View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15783_low_1 (Length: 480)

Name: NF15783_low_1
Description: NF15783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15783_low_1
NF15783_low_1
[»] chr6 (18 HSPs)
chr6 (9-387)||(33359382-33359760)
chr6 (26-381)||(33263317-33263679)
chr6 (17-387)||(33286219-33286599)
chr6 (17-217)||(31562021-31562222)
chr6 (17-255)||(9167440-9167679)
chr6 (95-387)||(33401373-33401671)
chr6 (36-217)||(33058254-33058438)
chr6 (52-206)||(33305193-33305347)
chr6 (66-387)||(33388768-33389098)
chr6 (23-326)||(33272481-33272789)
chr6 (86-202)||(33643832-33643952)
chr6 (99-326)||(33643702-33643935)
chr6 (104-193)||(33410701-33410790)
chr6 (283-387)||(33058513-33058623)
chr6 (281-326)||(9167705-9167750)
chr6 (283-326)||(33410916-33410959)
chr6 (282-319)||(31561898-31561935)
chr6 (349-386)||(33643636-33643673)
[»] chr2 (1 HSPs)
chr2 (26-387)||(17439856-17440228)
[»] scaffold1408 (1 HSPs)
scaffold1408 (99-217)||(1385-1503)
[»] scaffold0428 (1 HSPs)
scaffold0428 (99-217)||(7131-7249)
[»] chr4 (5 HSPs)
chr4 (101-217)||(31157992-31158108)
chr4 (338-387)||(31477988-31478037)
chr4 (95-217)||(31149112-31149234)
chr4 (96-217)||(31503338-31503459)
chr4 (101-149)||(31491066-31491114)


Alignment Details
Target: chr6 (Bit Score: 355; Significance: 0; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 9 - 387
Target Start/End: Original strand, 33359382 - 33359760
Alignment:
Q  9 gtgagatgaaaaccaacaaaaatagagcattgctttgattaaaagataattgttttcaattggtttatatttctaaaataaacattaataataagagaat 108  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  33359382 gtgacatgaaaaccaacaaaactagagcattgctttgattaaaagataattattttcaattggtttatatttctaaaataaacattaataataagagaat 33359481  T
Q  109 ttatattaccttcttgtttttccgtagttgtttaatgctgcatttcttcaagatcaattctacaagttcattggggttaaaacttgttggcaaatactgg 208  Q
    ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  33359482 ttatattaccttcttgtttttccatagttgtttaatgctgcttttcttcaagatcaattctacaagttcattggagttaaaacttgttggcaaatactgg 33359581  T
Q  209 caaggatatgcctcccactgaataaatcttaatgcgtttgaaagactcgttgggcttcttgagatatatgcattgatgatgagcactctaagattactca 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33359582 caaggatatgcctcccactgaataaatcttaatgcgtttgaaagactcgttgggcttcttgagatatatgcattgatgatgagcactctaagattactca 33359681  T
Q  309 tttttgacaagtgttcaaagtccaccatcttttcatgaatcaaaactatggcttcaacatgtttttcctaaagtattgc 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33359682 tttttgacaagtgttcaaagtccaccatcttttcatgaatcaaaactatggcttcaacatgtttttcctaaagtattgc 33359760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 26 - 381
Target Start/End: Original strand, 33263317 - 33263679
Alignment:
Q  26 aaaaatagagc-attgctttgattaaaagataattgttttcaattggtttatatttctaaaataa---acattaataataagagaatttatattaccttc 121  Q
    ||||||||||| ||| ||||||||| |||| ||||||||  |||| | |||||||||||| || |   | |||||||||||||||||||||| |||||||    
T  33263317 aaaaatagagccattactttgattataagagaattgtttcgaatttggttatatttctaagatgatgaatattaataataagagaatttatagtaccttc 33263416  T
Q  122 ttgtttttccgtagttgtttaatgctgcatttcttcaagatcaattctacaagttcattggggttaaaacttgttggcaaatactggcaaggatatgcct 221  Q
