View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15783_low_7 (Length: 309)

Name: NF15783_low_7
Description: NF15783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15783_low_7
NF15783_low_7
[»] chr2 (15 HSPs)
chr2 (127-239)||(26317108-26317220)
chr2 (255-298)||(13553273-13553316)
chr2 (250-287)||(13553310-13553347)
chr2 (245-294)||(40951324-40951373)
chr2 (250-294)||(5167635-5167679)
chr2 (242-290)||(10288290-10288338)
chr2 (250-294)||(19668080-19668124)
chr2 (250-291)||(305861-305902)
chr2 (245-290)||(19637365-19637410)
chr2 (245-290)||(19835958-19836003)
chr2 (245-294)||(21805674-21805723)
chr2 (245-290)||(43650435-43650480)
chr2 (250-294)||(4842412-4842456)
chr2 (250-290)||(11126601-11126641)
chr2 (250-294)||(30856941-30856985)
[»] chr4 (12 HSPs)
chr4 (245-298)||(11997780-11997833)
chr4 (245-294)||(46567063-46567112)
chr4 (244-294)||(54801131-54801181)
chr4 (245-294)||(12638958-12639007)
chr4 (250-295)||(26440796-26440841)
chr4 (250-294)||(16508870-16508914)
chr4 (242-290)||(37977253-37977301)
chr4 (240-294)||(28676037-28676091)
chr4 (245-287)||(55511000-55511042)
chr4 (250-287)||(23836993-23837030)
chr4 (250-282)||(32621763-32621795)
chr4 (250-294)||(40847501-40847545)
[»] chr3 (15 HSPs)
chr3 (250-298)||(462294-462342)
chr3 (244-291)||(32795973-32796020)
chr3 (244-294)||(1901813-1901863)
chr3 (244-294)||(1911259-1911309)
chr3 (245-294)||(7867597-7867646)
chr3 (245-291)||(25959430-25959476)
chr3 (244-290)||(31326846-31326892)
chr3 (254-295)||(16267804-16267845)
chr3 (250-287)||(29800442-29800479)
chr3 (245-294)||(44593100-44593149)
chr3 (250-294)||(981604-981648)
chr3 (244-294)||(34607806-34607856)
chr3 (245-291)||(50294012-50294058)
chr3 (245-294)||(32981009-32981058)
chr3 (245-281)||(47773866-47773902)
[»] chr5 (12 HSPs)
chr5 (240-298)||(91345-91403)
chr5 (245-294)||(24792586-24792635)
chr5 (250-294)||(9636051-9636095)
chr5 (243-294)||(15639519-15639570)
chr5 (243-294)||(36581353-36581404)
chr5 (250-294)||(582762-582806)
chr5 (243-290)||(38387848-38387895)
chr5 (250-294)||(7144709-7144753)
chr5 (245-281)||(20040921-20040957)
chr5 (245-294)||(28904126-28904179)
chr5 (245-294)||(28940521-28940574)
chr5 (246-290)||(36624456-36624500)
[»] scaffold0166 (1 HSPs)
scaffold0166 (245-294)||(34969-35018)
[»] chr7 (11 HSPs)
chr7 (245-294)||(2469826-2469875)
chr7 (243-294)||(9031341-9031392)
chr7 (245-298)||(43079517-43079570)
chr7 (250-294)||(18157078-18157122)
chr7 (250-294)||(43107746-43107790)
chr7 (245-294)||(25940555-25940604)
chr7 (250-294)||(27688771-27688815)
chr7 (254-294)||(30941311-30941351)
chr7 (258-294)||(43444762-43444798)
chr7 (245-290)||(35072133-35072178)
chr7 (243-271)||(41878150-41878178)
[»] chr1 (16 HSPs)
chr1 (245-298)||(27352760-27352813)
chr1 (245-298)||(51172195-51172248)
chr1 (244-294)||(44730778-44730828)
chr1 (245-294)||(48872513-48872562)
chr1 (250-294)||(51339593-51339637)
chr1 (247-290)||(5043186-5043229)
chr1 (244-294)||(25061867-25061917)
chr1 (254-291)||(30530471-30530508)
chr1 (245-294)||(36930644-36930693)
chr1 (245-290)||(49621499-49621544)
chr1 (250-294)||(4604663-4604707)
chr1 (244-290)||(40595941-40595987)
chr1 (245-294)||(30687186-30687235)
chr1 (250-287)||(43611975-43612012)
chr1 (245-294)||(50527945-50527994)
chr1 (245-294)||(16658573-16658626)
[»] chr6 (5 HSPs)
chr6 (250-298)||(8173205-8173253)
chr6 (245-291)||(32730026-32730072)
chr6 (245-291)||(16533147-16533194)
chr6 (245-294)||(21443822-21443871)
chr6 (250-290)||(25567386-25567426)
[»] scaffold0002 (1 HSPs)
scaffold0002 (245-298)||(440848-440901)
[»] chr8 (7 HSPs)
chr8 (250-291)||(5782925-5782966)
chr8 (250-294)||(1796617-1796661)
