttttcatgaatcaaaactatggcttcaacatgtttttcctaaagtattgc 33359760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 26 - 381
Target Start/End: Original strand, 33263317 - 33263679
Alignment:
Q  26 aaaaatagagc-attgctttgattaaaagataattgttttcaattggtttatatttctaaaataa---acattaataataagagaatttatattaccttc 121  Q
    ||||||||||| ||| ||||||||| |||| ||||||||  |||| | |||||||||||| || |   | |||||||||||||||||||||| |||||||    
T  33263317 aaaaatagagccattactttgattataagagaattgtttcgaatttggttatatttctaagatgatgaatattaataataagagaatttatagtaccttc 33263416  T
Q  122 ttgtttttccgtagttgtttaatgctgcatttcttcaagatcaattctacaagttcattggggttaaaacttgttggcaaatactggcaaggatatgcct 221  Q
    |||||||||| ||||||| ||||| ||| ||||  ||||||||||||||||||||||||||||| |||||||| |||||||||||   |||||||| | |    
T  33263417 ttgtttttccatagttgtgtaatgttgcttttcaccaagatcaattctacaagttcattggggtgaaaacttgatggcaaatactttgaaggatattcat 33263516  T
Q  222 cccactgaataaatcttaatgcgtttgaaagactcgttgggcttcttgagatata---tgcat---tgatgatgagcactctaagattactcatttttga 315  Q
    |||||| || | |||| |||  |||||||||||   ||||||||| |||||||||   | | |   |||||||||||| |||||||||||||||||||||    
T  33263517 cccactcaacatatctcaatttgtttgaaagacaacttgggcttcctgagatatacattccgtacctgatgatgagcaatctaagattactcatttttga 33263616  T
Q  316 caagtgttcaaagtccaccatcttttcatgaatcaaaactatggcttcaacatgtttttcctaaag 381  Q
    ||| ||||||| ||||||   || ||||| |  |||||||||||||| ||| || |||||||||||    
T  33263617 caattgttcaacgtccac---ctcttcatcatccaaaactatggctttaacttgcttttcctaaag 33263679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 17 - 387
Target Start/End: Original strand, 33286219 - 33286599
Alignment:
Q  17 aaaaccaacaaaaatagagc-attgctttgattaaaagataattgttttcaattggtttatatttctaaaataaacattaataataagagaatttatatt 115  Q
    ||||| ||||||||| |||| |||  |||||||  |||| ||||||||  |||| |||||||||||||| || |||||| ||||||||| |||||||| |    
T  33286219 aaaacaaacaaaaatggagccattaatttgattttaagagaattgtttcaaatttgtttatatttctaagatgaacatttataataagataatttatagt 33286318  T
Q  116 accttcttgtttttccgtagttgtttaatgctgcatttcttcaagatcaattctacaagttcattggggttaaaacttgttggcaaatactggcaaggat 215  Q
    |||||||| ||| ||| ||||||||||||| |||   | | ||||||||||||||||||||||||||||| |||| ||| ||||||||| | | ||||||    
T  33286319 accttcttctttctccatagttgtttaatgttgctactatgcaagatcaattctacaagttcattggggtgaaaatttgatggcaaatatttgaaaggat 33286418  T
Q  216 atgcctcccactgaataaatcttaatgcgtttgaaagactcgttgggcttcttgagatatatgca------ttgatgatgagcactctaagattactcat 309  Q
    || |   |||||||| | ||||||||  |||||||||||||  | ||||||  |||||||   ||       |||||||||||| |||||||||||||||    
T  33286419 atccagtccactgaacatatcttaatttgtttgaaagactcaataggcttccggagatattcacaccccacatgatgatgagcaatctaagattactcat 33286518  T
Q  310 ttttgacaagtgttcaaagtcca---ccatcttttcatgaatcaaaactatggcttcaacatgtttttcctaaagtattgc 387  Q
    |||||||||||||||||  | ||   | | || ||||| | ||||||||| ||||| |||||| ||||||||||| |||||    
T  33286519 ttttgacaagtgttcaacattcaatccaacctcttcatcattcaaaactaaggctttaacatgcttttcctaaagcattgc 33286599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 17 - 217
Target Start/End: Complemental strand, 31562222 - 31562021
Alignment:
Q  17 aaaaccaacaaaaatagagc-attgctttgattaaaagataattgttttcaattggtttatatttctaaaataaacattaataataagagaatttatatt 115  Q
    ||||| |||||||||||||| ||| |||||||||||||||||||||||  |||| ||||||| |||||| ||||  | ||||||||||| |||||| | |    
T  31562222 aaaacaaacaaaaatagagccattactttgattaaaagataattgtttctaatttgtttatagttctaagataattagtaataataagataatttacagt 31562123  T
Q  116 accttcttgtttttccgtagttgtttaatgctgcatttcttcaagatcaattctacaagttcattggggttaaaacttgttggcaaatactggcaaggat 215  Q
    |||||||||||| ||| ||||||  ||||||||| | ||  ||||||||||||||||||||||| ||||| |||||||| ||||||||||| | ||||||    
T  31562122 accttcttgtttgtccatagttgcgtaatgctgcttctcgccaagatcaattctacaagttcataggggtgaaaacttgatggcaaatacttgaaaggat 31562023  T
Q  216 at 217  Q
    ||    
T  31562022 at 31562021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 17 - 255
Target Start/End: Original strand, 9167440 - 9167679
Alignment:
Q  17 aaaaccaacaaaaatagagc-attgctttgattaaaagataattgttttcaattggtttatatttctaaaataaacattaataataagagaatttatatt 115  Q