    |||||||||| ||||||| ||||| ||| ||||  ||||||||||||||||||||||||||||| |||||||| |||||||||||   |||||||| | |    
T  33263417 ttgtttttccatagttgtgtaatgttgcttttcaccaagatcaattctacaagttcattggggtgaaaacttgatggcaaatactttgaaggatattcat 33263516  T
Q  222 cccactgaataaatcttaatgcgtttgaaagactcgttgggcttcttgagatata---tgcat---tgatgatgagcactctaagattactcatttttga 315  Q
    |||||| || | |||| |||  |||||||||||   ||||||||| |||||||||   | | |   |||||||||||| |||||||||||||||||||||    
T  33263517 cccactcaacatatctcaatttgtttgaaagacaacttgggcttcctgagatatacattccgtacctgatgatgagcaatctaagattactcatttttga 33263616  T
Q  316 caagtgttcaaagtccaccatcttttcatgaatcaaaactatggcttcaacatgtttttcctaaag 381  Q
    ||| ||||||| ||||||   || ||||| |  |||||||||||||| ||| || |||||||||||    
T  33263617 caattgttcaacgtccac---ctcttcatcatccaaaactatggctttaacttgcttttcctaaag 33263679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 17 - 387
Target Start/End: Original strand, 33286219 - 33286599
Alignment:
Q  17 aaaaccaacaaaaatagagc-attgctttgattaaaagataattgttttcaattggtttatatttctaaaataaacattaataataagagaatttatatt 115  Q
    ||||| ||||||||| |||| |||  |||||||  |||| ||||||||  |||| |||||||||||||| || |||||| ||||||||| |||||||| |    
T  33286219 aaaacaaacaaaaatggagccattaatttgattttaagagaattgtttcaaatttgtttatatttctaagatgaacatttataataagataatttatagt 33286318  T
Q  116 accttcttgtttttccgtagttgtttaatgctgcatttcttcaagatcaattctacaagttcattggggttaaaacttgttggcaaatactggcaaggat 215  Q
    |||||||| ||| ||| ||||||||||||| |||   | | ||||||||||||||||||||||||||||| |||| ||| ||||||||| | | ||||||    
T  33286319 accttcttctttctccatagttgtttaatgttgctactatgcaagatcaattctacaagttcattggggtgaaaatttgatggcaaatatttgaaaggat 33286418  T
Q  216 atgcctcccactgaataaatcttaatgcgtttgaaagactcgttgggcttcttgagatatatgca------ttgatgatgagcactctaagattactcat 309  Q
    || |   |||||||| | ||||||||  |||||||||||||  | ||||||  |||||||   ||       |||||||||||| |||||||||||||||    
T  33286419 atccagtccactgaacatatcttaatttgtttgaaagactcaataggcttccggagatattcacaccccacatgatgatgagcaatctaagattactcat 33286518  T
Q  310 ttttgacaagtgttcaaagtcca---ccatcttttcatgaatcaaaactatggcttcaacatgtttttcctaaagtattgc 387  Q
    |||||||||||||||||  | ||   | | || ||||| | ||||||||| ||||| |||||| ||||||||||| |||||    
T  33286519 ttttgacaagtgttcaacattcaatccaacctcttcatcattcaaaactaaggctttaacatgcttttcctaaagcattgc 33286599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 17 - 217
Target Start/End: Complemental strand, 31562222 - 31562021
Alignment:
Q  17 aaaaccaacaaaaatagagc-attgctttgattaaaagataattgttttcaattggtttatatttctaaaataaacattaataataagagaatttatatt 115  Q
    ||||| |||||||||||||| ||| |||||||||||||||||||||||  |||| ||||||| |||||| ||||  | ||||||||||| |||||| | |    
T  31562222 aaaacaaacaaaaatagagccattactttgattaaaagataattgtttctaatttgtttatagttctaagataattagtaataataagataatttacagt 31562123  T
Q  116 accttcttgtttttccgtagttgtttaatgctgcatttcttcaagatcaattctacaagttcattggggttaaaacttgttggcaaatactggcaaggat 215  Q
    |||||||||||| ||| ||||||  ||||||||| | ||  ||||||||||||||||||||||| ||||| |||||||| ||||||||||| | ||||||    