chr8 (245-294)||(12045541-12045590)
chr8 (250-294)||(36740446-36740490)
chr8 (244-291)||(6005081-6005128)
chr8 (245-290)||(69514-69559)
chr8 (250-278)||(20853069-20853097)


Alignment Details
Target: chr2 (Bit Score: 81; Significance: 4e-38; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 127 - 239
Target Start/End: Complemental strand, 26317220 - 26317108
Alignment:
Q  127 attatcatatagaaacatacgaggatttaatcatgtggcgacaattataagcatattaacacataaaggtgtggagacaattaacctgtgagatcaactt 226  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| | | ||||||| ||||||||||||||    
T  26317220 attatcatatagaaacatatgaggatttaatcatgtggcgacaattataagcatattaacacatagaggtgtgtaaataattaacatgtgagatcaactt 26317121  T
Q  227 gaaaaatgtgaga 239  Q
    | || ||||||||    
T  26317120 ggaacatgtgaga 26317108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 255 - 298
Target Start/End: Complemental strand, 13553316 - 13553273
Alignment:
Q  255 tatttgaacaatcatttggtacaacctatttgacaacctttctt 298  Q
    ||||||||||| |||||||||||||||||||||||| |||||||    
T  13553316 tatttgaacaaccatttggtacaacctatttgacaatctttctt 13553273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 250 - 287
Target Start/End: Complemental strand, 13553347 - 13553310
Alignment:
Q  250 aatgatatttgaacaatcatttggtacaacctatttga 287  Q
    |||||||||||||||| |||||||||||||||||||||    
T  13553347 aatgatatttgaacaaccatttggtacaacctatttga 13553310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 245 - 294
Target Start/End: Complemental strand, 40951373 - 40951324
Alignment:
Q  245 agagtaatgatatttgaacaatcatttggtacaacctatttgacaacctt 294  Q
    |||| |||||||| ||||||| |||| |||||||||||||||||||||||    
T  40951373 agagcaatgatatatgaacaaccattaggtacaacctatttgacaacctt 40951324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 294
Target Start/End: Original strand, 5167635 - 5167679
Alignment:
Q  250 aatgatatttgaacaatcatttggtacaacctatttgacaacctt 294  Q
    |||||||||||||||| ||||||||| |||||| |||||||||||    
T  5167635 aatgatatttgaacaaccatttggtataacctacttgacaacctt 5167679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 290
Target Start/End: Complemental strand, 10288338 - 10288290
Alignment:
Q  242 tatagagtaatgatatttgaacaatcatttggtacaacctatttgacaa 290  Q
    |||||||||| |||||||||| ||| ||||||||||| |||||||||||    
T  10288338 tatagagtaaagatatttgaataattatttggtacaatctatttgacaa 10288290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 294
Target Start/End: Original strand, 19668080 - 19668124
Alignment:
Q  250 aatgatatttgaacaatcatttggtacaacctatttgacaacctt 294  Q
    |||||||||||||||| |||||| |||||||||||||| ||||||    
T  19668080 aatgatatttgaacaaccatttgatacaacctatttgataacctt 19668124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 291
Target Start/End: Original strand, 305861 - 305902
Alignment:
Q  250 aatgatatttgaacaatcatttggtacaacctatttgacaac 291  Q
    ||||||||||||||||||||||||||||| || | |||||||    
T  305861 aatgatatttgaacaatcatttggtacaatctttatgacaac 305902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 290
Target Start/End: Complemental strand, 19637410 - 19637365
Alignment:
Q  245 agagtaatgatatttgaacaatcatttggtacaacctatttgacaa 290  Q
    |||| |||||||||||||||| ||||||||||||||| | ||||||    
T  19637410 agagcaatgatatttgaacaaccatttggtacaacctttatgacaa 19637365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 290
Target Start/End: Complemental strand, 19836003 - 19835958
Alignment:
Q  245 agagtaatgatatttgaacaatcatttggtacaacctatttgacaa 290  Q
    |||| |||||||||||||||| ||||||||||||||| | ||||||    
T  19836003 agagcaatgatatttgaacaaccatttggtacaacctttatgacaa 19835958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 294
