View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15783_low_4 (Length: 396)
Name: NF15783_low_4
Description: NF15783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15783_low_4 |
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| [»] chr3 (4 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 368; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 1 - 396
Target Start/End: Original strand, 1624087 - 1624481
Alignment:
| Q |
1 |
ttcgactttttcaagcagtgaatattgttttttctcttataacaagaacataaaacaggaaatgaaatataaatcacctgctgttgcagagctataagtg |
100 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
1624087 |
ttcgactttttcaagcagtgaatattgtttt-tctcttataacaagaacataaaacaggaaatgaaatataattcacctgctgttgcagagctataagtg |
1624185 |
T |
|
| Q |
101 |
gtataaccaccttgaacacttctagaacttgttattatggtattttgcatcccatcaccaaccagcataatattgtcattatgaacagcaacctcaatgt |
200 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1624186 |
gtaaaaccaccttgaacacttctagaacttgttattatggtattttgcatcccatcaccaaccagcataatattgtcattatgaacagcaacctcaatgt |
1624285 |
T |
|
| Q |
201 |
tctctctataaacacctttcttaacatgtatcacaaaccttgtcttatattttctcttagcagcagcatttaaagcagcttgcacagtcttgtactgacc |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1624286 |
tctctctataaacacctttcttaacatgtatcacaaaccttgtcttatattttctcttagcagcagcatttaaagcagcttgcacagtcttgtactgacc |
1624385 |
T |
|
| Q |
301 |
agaaccatcttttgccaccacaagattgtactttactggagacttagactgcaaaagcttcctttcatgcacagaaaaccaatttggaaatgaccc |
396 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1624386 |
agaaccatcttttgccaccacaagattgtactttactggaccctttgactgcaaaagcttcctttcatgcacagaaaaccaatttggaaatgaccc |
1624481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 5 - 396
Target Start/End: Original strand, 1607070 - 1607460
Alignment:
| Q |
5 |
actttttcaagcagtgaatattgttttttctcttataacaagaacataaaacaggaaatgaaatataaatcacctgctgttgcagagctataagtggtat |
104 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
1607070 |
actttttctagcagtgaatattgtttt-tctcttataacaagaacataaaacaggaaatgaaatataattcacctgctgttgcagagctataagtggtaa |
1607168 |
T |
|
| Q |
105 |
aaccaccttgaacacttctagaacttgttattatggtattttgcatcccatcaccaaccagcataatattgtcattatgaacagcaacctcaatgttctc |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1607169 |
aaccaccttgaacacttctagaacttgttattatggtattttgcatcccatcaccaaccagcataatattgtcattatgaacagcaacctcaatgttctc |
1607268 |
T |
|
| Q |
205 |
tctataaacacctttcttaacatgtatcacaaaccttgtcttatattttctcttagcagcagcatttaaagcagcttgcacagtcttgtactgaccagaa |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
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| T |
1607269 |
tctataaacacctttcttaacatgtatcacaaaccttgtcttatattttctcttagcagcagcatttaaagcagcctgcacagtcttgtactgtccagaa |
1607368 |
T |
|
| Q |
305 |
ccatcttttgccaccacaagattgtactttactggagacttagactgcaaaagcttcctttcatgcacagaaaaccaatttggaaatgaccc |
396 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1607369 |
ccatcttttgccaccacaagattgtactttactggaccctttgactgcaaaagcttcctttcatgcacagaaaaccaatttggaaatgaccc |
1607460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 57 - 396
Target Start/End: Original strand, 1630117 - 1630456
Alignment:
| Q |
57 |
aggaaatgaaatataaatcacctgctgttgcagagctataagtggtataaccaccttgaacacttctagaacttgttattatggtattttgcatcccatc |
156 |
Q |
| |
|
|||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1630117 |
aggagatggaatataactcacctgctgttgcagagctataagtggtataaccaccttgaacacttctagaacttgttattatggtattttgcatcccatc |
1630216 |
T |
|
| Q |
157 |
accaaccagcataatattgtcattatgaacagcaacctcaatgttctctctataaacacctttcttaacatgtatcacaaaccttgtcttatattttctc |
256 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1630217 |
accaaccagcataatattgtcattatgaacagcaacctcaatgttctctctataaacacctttcttaacatgtatcacaaaccttgtcttatattttctc |
1630316 |
T |
|
| Q |
257 |
ttagcagcagcatttaaagcagcttgcacagtcttgtactgaccagaaccatcttttgccaccacaagattgtactttactggagacttagactgcaaaa |
356 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1630317 |
ttagcagcagcatttaaagcagcttgcacagtcttgtactgtccagaaccatcttttgccaccacaagattgtactttactggagacttagactgcaaaa |
1630416 |
T |
|
| Q |
357 |
gcttcctttcatgcacagaaaaccaatttggaaatgaccc |
396 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||| |
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| T |
1630417 |
gcttcctttcatgcacagaaaaccaatttgaaaatgaccc |