T  31562122 accttcttgtttgtccatagttgcgtaatgctgcttctcgccaagatcaattctacaagttcataggggtgaaaacttgatggcaaatacttgaaaggat 31562023  T
Q  216 at 217  Q
    ||    
T  31562022 at 31562021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 17 - 255
Target Start/End: Original strand, 9167440 - 9167679
Alignment:
Q  17 aaaaccaacaaaaatagagc-attgctttgattaaaagataattgttttcaattggtttatatttctaaaataaacattaataataagagaatttatatt 115  Q
    |||||||||||||||||||| ||| ||||||||  |||| ||||||||  |||| |||||||||||||||||||||  ||||||||||||| |||||| |    
T  9167440 aaaaccaacaaaaatagagccattactttgattgtaagaaaattgtttcgaatttgtttatatttctaaaataaacggtaataataagagagtttatagt 9167539  T
Q  116 accttcttgtttttccgtagttgtttaatgctgcatttcttcaagatcaattctacaagttcattggggttaaaacttgttggcaaatactggcaaggat 215  Q
    ||||| |||||||||| ||||||||||||| |||     |||||||||| || |||||||||||||| || |||||| | ||||||||||| | ||||||    
T  9167540 acctttttgtttttccatagttgtttaatgttgctccagttcaagatcagttgtacaagttcattggcgtgaaaactcgatggcaaatacttgaaaggat 9167639  T
Q  216 atgcctcccactgaataaatcttaatgcgtttgaaagact 255  Q
    ||   | ||||| || | |||||||| |||| ||||||||    
T  9167640 atcgataccactcaagatatcttaattcgttcgaaagact 9167679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 95 - 387
Target Start/End: Original strand, 33401373 - 33401671
Alignment:
Q  95 aataataagagaatttatattaccttcttgtttttccgtagttgtttaatgctgcatttcttcaagatcaattctacaagttcattggggttaaaacttg 194  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||    |  ||||||||||||||||||||||||||||| ||||||||    
T  33401373 aataataagagaatttatagtaccttcttgtttttccatagttgtttaatgttgctacaccacaagatcaattctacaagttcattggggtgaaaacttg 33401472  T
Q  195 ttggcaaatactggcaaggatatgcctcccactgaataaatcttaatgcgtttgaaagactcgttgggcttcttgagatat-----atgca-ttgatgat 288  Q
    |||||||||||| | |||||||| | | ||| | || | |||||||| |||||||||||    ||| || || ||||||||      |||| ||||||||    
T  33401473 ttggcaaatacttgaaaggatattcatgccaatcaacatatcttaattcgtttgaaagaaaatttgagcctcctgagatattccaattgcacttgatgat 33401572  T
Q  289 gagcactctaagattactcatttttgacaagtgttcaaagtccaccatctt-ttcatgaatcaaaactatggcttcaacatgtttttcctaaagtattgc 387  Q
    ||| | ||||||||||||||||||||| ||||||||||  |||||| ||||  | | |  |||||| ||||||||||||||  ||||||||||| |||||    
T  33401573 gagaagtctaagattactcatttttgataagtgttcaacatccacc-tcttcattacgtttcaaaagtatggcttcaacattcttttcctaaagcattgc 33401671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 36 - 217
Target Start/End: Original strand, 33058254 - 33058438
Alignment:
Q  36 cattgctttgattaaaagataattgttttcaattggtttatatttctaaaat---aaacattaataataagagaatttatattaccttcttgtttttccg 132  Q
    |||| ||||||||  |||| ||||||||| |||| |||||||||||||| ||   ||| ||||||||||| |||||||||| |||||||||||||||||     
T  33058254 cattactttgattgtaagagaattgttttgaatttgtttatatttctaagatgataaatattaataataatagaatttatagtaccttcttgtttttcca 33058353  T
Q  133 tagttgtttaatgctgcatttcttcaagatcaattctacaagttcattggggttaaaacttgttggcaaatactggcaaggatat 217  Q
    ||||||||||||| |||  | | |||||||||||||||||||||||||||||| |||| ||| ||||||||||| | ||||||||    