    |||||||||||||||||||| ||| ||||||||  |||| ||||||||  |||| |||||||||||||||||||||  ||||||||||||| |||||| |    
T  9167440 aaaaccaacaaaaatagagccattactttgattgtaagaaaattgtttcgaatttgtttatatttctaaaataaacggtaataataagagagtttatagt 9167539  T
Q  116 accttcttgtttttccgtagttgtttaatgctgcatttcttcaagatcaattctacaagttcattggggttaaaacttgttggcaaatactggcaaggat 215  Q
    ||||| |||||||||| ||||||||||||| |||     |||||||||| || |||||||||||||| || |||||| | ||||||||||| | ||||||    
T  9167540 acctttttgtttttccatagttgtttaatgttgctccagttcaagatcagttgtacaagttcattggcgtgaaaactcgatggcaaatacttgaaaggat 9167639  T
Q  216 atgcctcccactgaataaatcttaatgcgtttgaaagact 255  Q
    ||   | ||||| || | |||||||| |||| ||||||||    
T  9167640 atcgataccactcaagatatcttaattcgttcgaaagact 9167679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 95 - 387
Target Start/End: Original strand, 33401373 - 33401671
Alignment:
Q  95 aataataagagaatttatattaccttcttgtttttccgtagttgtttaatgctgcatttcttcaagatcaattctacaagttcattggggttaaaacttg 194  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||    |  ||||||||||||||||||||||||||||| ||||||||    
T  33401373 aataataagagaatttatagtaccttcttgtttttccatagttgtttaatgttgctacaccacaagatcaattctacaagttcattggggtgaaaacttg 33401472  T
Q  195 ttggcaaatactggcaaggatatgcctcccactgaataaatcttaatgcgtttgaaagactcgttgggcttcttgagatat-----atgca-ttgatgat 288  Q
    |||||||||||| | |||||||| | | ||| | || | |||||||| |||||||||||    ||| || || ||||||||      |||| ||||||||    
T  33401473 ttggcaaatacttgaaaggatattcatgccaatcaacatatcttaattcgtttgaaagaaaatttgagcctcctgagatattccaattgcacttgatgat 33401572  T
Q  289 gagcactctaagattactcatttttgacaagtgttcaaagtccaccatctt-ttcatgaatcaaaactatggcttcaacatgtttttcctaaagtattgc 387  Q
    ||| | ||||||||||||||||||||| ||||||||||  |||||| ||||  | | |  |||||| ||||||||||||||  ||||||||||| |||||    
T  33401573 gagaagtctaagattactcatttttgataagtgttcaacatccacc-tcttcattacgtttcaaaagtatggcttcaacattcttttcctaaagcattgc 33401671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 36 - 217
Target Start/End: Original strand, 33058254 - 33058438
Alignment:
Q  36 cattgctttgattaaaagataattgttttcaattggtttatatttctaaaat---aaacattaataataagagaatttatattaccttcttgtttttccg 132  Q
    |||| ||||||||  |||| ||||||||| |||| |||||||||||||| ||   ||| ||||||||||| |||||||||| |||||||||||||||||     
T  33058254 cattactttgattgtaagagaattgttttgaatttgtttatatttctaagatgataaatattaataataatagaatttatagtaccttcttgtttttcca 33058353  T
Q  133 tagttgtttaatgctgcatttcttcaagatcaattctacaagttcattggggttaaaacttgttggcaaatactggcaaggatat 217  Q
    ||||||||||||| |||  | | |||||||||||||||||||||||||||||| |||| ||| ||||||||||| | ||||||||    
T  33058354 tagttgtttaatgttgctctccgtcaagatcaattctacaagttcattggggtgaaaatttgatggcaaatacttggaaggatat 33058438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 52 - 206
Target Start/End: Original strand, 33305193 - 33305347
Alignment:
Q  52 agataattgttttcaattggtttatatttctaaaataaacattaataataagagaatttatattaccttcttgtttttccgtagttgtttaatgctgcat 151  Q
    ||||||||||||  | || |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||| |||||||| |||  |||      
T  33305193 agataattgtttcaattttgtttatatttctaagataaacattaataataagagaatttatagtaccttcttgtttgtccatagttgttcaattttgctg 33305292  T
Q  152 ttcttcaagatcaattctacaagttcattggggttaaaacttgttggcaaatact 206  Q
     |||| |||||||||||||||||||||||||||| |||| ||| |||||||||||    
T  33305293 ctctttaagatcaattctacaagttcattggggtgaaaatttgatggcaaatact 33305347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 66 - 387
Target Start/End: Original strand, 33388768 - 33389098
Alignment:
Q  66 aattggtttatatttctaaaataaacattaataataagagaatttatattaccttcttgtttttccgtagttgtttaatgctgcatttcttcaagatcaa 165  Q
    |||| |||||||||||||| ||||||||||||||| |   ||| |||| |||||||||||| |||| ||||||||| |||  ||  | | ||||||||||    
T  33388768 aatttgtttatatttctaagataaacattaataatca---aatgtataataccttcttgttcttccatagttgtttgatgtcgctatacatcaagatcaa 33388864  T
Q  166 ttctacaagttcattggggttaaaacttgttggcaaatactggcaaggatatgcctcccactgaataaatcttaatgcgtttgaaagactcgttgggctt 265  Q
