View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15783_high_5 (Length: 325)
Name: NF15783_high_5
Description: NF15783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15783_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 39824352 - 39824048
Alignment:
| Q |
1 |
tttgatggaagcaagtttgggtctaaagctacttcagcaagatagttatccagcaatttggataccttaagaattgagctttgttttggcgatcctgggc |
100 |
Q |
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| T |
39824352 |
tttgatggaagcaagtttgggtctaaagctacttcagcaagatagttatccagcaatttggataccttaagaattgagctttgttttggcgatcctgggc |
39824253 |
T |
|
| Q |
101 |
tatcaaaatcataaaccatttcagtttcatctctcattcggctatcgtcctcatcctcctcatccaagttaagaaaaatggaaaaaatcctcacaattga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39824252 |
tatcaaaatcataaaccatttcagtttcatctctcattcggctatcgtcctcatcctcctcatccaagttaagaaaaatggaaaaaatcctcacaattga |
39824153 |
T |
|
| Q |
201 |
gtctgtatcatagatagtactgctgtggttattattttgatataaacttgttggaatcagaatatcttcaagaattgcttggtcaagttgcagaccaatc |
300 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39824152 |
gtctgtatcatagatagtactgctgtggttattgttttgatataaacttgttggaatcagaatatcttcaagaattgcttggtcaagttgcagaccaatc |
39824053 |
T |
|
| Q |
301 |
cttct |
305 |
Q |
| |
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||||| |
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| T |
39824052 |
cttct |
39824048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 44047656 - 44047768
Alignment:
| Q |
1 |
tttgatggaagcaagtttgggtctaaagctacttcagcaagatagttatccagcaatttggataccttaagaattgagctttgttttggcgatcctgggc |
100 |
Q |
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|||||||| | |||||||| ||||| ||||||||||| ||| | || || || ||||||||||||||||||||||||||||||||||| ||||| || | |
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| T |
44047656 |
tttgatggcaacaagtttgagtctagtgctacttcagcgagaaaattgtcaagtaatttggataccttaagaattgagctttgttttggagatccaggac |
44047755 |
T |
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| Q |
101 |
tatcaaaatcata |
113 |
Q |
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| T |
44047756 |
tgtcaaattcata |
44047768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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