T  33058354 tagttgtttaatgttgctctccgtcaagatcaattctacaagttcattggggtgaaaatttgatggcaaatacttggaaggatat 33058438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 52 - 206
Target Start/End: Original strand, 33305193 - 33305347
Alignment:
Q  52 agataattgttttcaattggtttatatttctaaaataaacattaataataagagaatttatattaccttcttgtttttccgtagttgtttaatgctgcat 151  Q
    ||||||||||||  | || |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||| |||||||| |||  |||      
T  33305193 agataattgtttcaattttgtttatatttctaagataaacattaataataagagaatttatagtaccttcttgtttgtccatagttgttcaattttgctg 33305292  T
Q  152 ttcttcaagatcaattctacaagttcattggggttaaaacttgttggcaaatact 206  Q
     |||| |||||||||||||||||||||||||||| |||| ||| |||||||||||    
T  33305293 ctctttaagatcaattctacaagttcattggggtgaaaatttgatggcaaatact 33305347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 66 - 387
Target Start/End: Original strand, 33388768 - 33389098
Alignment:
Q  66 aattggtttatatttctaaaataaacattaataataagagaatttatattaccttcttgtttttccgtagttgtttaatgctgcatttcttcaagatcaa 165  Q
    |||| |||||||||||||| ||||||||||||||| |   ||| |||| |||||||||||| |||| ||||||||| |||  ||  | | ||||||||||    
T  33388768 aatttgtttatatttctaagataaacattaataatca---aatgtataataccttcttgttcttccatagttgtttgatgtcgctatacatcaagatcaa 33388864  T
Q  166 ttctacaagttcattggggttaaaacttgttggcaaatactggcaaggatatgcctcccactgaataaatcttaatgcgtttgaaagactcgttgggctt 265  Q
     |||||||| ||| |||||| |||||||| ||||||||||| | |||||||    | ||||| || | ||||||||| |||||||||||||| ||||||     
T  33388865 ctctacaagatcactggggtgaaaacttgatggcaaatacttgaaaggataataattccactcaacatatcttaatgtgtttgaaagactcgatgggcta 33388964  T
Q  266 cttgagatatatgca------ttgatgatgagcactctaagattactcatttttgacaagtgttcaaagtccaccatctt-------ttcatgaatcaaa 352  Q
    |||| |||||  | |      ||||||||||| | |||||||||||||||||||||||| ||||||| ||||||| ||||        |||| | |||||    
T  33388965 cttgggatattcggaccccacttgatgatgagtaatctaagattactcatttttgacaactgttcaacgtccacc-tcttcaacatcatcatcattcaaa 33389063  T
Q  353 actatggcttcaacatgtttttcctaaagtattgc 387  Q
    |||||||||||||||||  |||||||||| |||||    
T  33389064 actatggcttcaacatgcctttcctaaagcattgc 33389098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 23 - 326
Target Start/End: Original strand, 33272481 - 33272789
Alignment:
Q  23 aacaaaaatagagc-attgctttgattaaaagataattgttttcaattggtttatatttctaaaataaacattaataataagagaatttatat-tacctt 120  Q
    |||||||||||| | ||| | ||||||  |||| ||||||||  |||| |||||||||||||| ||||||||||||||||   |||||||||  ||||||    
T  33272481 aacaaaaatagaaccattacattgattctaagagaattgtttcaaatttgtttatatttctaagataaacattaataata---gaatttataggtacctt 33272577  T
Q  121 cttgtttttccgtagttgtttaatgctgcatttcttcaagatcaattctacaagttcattggggttaaaacttgttggcaaatactggcaaggatatgcc 220  Q
    ||||||||||| ||||||||| |||  ||  ||| ||||||||||||||| ||| |||||||||| |||||||||||| | | ||| | |||||||| |     
T  33272578 cttgtttttccatagttgtttgatgtcgctattcatcaagatcaattctataaggtcattggggtgaaaacttgttggtagacacttgaaaggatatcca 33272677  T
Q  221 tcccactgaataaatcttaatgcgtttgaaagactcgttgggcttcttgagatat-----atgca-ttgatgatgagcactctaagattactcatttttg 314  Q
    ||||||| || | |||||||||| |||||||| |||| | | || | || |||||       ||| ||||| ||||||| ||||||||||||||||||||    