Target Start/End: Original strand, 21805674 - 21805723
Alignment:
Q  245 agagtaatgatatttgaacaatcatttggtacaacctatttgacaacctt 294  Q
    |||| |||||||||| ||||| |||||||||||| || ||||||||||||    
T  21805674 agagcaatgatattttaacaaccatttggtacaatctttttgacaacctt 21805723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 290
Target Start/End: Original strand, 43650435 - 43650480
Alignment:
Q  245 agagtaatgatatttgaacaatcatttggtacaacctatttgacaa 290  Q
    ||||||||||||||| |||||||||||| |||||| ||| ||||||    
T  43650435 agagtaatgatatttaaacaatcatttgatacaacttatgtgacaa 43650480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 294
Target Start/End: Original strand, 4842412 - 4842456
Alignment:
Q  250 aatgatatttgaacaatcatttggtacaacctatttgacaacctt 294  Q
    |||||||| ||||| | |||||| |||||||||||||||||||||    
T  4842412 aatgatatatgaactaccatttgatacaacctatttgacaacctt 4842456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 290
Target Start/End: Complemental strand, 11126641 - 11126601
Alignment:
Q  250 aatgatatttgaacaatcatttggtacaacctatttgacaa 290  Q
    ||||||||||||||||||||||||| |||||| | ||||||    
T  11126641 aatgatatttgaacaatcatttggttcaacctttatgacaa 11126601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 294
Target Start/End: Complemental strand, 30856985 - 30856941
Alignment:
Q  250 aatgatatttgaacaatcatttggtacaacctatttgacaacctt 294  Q
    |||||||| ||||||| ||||||||||||  ||||||||||||||    
T  30856985 aatgatatatgaacaaccatttggtacaatttatttgacaacctt 30856941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 245 - 298
Target Start/End: Complemental strand, 11997833 - 11997780
Alignment:
Q  245 agagtaatgatatttgaacaatcatttggtacaacctatttgacaacctttctt 298  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  11997833 agagtaatgatatttgaacaaccatttggtacaacctatttgacatcctttctt 11997780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 245 - 294
Target Start/End: Complemental strand, 46567112 - 46567063
Alignment:
Q  245 agagtaatgatatttgaacaatcatttggtacaacctatttgacaacctt 294  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  46567112 agagcaatgatatttgaacaaccatttggtacaacctatttgacaacctt 46567063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 294
Target Start/End: Complemental strand, 54801181 - 54801131
Alignment:
Q  244 tagagtaatgatatttgaacaatcatttggtacaacctatttgacaacctt 294  Q
    ||||| ||||||||||||||||| |||||||||||  ||||||||||||||    
T  54801181 tagagcaatgatatttgaacaattatttggtacaatttatttgacaacctt 54801131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 245 - 294
Target Start/End: Complemental strand, 12639007 - 12638958
Alignment:
Q  245 agagtaatgatatttgaacaatcatttggtacaacctatttgacaacctt 294  Q
    |||| ||||||||||||||||  ||||| |||||||||||||||||||||    
T  12639007 agagaaatgatatttgaacaactatttgttacaacctatttgacaacctt 12638958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 250 - 295
Target Start/End: Complemental strand, 26440841 - 26440796
Alignment:
Q  250 aatgatatttgaacaatcatttggtacaacctatttgacaaccttt 295  Q
    ||||||||||||| |||||||| |||||| ||||||||||||||||    
T  26440841 aatgatatttgaagaatcattttgtacaatctatttgacaaccttt 26440796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 294
Target Start/End: Original strand, 16508870 - 16508914
Alignment:
Q  250 aatgatatttgaacaatcatttggtacaacctatttgacaacctt 294  Q
    |||| |||||||||||| ||||||||||||||| |||||||||||    
T  16508870 aatgctatttgaacaataatttggtacaacctacttgacaacctt 16508914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 290
Target Start/End: Complemental strand, 37977301 - 37977253
Alignment:
Q  242 tatagagtaatgatatttgaacaatcatttggtacaacctatttgacaa 290  Q
    ||||||| |||||||||||||||| ||||||||||||| | ||||||||    
