View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15783_high_9 (Length: 264)
Name: NF15783_high_9
Description: NF15783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15783_high_9 |
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| [»] scaffold0769 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 166; Significance: 6e-89; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 15 - 248
Target Start/End: Original strand, 34641352 - 34641589
Alignment:
| Q |
15 |
actatgaagaaacagattaaaattgaaaagtgattttgtaaccatctatgcaa----attgatactagacacttgagaaagttataactctcaagtatca |
110 |
Q |
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| T |
34641352 |
actatgaagaaacaaattaaaattgaaaagtgattttgtaaccatctatgcaattaaattgatactaaacacttgagaaagttataactctcaagtatca |
34641451 |
T |
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| Q |
111 |
atctaatatcagtaattatgagcatgccttgtgatgatgtaaannnnnnnnnnnnnaaaagaaaagctgtttatcaattgctattttgattgacaatgat |
210 |
Q |
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| T |
34641452 |
atctaatatcagtaattatgagcatgccttgtgatgatgtaaatttttatttttttaaaagaaaagctgtttatcaattgctatttagattgacaatgat |
34641551 |
T |
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| Q |
211 |
tatcaaagaacaaagcaaaggactatcgttgactacac |
248 |
Q |
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| T |
34641552 |
tatcaaagaacaaagcaaaggactatcgtggactacac |
34641589 |
T |
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Target: chr2; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 17 - 152
Target Start/End: Original strand, 34634379 - 34634514
Alignment:
| Q |
17 |
tatgaagaaacagattaaaattgaaaagtgattttgtaaccatctatgcaaattgatactagacacttgagaaagttataactctcaagtatcaatctaa |
116 |
Q |
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|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||| |
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| T |
34634379 |
tatgcagaaacagattaaaattgaaaagtgagtttgtaaccatctatgcaaattgatactaaaaacttaagaaagttataactctcaagtatcaatctaa |
34634478 |
T |
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| Q |
117 |
tatcagtaattatgagcatgccttgtgatgatgtaa |
152 |
Q |
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| T |
34634479 |
tatcagtaattatgagcatgccttgtgatgatgtaa |
34634514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0769 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: scaffold0769
Description:
Target: scaffold0769; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 17 - 152
Target Start/End: Complemental strand, 5535 - 5400
Alignment:
| Q |
17 |
tatgaagaaacagattaaaattgaaaagtgattttgtaaccatctatgcaaattgatactagacacttgagaaagttataactctcaagtatcaatctaa |
116 |
Q |
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|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||| |
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| T |
5535 |
tatgcagaaacagattaaaattgaaaagtgagtttgtaaccatctatgcaaattgatactaaaaacttaagaaagttataactctcaagtatcaatctaa |
5436 |
T |
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| Q |
117 |
tatcagtaattatgagcatgccttgtgatgatgtaa |
152 |
Q |
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| T |
5435 |
tatcagtaattatgagcatgccttgtgatgatgtaa |
5400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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