T  33272678 tcccactcaacatatcttaatgcatttgaaaggctcgatagactacctgggatattccgaccgcacttgattatgagcaatctaagattactcatttttg 33272777  T
Q  315 acaagtgttcaa 326  Q
     |||||||||||    
T  33272778 ccaagtgttcaa 33272789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 86 - 202
Target Start/End: Complemental strand, 33643952 - 33643832
Alignment:
Q  86 ataaacattaata----ataagagaatttatattaccttcttgtttttccgtagttgtttaatgctgcatttcttcaagatcaattctacaagttcattg 181  Q
    |||||||||||||    ||||||||||||||||||||||||||||||||| ||||||| ||||| |||  |||||||||| |||||||||||||| ||||    
T  33643952 ataaacattaataatatataagagaatttatattaccttcttgtttttccatagttgtctaatgttgctcttcttcaagaacaattctacaagttgattg 33643853  T
Q  182 gggttaaaacttgttggcaaa 202  Q
    || | |||| ||| |||||||    
T  33643852 ggctgaaaatttgatggcaaa 33643832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 99 - 326
Target Start/End: Complemental strand, 33643935 - 33643702
Alignment:
Q  99 ataagagaatttatattaccttcttgtttttccgtagttgtttaatgctgcatttcttcaagatcaattctacaagttcattggggttaaaacttgttgg 198  Q
    ||||||||||||||||||||||||||||||||| ||||||| ||||| |||  |||||||||| |||||||||||||| |||||| | |||| ||| |||    
T  33643935 ataagagaatttatattaccttcttgtttttccatagttgtctaatgttgctcttcttcaagaacaattctacaagttgattgggctgaaaatttgatgg 33643836  T
Q  199 caaatactggcaaggatatgcctcccactgaataaatcttaatgcgtttgaaagactcgttgggcttcttgagatatat-----gca-ttgatgatgagc 292  Q
    |||| ||  | |||||||    | ||| | || | |||||||| | ||||||||||   ||||||||  | ||||||       ||| || ||||| |||    
T  33643835 caaacacatgaaaggatacatatgccagtcaacatatcttaattcctttgaaagacaacttgggctttctaagatatgccaaccgcactttatgatcagc 33643736  T
Q  293 actctaagattactcatttttgacaagtgttcaa 326  Q
    | |||||||||||||||||||||||||| |||||    
T  33643735 aatctaagattactcatttttgacaagtattcaa 33643702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 104 - 193
Target Start/End: Original strand, 33410701 - 33410790
Alignment:
Q  104 agaatttatattaccttcttgtttttccgtagttgtttaatgctgcatttcttcaagatcaattctacaagttcattggggttaaaactt 193  Q
    |||||||||| |||||||||| |||||| ||||||||| | |||||  ||||||||||||||||| ||||||||||| |||| |||||||    
T  33410701 agaatttatagtaccttcttgcttttccatagttgtttgaagctgctattcttcaagatcaattcaacaagttcattagggtgaaaactt 33410790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 283 - 387
Target Start/End: Original strand, 33058513 - 33058623
Alignment:
Q  283 gatgatgagcactctaagattactcatttttgacaagtgttcaaagtccacc-----atcttttcatgaat-caaaactatggcttcaacatgtttttcc 376  Q
    ||||| ||||| ||| ||||||||||||||||||||||||||||||||| ||     ||||| |    ||| ||||||||||||||||||||| ||||||    
T  33058513 gatgaagagcaatctgagattactcatttttgacaagtgttcaaagtccgcctcttcatcttctttgtaatacaaaactatggcttcaacatgcttttcc 33058612  T
Q  377 taaagtattgc 387  Q
    ||||| |||||    
T  33058613 taaagcattgc 33058623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 281 - 326
Target Start/End: Original strand, 9167705 - 9167750
Alignment:
Q  281 ttgatgatgagcactctaagattactcatttttgacaagtgttcaa 326  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||    