     |||||||| ||| |||||| |||||||| ||||||||||| | |||||||    | ||||| || | ||||||||| |||||||||||||| ||||||     
T  33388865 ctctacaagatcactggggtgaaaacttgatggcaaatacttgaaaggataataattccactcaacatatcttaatgtgtttgaaagactcgatgggcta 33388964  T
Q  266 cttgagatatatgca------ttgatgatgagcactctaagattactcatttttgacaagtgttcaaagtccaccatctt-------ttcatgaatcaaa 352  Q
    |||| |||||  | |      ||||||||||| | |||||||||||||||||||||||| ||||||| ||||||| ||||        |||| | |||||    
T  33388965 cttgggatattcggaccccacttgatgatgagtaatctaagattactcatttttgacaactgttcaacgtccacc-tcttcaacatcatcatcattcaaa 33389063  T
Q  353 actatggcttcaacatgtttttcctaaagtattgc 387  Q
    |||||||||||||||||  |||||||||| |||||    
T  33389064 actatggcttcaacatgcctttcctaaagcattgc 33389098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 23 - 326
Target Start/End: Original strand, 33272481 - 33272789
Alignment:
Q  23 aacaaaaatagagc-attgctttgattaaaagataattgttttcaattggtttatatttctaaaataaacattaataataagagaatttatat-tacctt 120  Q
    |||||||||||| | ||| | ||||||  |||| ||||||||  |||| |||||||||||||| ||||||||||||||||   |||||||||  ||||||    
T  33272481 aacaaaaatagaaccattacattgattctaagagaattgtttcaaatttgtttatatttctaagataaacattaataata---gaatttataggtacctt 33272577  T
Q  121 cttgtttttccgtagttgtttaatgctgcatttcttcaagatcaattctacaagttcattggggttaaaacttgttggcaaatactggcaaggatatgcc 220  Q
    ||||||||||| ||||||||| |||  ||  ||| ||||||||||||||| ||| |||||||||| |||||||||||| | | ||| | |||||||| |     
T  33272578 cttgtttttccatagttgtttgatgtcgctattcatcaagatcaattctataaggtcattggggtgaaaacttgttggtagacacttgaaaggatatcca 33272677  T
Q  221 tcccactgaataaatcttaatgcgtttgaaagactcgttgggcttcttgagatat-----atgca-ttgatgatgagcactctaagattactcatttttg 314  Q
    ||||||| || | |||||||||| |||||||| |||| | | || | || |||||       ||| ||||| ||||||| ||||||||||||||||||||    
T  33272678 tcccactcaacatatcttaatgcatttgaaaggctcgatagactacctgggatattccgaccgcacttgattatgagcaatctaagattactcatttttg 33272777  T
Q  315 acaagtgttcaa 326  Q
     |||||||||||    
T  33272778 ccaagtgttcaa 33272789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 86 - 202
Target Start/End: Complemental strand, 33643952 - 33643832
Alignment:
Q  86 ataaacattaata----ataagagaatttatattaccttcttgtttttccgtagttgtttaatgctgcatttcttcaagatcaattctacaagttcattg 181  Q
    |||||||||||||    ||||||||||||||||||||||||||||||||| ||||||| ||||| |||  |||||||||| |||||||||||||| ||||    
T  33643952 ataaacattaataatatataagagaatttatattaccttcttgtttttccatagttgtctaatgttgctcttcttcaagaacaattctacaagttgattg 33643853  T
Q  182 gggttaaaacttgttggcaaa 202  Q
    || | |||| ||| |||||||    
T  33643852 ggctgaaaatttgatggcaaa 33643832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 99 - 326
Target Start/End: Complemental strand, 33643935 - 33643702
Alignment:
Q  99 ataagagaatttatattaccttcttgtttttccgtagttgtttaatgctgcatttcttcaagatcaattctacaagttcattggggttaaaacttgttgg 198  Q
    ||||||||||||||||||||||||||||||||| ||||||| ||||| |||  |||||||||| |||||||||||||| |||||| | |||| ||| |||    
T  33643935 ataagagaatttatattaccttcttgtttttccatagttgtctaatgttgctcttcttcaagaacaattctacaagttgattgggctgaaaatttgatgg 33643836  T
Q  199 caaatactggcaaggatatgcctcccactgaataaatcttaatgcgtttgaaagactcgttgggcttcttgagatatat-----gca-ttgatgatgagc 292  Q
    |||| ||  | |||||||    | ||| | || | |||||||| | ||||||||||   ||||||||  | ||||||       ||| || ||||| |||    
T  33643835 caaacacatgaaaggatacatatgccagtcaacatatcttaattcctttgaaagacaacttgggctttctaagatatgccaaccgcactttatgatcagc 33643736  T
Q  293 actctaagattactcatttttgacaagtgttcaa 326  Q
    | |||||||||||||||||||||||||| |||||    
T  33643735 aatctaagattactcatttttgacaagtattcaa 33643702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 104 - 193
Target Start/End: Original strand, 33410701 - 33410790
Alignment:
Q  104 agaatttatattaccttcttgtttttccgtagttgtttaatgctgcatttcttcaagatcaattctacaagttcattggggttaaaactt 193  Q
    |||||||||| |||||||||| |||||| ||||||||| | |||||  ||||||||||||||||| ||||||||||| |||| |||||||    
T  33410701 agaatttatagtaccttcttgcttttccatagttgtttgaagctgctattcttcaagatcaattcaacaagttcattagggtgaaaactt 33410790  T