T  37977301 tatagagcaatgatatttgaacaaccatttggtacaacatttttgacaa 37977253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 294
Target Start/End: Original strand, 28676037 - 28676091
Alignment:
Q  240 tatatagagtaatgatatttgaacaatcatttggtacaacctatttgacaacctt 294  Q
    ||||| ||| |||||||||| ||||| ||||| ||||||||| ||||||||||||    
T  28676037 tatattgagcaatgatatttaaacaaccattttgtacaacctttttgacaacctt 28676091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 287
Target Start/End: Complemental strand, 55511042 - 55511000
Alignment:
Q  245 agagtaatgatatttgaacaatcatttggtacaacctatttga 287  Q
    |||| |||||||||||||||| ||||||||||||| |||||||    
T  55511042 agagcaatgatatttgaacaaccatttggtacaacttatttga 55511000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 287
Target Start/End: Original strand, 23836993 - 23837030
Alignment:
Q  250 aatgatatttgaacaatcatttggtacaacctatttga 287  Q
    |||||||||| ||||||||||||||||||| |||||||    
T  23836993 aatgatatttaaacaatcatttggtacaacttatttga 23837030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 282
Target Start/End: Complemental strand, 32621795 - 32621763
Alignment:
Q  250 aatgatatttgaacaatcatttggtacaaccta 282  Q
    |||||||||||||||| ||||||||||||||||    
T  32621795 aatgatatttgaacaaccatttggtacaaccta 32621763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 294
Target Start/End: Complemental strand, 40847545 - 40847501
Alignment:
Q  250 aatgatatttgaacaatcatttggtacaacctatttgacaacctt 294  Q
    |||||||||||||||| ||||||  ||||||| ||||||||||||    
T  40847545 aatgatatttgaacaaccatttgacacaacctttttgacaacctt 40847501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 250 - 298
Target Start/End: Original strand, 462294 - 462342
Alignment:
Q  250 aatgatatttgaacaatcatttggtacaacctatttgacaacctttctt 298  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  462294 aatgatatttgaacaaccatttggtacaacctatttgacaacctttctt 462342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 244 - 291
Target Start/End: Complemental strand, 32796020 - 32795973
Alignment:
Q  244 tagagtaatgatatttgaacaatcatttggtacaacctatttgacaac 291  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||||    
T  32796020 tagagcaatgatatttgaacaaccatttggtacaacctatttgacaac 32795973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 244 - 294
Target Start/End: Original strand, 1901813 - 1901863
Alignment:
Q  244 tagagtaatgatatttgaacaatcatttggtacaacctatttgacaacctt 294  Q
    ||||| ||| |||||||||||| ||||||||||||||||||||||||||||    
T  1901813 tagagcaataatatttgaacaaccatttggtacaacctatttgacaacctt 1901863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 244 - 294
Target Start/End: Original strand, 1911259 - 1911309
Alignment:
Q  244 tagagtaatgatatttgaacaatcatttggtacaacctatttgacaacctt 294  Q
    ||||| ||| |||||||||||| ||||||||||||||||||||||||||||    
T  1911259 tagagcaataatatttgaacaaccatttggtacaacctatttgacaacctt 1911309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 245 - 294
Target Start/End: Original strand, 7867597 - 7867646
Alignment:
Q  245 agagtaatgatatttgaacaatcatttggtacaacctatttgacaacctt 294  Q
    |||| |||||||||||||||| |||||||||||| |||||||||||||||    
T  7867597 agagcaatgatatttgaacaaccatttggtacaatctatttgacaacctt 7867646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 291
Target Start/End: Original strand, 25959430 - 25959476
Alignment:
Q  245 agagtaatgatatttgaacaatcatttggtacaacctatttgacaac 291  Q
    |||| |||||||||||||||| |||||| ||||||||||||||||||    
T  25959430 agagcaatgatatttgaacaaccatttgatacaacctatttgacaac 25959476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 290
Target Start/End: Complemental strand, 31326892 - 31326846