T  9167705 ttgatgatgagcaatctaagactactcatttttgacaagtgttcaa 9167750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 283 - 326
Target Start/End: Original strand, 33410916 - 33410959
Alignment:
Q  283 gatgatgagcactctaagattactcatttttgacaagtgttcaa 326  Q
    ||||||||||| ||||||||||||||||||||| ||||||||||    
T  33410916 gatgatgagcaatctaagattactcatttttgaaaagtgttcaa 33410959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 282 - 319
Target Start/End: Complemental strand, 31561935 - 31561898
Alignment:
Q  282 tgatgatgagcactctaagattactcatttttgacaag 319  Q
    |||||||||||| |||||||||||||||||||||||||    
T  31561935 tgatgatgagcaatctaagattactcatttttgacaag 31561898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 386
Target Start/End: Complemental strand, 33643673 - 33643636
Alignment:
Q  349 caaaactatggcttcaacatgtttttcctaaagtattg 386  Q
    ||||||||||||||||||||| ||||||||||| ||||    
T  33643673 caaaactatggcttcaacatgcttttcctaaagcattg 33643636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 26 - 387
Target Start/End: Complemental strand, 17440228 - 17439856
Alignment:
Q  26 aaaaatagagc-attgctttgattaaaagataattgttttcaattggtttatatttctaaaataaacattaat-aataagagaatttatattaccttctt 123  Q
    ||||||||||| ||| | ||||||| |||| ||||||||  |||| ||||||||||| || |||||||||||| |||||||||||||||  |||||||||    
T  17440228 aaaaatagagccattacattgattataagaaaattgtttcgaatttgtttatatttcaaagataaacattaattaataagagaatttatggtaccttctt 17440129  T
Q  124 gtttttccgtagttgtttaatgctgcatttcttcaagatcaattctacaagttcattggggttaaaacttgttggcaaatactggcaaggatatgcctcc 223  Q
    |||||||| ||| | ||||||| |||     | ||| ||||||||||| ||||||||||||| |||||||||||||||||||| | ||||||||     |    
T  17440128 gtttttccataggtttttaatgttgctcccatccaaaatcaattctactagttcattggggtgaaaacttgttggcaaatacttgaaaggatatttaggc 17440029  T
Q  224 cactgaataaatcttaatgcgtttgaaagactcgttgggcttcttgagatatatgcatt---------gatgatgagcactctaagattactcatttttg 314  Q
    |||| || | ||||||||  ||| |||||||   |||||  || |||||||  |||| |         ||||||||||| ||||||||||||||||||||    
T  17440028 cactcaacatatcttaatttgttcgaaagacaacttgggaatcctgagatagttgcagtatggttgacgatgatgagcaatctaagattactcatttttg 17439929  T
Q  315 acaagtgttcaaagtccaccatctt-ttcatgaatcaaaactatggcttcaacatgtttttcctaaagtattgc 387  Q
    |||| ||||||  ||||||| ||||    ||   |||||||||||||||||||||| ||||||||||| |||||    
T  17439928 acaaatgttcagcgtccacc-tcttcagtatatttcaaaactatggcttcaacatgcttttcctaaagcattgc 17439856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1408 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold1408
Description:

Target: scaffold1408; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 99 - 217
Target Start/End: Original strand, 1385 - 1503
Alignment:
Q  99 ataagagaatttatattaccttcttgtttttccgtagttgtttaatgctgcatttcttcaagatcaattctacaagttcattggggttaaaacttgttgg 198  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||||| || | ||  ||| ||||||||||||||||||   |||| |||||||| |||    
T  1385 ataagagaatttatagtaccttcttgtttttccatagttgtttaatgcagcttctcaccaaaatcaattctacaagttcagcagggtgaaaacttgatgg 1484  T
Q  199 caaatactggcaaggatat 217  Q
    || ||||| | ||||||||    