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Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 283 - 387
Target Start/End: Original strand, 33058513 - 33058623
Alignment:
Q  283 gatgatgagcactctaagattactcatttttgacaagtgttcaaagtccacc-----atcttttcatgaat-caaaactatggcttcaacatgtttttcc 376  Q
    ||||| ||||| ||| ||||||||||||||||||||||||||||||||| ||     ||||| |    ||| ||||||||||||||||||||| ||||||    
T  33058513 gatgaagagcaatctgagattactcatttttgacaagtgttcaaagtccgcctcttcatcttctttgtaatacaaaactatggcttcaacatgcttttcc 33058612  T
Q  377 taaagtattgc 387  Q
    ||||| |||||    
T  33058613 taaagcattgc 33058623  T

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Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 281 - 326
Target Start/End: Original strand, 9167705 - 9167750
Alignment:
Q  281 ttgatgatgagcactctaagattactcatttttgacaagtgttcaa 326  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||    
T  9167705 ttgatgatgagcaatctaagactactcatttttgacaagtgttcaa 9167750  T

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Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 283 - 326
Target Start/End: Original strand, 33410916 - 33410959
Alignment:
Q  283 gatgatgagcactctaagattactcatttttgacaagtgttcaa 326  Q
    ||||||||||| ||||||||||||||||||||| ||||||||||    
T  33410916 gatgatgagcaatctaagattactcatttttgaaaagtgttcaa 33410959  T