Alignment:
Q  244 tagagtaatgatatttgaacaatcatttggtacaacctatttgacaa 290  Q
    ||||| |||||||||||||||| |||||||||||| |||||||||||    
T  31326892 tagagcaatgatatttgaacaaccatttggtacaatctatttgacaa 31326846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 254 - 295
Target Start/End: Original strand, 16267804 - 16267845
Alignment:
Q  254 atatttgaacaatcatttggtacaacctatttgacaaccttt 295  Q
    |||||||||||||||||||||||||| | |||||||||||||    
T  16267804 atatttgaacaatcatttggtacaacatttttgacaaccttt 16267845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 250 - 287
Target Start/End: Original strand, 29800442 - 29800479
Alignment:
Q  250 aatgatatttgaacaatcatttggtacaacctatttga 287  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  29800442 aatgatatttgaacaattatttggtacaacctatttga 29800479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 245 - 294
Target Start/End: Complemental strand, 44593149 - 44593100
Alignment:
Q  245 agagtaatgatatttgaacaatcatttggtacaacctatttgacaacctt 294  Q
    |||| ||||||||||||| |||||||||||||||| | ||||||||||||    
T  44593149 agagcaatgatatttgaataatcatttggtacaacttttttgacaacctt 44593100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 294
Target Start/End: Complemental strand, 981648 - 981604
Alignment:
Q  250 aatgatatttgaacaatcatttggtacaacctatttgacaacctt 294  Q
    |||||||||||||||| ||||| ||||| ||||||||||||||||    
T  981648 aatgatatttgaacaaccatttagtacagcctatttgacaacctt 981604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 294
Target Start/End: Original strand, 34607806 - 34607856
Alignment:
Q  244 tagagtaatgatatttgaacaatcatttggtacaacctatttgacaacctt 294  Q
    ||||| || |||||||||||||  ||||||||||| |||||||||||||||    
T  34607806 tagagcaacgatatttgaacaactatttggtacaatctatttgacaacctt 34607856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 291
Target Start/End: Original strand, 50294012 - 50294058
Alignment:
Q  245 agagtaatgatatttgaacaatcatttggtacaacctatttgacaac 291  Q
    |||| |||||||||| ||||| ||||||||||||| |||||||||||    
T  50294012 agagcaatgatattttaacaaccatttggtacaacttatttgacaac 50294058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 294
Target Start/End: Original strand, 32981009 - 32981058
Alignment:
Q  245 agagtaatgatatttgaacaatcatttggtacaacctatttgacaacctt 294  Q
    |||| |||||||||||||||| ||||||||||||  | ||||||||||||    
T  32981009 agagcaatgatatttgaacaaccatttggtacaaattttttgacaacctt 32981058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 281
Target Start/End: Original strand, 47773866 - 47773902
Alignment:
Q  245 agagtaatgatatttgaacaatcatttggtacaacct 281  Q
    |||||||| |||||||||||| |||||||||||||||    
T  47773866 agagtaatcatatttgaacaaccatttggtacaacct 47773902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 240 - 298
Target Start/End: Complemental strand, 91403 - 91345
Alignment:
Q  240 tatatagagtaatgatatttgaacaatcatttggtacaacctatttgacaacctttctt 298  Q
    |||| |||| |||||||||||||||| |||||| |||||||||||||||||||||||||    
T  91403 tataaagagcaatgatatttgaacaaccatttgatacaacctatttgacaacctttctt 91345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 245 - 294
Target Start/End: Complemental strand, 24792635 - 24792586
Alignment:
Q  245 agagtaatgatatttgaacaatcatttggtacaacctatttgacaacctt 294  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  24792635 agagcaatgatatttgaacaaccatttggtacaacctatttgacaacctt 24792586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 250 - 294
Target Start/End: Original strand, 9636051 - 9636095
Alignment:
Q  250 aatgatatttgaacaatcatttggtacaacctatttgacaacctt 294  Q
    |||||||||||||||| ||||||||||||||||||||||||||||    