T  1485 cagatacttgaaaggatat 1503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 99 - 217
Target Start/End: Original strand, 7131 - 7249
Alignment:
Q  99 ataagagaatttatattaccttcttgtttttccgtagttgtttaatgctgcatttcttcaagatcaattctacaagttcattggggttaaaacttgttgg 198  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||||| || | ||  ||| ||||||||||||||||||   |||| |||||||| |||    
T  7131 ataagagaatttatagtaccttcttgtttttccatagttgtttaatgcagcttctcaccaaaatcaattctacaagttcagcagggtgaaaacttgatgg 7230  T
Q  199 caaatactggcaaggatat 217  Q
    || ||||| | ||||||||    
T  7231 cagatacttgaaaggatat 7249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 101 - 217
Target Start/End: Original strand, 31157992 - 31158108
Alignment:
Q  101 aagagaatttatattaccttcttgtttttccgtagttgtttaatgctgcatttcttcaagatcaattctacaagttcattggggttaaaacttgttggca 200  Q
    ||||||||||||| ||||||||||| ||||| ||||||||| | |||||  | | ||| ||||||||| ||||||| |||||| | ||||| || |||||    
T  31157992 aagagaatttatagtaccttcttgtctttccatagttgtttgacgctgctatgcctcatgatcaattcaacaagttgattgggctgaaaacatgctggca 31158091  T
Q  201 aatactggcaaggatat 217  Q
    |||||| | ||||||||    
T  31158092 aatacttgaaaggatat 31158108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 338 - 387
Target Start/End: Complemental strand, 31478037 - 31477988
Alignment:
Q  338 ttttcatgaatcaaaactatggcttcaacatgtttttcctaaagtattgc 387  Q
    ||||||||| |||||||||||||||||||||  ||||||||||| |||||    
T  31478037 ttttcatgattcaaaactatggcttcaacattcttttcctaaagcattgc 31477988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 95 - 217
Target Start/End: Original strand, 31149112 - 31149234
Alignment:
Q  95 aataataagagaatttatattaccttcttgtttttccgtagttgtttaatgctgcatttcttcaagatcaattctacaagttcattggggttaaaacttg 194  Q
    ||||| |||||||| |||| ||||||||| | ||||| ||| ||||| |  ||||  | | ||||||||||||| ||||||| ||| ||   ||||||||    
T  31149112 aataaaaagagaatgtatagtaccttcttatctttccatagctgtttgacactgctatacctcaagatcaattcgacaagttgattaggcagaaaacttg 31149211  T
Q  195 ttggcaaatactggcaaggatat 217  Q
     ||||||||||| | ||||||||    
T  31149212 atggcaaatacttgaaaggatat 31149234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 217
Target Start/End: Complemental strand, 31503459 - 31503338
Alignment:
Q  96 ataataagagaatttatattaccttcttgtttttccgtagttgtttaatgctgcatttcttcaagatcaattctacaagttcattggggttaaaacttgt 195  Q
    ||||| |||| ||||| | ||||||||||| || || || |||||  |||||||   ||||||||||||| || ||||||| ||| || | ||||||||     
T  31503459 ataattagaggatttagagtaccttcttgtcttcccataattgttcgatgctgctactcttcaagatcaactcaacaagttgatttggctgaaaacttga 31503360  T
Q  196 tggcaaatactggcaaggatat 217  Q
     |||||||||| | ||||||||    
T  31503359 cggcaaatacttgaaaggatat 31503338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 101 - 149
Target Start/End: Complemental strand, 31491114 - 31491066
Alignment:
Q  101 aagagaatttatattaccttcttgtttttccgtagttgtttaatgctgc 149  Q
    ||||||||||||| ||||||||||| ||||| ||||||| | |||||||    
T  31491114 aagagaatttatagtaccttcttgtctttccatagttgtgtgatgctgc 31491066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University