1630456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 66 - 396
Target Start/End: Complemental strand, 10820153 - 10819823
Alignment:
| Q |
66 |
aatataaatcacctgctgttgcagagctataagtggtataaccaccttgaacacttctagaacttgttattatggtattttgcatcccatcaccaaccag |
165 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||| |
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|
| T |
10820153 |
aatataactcaccggctgttgcagagctataagtggtaaaaccaccttgaacacttctagaacttgttatgatggtattttgcattccatcaccgaccaa |
10820054 |
T |
|
| Q |
166 |
cataatattgtcattatgaacagcaacctcaatgttctctctataaacacctttcttaacatgtatcacaaaccttgtcttatattttctcttagcagca |
265 |
Q |
| |
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|||||| || |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||| |
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| T |
10820053 |
cataatgttatcattatgaacagcaacctcaatgttctctttataaacacctttcttcacatgtatcacataccttgtcttgtattttctcttagcagca |
10819954 |
T |
|
| Q |
266 |
gcatttaaagcagcttgcacagtcttgtactgaccagaaccatcttttgccaccacaagattgtactttactggagacttagactgcaaaagcttccttt |
365 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||| |
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| T |
10819953 |
gcatttaaagcagcttgcacagtcttgtactgtccagaaccatcttttgccaccacaagattgaacttcattggagacttagactgcaaaagcttccttt |
10819854 |
T |
|
| Q |
366 |
catgcacagaaaaccaatttggaaatgaccc |
396 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |
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|
| T |
10819853 |
catgcacagaaaaccaatttggaagtgaccc |
10819823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 5 - 396
Target Start/End: Original strand, 18785117 - 18785507
Alignment:
| Q |
5 |
actttttcaagcagtgaatattgttttttctcttataacaagaacataaaacaggaaatgaaatataaatcacctgctgttgcagagctataagtggtat |
104 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||| |
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| T |
18785117 |
actttttctagcagtgaatattgtttt-tctcttataacaagaacacaaaacaggaaatgaattataattcacctgctgttgcagagctataagtggtaa |
18785215 |
T |
|
| Q |
105 |
aaccaccttgaacacttctagaacttgttattatggtattttgcatcccatcaccaaccagcataatattgtcattatgaacagcaacctcaatgttctc |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||||| ||||| ||||||||||||||||| |
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|
| T |
18785216 |
aaccaccttgaacacttctagaacttgttattatggtattttgcatcccatcaccaaccaacataatgttatcattgtgaaccgcaacctcaatgttctc |
18785315 |
T |
|
| Q |
205 |
tctataaacacctttcttaacatgtatcacaaaccttgtcttatattttctcttagcagcagcatttaaagcagcttgcacagtcttgtactgaccagaa |
304 |
Q |
| |
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| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |
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|
| T |
18785316 |
tttataaacacctttcttcacatgtatcacaaaccttgtcttatattttctcttagcagcagcatttagagcagcttgcacagtcttgtactgtccagaa |
18785415 |
T |
|
| Q |
305 |
ccatcttttgccaccacaagattgtactttactggagacttagactgcaaaagcttcctttcatgcacagaaaaccaatttggaaatgaccc |
396 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
18785416 |
ccatcttttgccaccacaatattgtactttactggagacttagactgcaaaagcttcctttcatgcatagaaaaccaatttggaaatgaccc |
18785507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 76 - 282
Target Start/End: Original strand, 12803384 - 12803590
Alignment:
| Q |
76 |
acctgctgttgcagagctataagtggtataaccaccttgaacacttctagaacttgttattatggtattttgcatcccatcaccaaccagcataatattg |
175 |
Q |
| |
|
|||||| || ||||||||||| || ||| ||||| |||||||| ||||| ||||||||| | |||||| | |||||||| |||| ||||||||| |
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|
| T |
12803384 |
acctgcagtggcagagctataggtagtaaaaccagcttgaacatttctattacttgttatcactgtatttctacttccatcacctaccaacataatatta |
12803483 |
T |
|
| Q |
176 |
tcatt-atgaacagcaacctcaatgttctctctataaacacctttcttaacatgtatcacaaaccttgtcttatattttctcttagcagcagcatttaaa |
274 |
Q |
| |
|
||||| || | ||||| |||| ||||||||||||||||||||||| ||| |||| ||||| ||||| ||| | ||||| | |||||||||||| | |
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| T |
12803484 |
tcattcatcttcc-caaccacaatattctctctataaacacctttcttcacacgtataacaaatcttgttttaaaccttctcctcccagcagcatttata |
12803582 |
T |
|
| Q |
275 |
gcagcttg |
282 |
Q |
| |
|
||| |||| |
|
|
| T |
12803583 |
gcatcttg |
12803590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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