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Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 282 - 319
Target Start/End: Complemental strand, 31561935 - 31561898
Alignment:
Q  282 tgatgatgagcactctaagattactcatttttgacaag 319  Q
    |||||||||||| |||||||||||||||||||||||||    
T  31561935 tgatgatgagcaatctaagattactcatttttgacaag 31561898  T

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Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 386
Target Start/End: Complemental strand, 33643673 - 33643636
Alignment:
Q  349 caaaactatggcttcaacatgtttttcctaaagtattg 386  Q
    ||||||||||||||||||||| ||||||||||| ||||    
T  33643673 caaaactatggcttcaacatgcttttcctaaagcattg 33643636  T

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Target: chr2 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 26 - 387
Target Start/End: Complemental strand, 17440228 - 17439856
Alignment:
Q  26 aaaaatagagc-attgctttgattaaaagataattgttttcaattggtttatatttctaaaataaacattaat-aataagagaatttatattaccttctt 123  Q
    ||||||||||| ||| | ||||||| |||| ||||||||  |||| ||||||||||| || |||||||||||| |||||||||||||||  |||||||||    
T  17440228 aaaaatagagccattacattgattataagaaaattgtttcgaatttgtttatatttcaaagataaacattaattaataagagaatttatggtaccttctt 17440129  T
Q  124 gtttttccgtagttgtttaatgctgcatttcttcaagatcaattctacaagttcattggggttaaaacttgttggcaaatactggcaaggatatgcctcc 223  Q
    |||||||| ||| | ||||||| |||     | ||| ||||||||||| ||||||||||||| |||||||||||||||||||| | ||||||||     |    
T  17440128 gtttttccataggtttttaatgttgctcccatccaaaatcaattctactagttcattggggtgaaaacttgttggcaaatacttgaaaggatatttaggc 17440029  T
Q  224 cactgaataaatcttaatgcgtttgaaagactcgttgggcttcttgagatatatgcatt---------gatgatgagcactctaagattactcatttttg 314  Q
    |||| || | ||||||||  ||| |||||||   |||||  || |||||||  |||| |         ||||||||||| ||||||||||||||||||||    
T  17440028 cactcaacatatcttaatttgttcgaaagacaacttgggaatcctgagatagttgcagtatggttgacgatgatgagcaatctaagattactcatttttg 17439929  T
Q  315 acaagtgttcaaagtccaccatctt-ttcatgaatcaaaactatggcttcaacatgtttttcctaaagtattgc 387  Q
    |||| ||||||  ||||||| ||||    ||   |||||||||||||||||||||| ||||||||||| |||||    
T  17439928 acaaatgttcagcgtccacc-tcttcagtatatttcaaaactatggcttcaacatgcttttcctaaagcattgc 17439856  T

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Target: scaffold1408 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold1408
Description:

Target: scaffold1408; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 99 - 217
Target Start/End: Original strand, 1385 - 1503
Alignment:
Q  99 ataagagaatttatattaccttcttgtttttccgtagttgtttaatgctgcatttcttcaagatcaattctacaagttcattggggttaaaacttgttgg 198  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||||| || | ||  ||| ||||||||||||||||||   |||| |||||||| |||    
T  1385 ataagagaatttatagtaccttcttgtttttccatagttgtttaatgcagcttctcaccaaaatcaattctacaagttcagcagggtgaaaacttgatgg 1484  T
Q  199 caaatactggcaaggatat 217  Q
    || ||||| | ||||||||    
T  1485 cagatacttgaaaggatat 1503  T

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Target: scaffold0428 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 99 - 217
Target Start/End: Original strand, 7131 - 7249
Alignment:
Q  99 ataagagaatttatattaccttcttgtttttccgtagttgtttaatgctgcatttcttcaagatcaattctacaagttcattggggttaaaacttgttgg 198  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||||| || | ||  ||| ||||||||||||||||||   |||| |||||||| |||    
T  7131 ataagagaatttatagtaccttcttgtttttccatagttgtttaatgcagcttctcaccaaaatcaattctacaagttcagcagggtgaaaacttgatgg 7230  T
Q  199 caaatactggcaaggatat 217  Q
    || ||||| | ||||||||    
T  7231 cagatacttgaaaggatat 7249  T

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Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 101 - 217
Target Start/End: Original strand, 31157992 - 31158108
Alignment:
Q  101 aagagaatttatattaccttcttgtttttccgtagttgtttaatgctgcatttcttcaagatcaattctacaagttcattggggttaaaacttgttggca 200  Q
    ||||||||||||| ||||||||||| ||||| ||||||||| | |||||  | | ||| ||||||||| ||||||| |||||| | ||||| || |||||    
T  31157992 aagagaatttatagtaccttcttgtctttccatagttgtttgacgctgctatgcctcatgatcaattcaacaagttgattgggctgaaaacatgctggca 31158091  T
Q  201 aatactggcaaggatat 217  Q
    |||||| | ||||||||    
T  31158092 aatacttgaaaggatat 31158108  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 338 - 387
Target Start/End: Complemental strand, 31478037 - 31477988
Alignment:
Q  338 ttttcatgaatcaaaactatggcttcaacatgtttttcctaaagtattgc 387  Q
    ||||||||| |||||||||||||||||||||  ||||||||||| |||||    
T  31478037 ttttcatgattcaaaactatggcttcaacattcttttcctaaagcattgc 31477988  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 95 - 217
Target Start/End: Original strand, 31149112 - 31149234
Alignment:
Q  95 aataataagagaatttatattaccttcttgtttttccgtagttgtttaatgctgcatttcttcaagatcaattctacaagttcattggggttaaaacttg 194  Q
    ||||| |||||||| |||| ||||||||| | ||||| ||| ||||| |  ||||  | | ||||||||||||| ||||||| ||| ||   ||||||||    
T  31149112 aataaaaagagaatgtatagtaccttcttatctttccatagctgtttgacactgctatacctcaagatcaattcgacaagttgattaggcagaaaacttg 31149211  T
Q  195 ttggcaaatactggcaaggatat 217  Q
     ||||||||||| | ||||||||    
T  31149212 atggcaaatacttgaaaggatat 31149234  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 217
Target Start/End: Complemental strand, 31503459 - 31503338
Alignment:
Q  96 ataataagagaatttatattaccttcttgtttttccgtagttgtttaatgctgcatttcttcaagatcaattctacaagttcattggggttaaaacttgt 195  Q
    ||||| |||| ||||| | ||||||||||| || || || |||||  |||||||   ||||||||||||| || ||||||| ||| || | ||||||||     
T  31503459 ataattagaggatttagagtaccttcttgtcttcccataattgttcgatgctgctactcttcaagatcaactcaacaagttgatttggctgaaaacttga 31503360  T
Q  196 tggcaaatactggcaaggatat 217  Q
     |||||||||| | ||||||||    
T  31503359 cggcaaatacttgaaaggatat 31503338  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 101 - 149
Target Start/End: Complemental strand, 31491114 - 31491066
Alignment:
Q  101 aagagaatttatattaccttcttgtttttccgtagttgtttaatgctgc 149  Q
    ||||||||||||| ||||||||||| ||||| ||||||| | |||||||    
T  31491114 aagagaatttatagtaccttcttgtctttccatagttgtgtgatgctgc 31491066  T

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