T  9636051 aatgatatttgaacaaccatttggtacaacctatttgacaacctt 9636095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 243 - 294
Target Start/End: Complemental strand, 15639570 - 15639519
Alignment:
Q  243 atagagtaatgatatttgaacaatcatttggtacaacctatttgacaacctt 294  Q
    |||||| |||||||||||||||| ||||||||||||||| ||||||||||||    
T  15639570 atagagcaatgatatttgaacaaccatttggtacaacctttttgacaacctt 15639519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 243 - 294
Target Start/End: Original strand, 36581353 - 36581404
Alignment:
Q  243 atagagtaatgatatttgaacaatcatttggtacaacctatttgacaacctt 294  Q
    |||||| |||||||||||||||| ||||| ||||||||||||||||||||||    
T  36581353 atagagcaatgatatttgaacaaccattttgtacaacctatttgacaacctt 36581404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 294
Target Start/End: Original strand, 582762 - 582806
Alignment:
Q  250 aatgatatttgaacaatcatttggtacaacctatttgacaacctt 294  Q
    |||||||||||||||||||||||||||||  | ||||||||||||    
T  582762 aatgatatttgaacaatcatttggtacaagatttttgacaacctt 582806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 243 - 290
Target Start/End: Complemental strand, 38387895 - 38387848
Alignment:
Q  243 atagagtaatgatatttgaacaatcatttggtacaacctatttgacaa 290  Q
    |||||| |||||||||||||||| ||||||||||||||| | ||||||    
T  38387895 atagagcaatgatatttgaacaaccatttggtacaacctttatgacaa 38387848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 294
Target Start/End: Complemental strand, 7144753 - 7144709
Alignment:
Q  250 aatgatatttgaacaatcatttggtacaacctatttgacaacctt 294  Q
    |||||||||||| ||| |||||| |||||||| ||||||||||||    
T  7144753 aatgatatttgagcaaccatttgatacaacctttttgacaacctt 7144709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 281
Target Start/End: Complemental strand, 20040957 - 20040921
Alignment:
Q  245 agagtaatgatatttgaacaatcatttggtacaacct 281  Q
    |||| |||||||||||||||| |||||||||||||||    
T  20040957 agagcaatgatatttgaacaaccatttggtacaacct 20040921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 294
Target Start/End: Complemental strand, 28904179 - 28904126
Alignment:
Q  245 agagtaatgatatttgaacaatca----tttggtacaacctatttgacaacctt 294  Q
    |||| |||||||||||||||| ||    ||||||||||||||||||||||||||    
T  28904179 agagcaatgatatttgaacaaccaattatttggtacaacctatttgacaacctt 28904126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 294
Target Start/End: Complemental strand, 28940574 - 28940521
Alignment:
Q  245 agagtaatgatatttgaacaatca----tttggtacaacctatttgacaacctt 294  Q
    |||| |||||||||||||||| ||    ||||||||||||||||||||||||||    
T  28940574 agagcaatgatatttgaacaaccaattatttggtacaacctatttgacaacctt 28940521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 290
Target Start/End: Complemental strand, 36624500 - 36624456
Alignment:
Q  246 gagtaatgatatttgaacaatcatttggtacaacctatttgacaa 290  Q
    |||||||||||||||||||| |||||| |||||  ||||||||||    
T  36624500 gagtaatgatatttgaacaagcatttgatacaatttatttgacaa 36624456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 245 - 294
Target Start/End: Complemental strand, 35018 - 34969
Alignment:
Q  245 agagtaatgatatttgaacaatcatttggtacaacctatttgacaacctt 294  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  35018 agagcaatgatatttgaacaaccatttggtacaacctatttgacaacctt 34969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 245 - 294
Target Start/End: Complemental strand, 2469875 - 2469826
Alignment:
Q  245 agagtaatgatatttgaacaatcatttggtacaacctatttgacaacctt 294  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  2469875 agagcaatgatatttgaacaaccatttggtacaacctatttgacaacctt 2469826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 243 - 294
Target Start/End: Complemental strand, 9031392 - 9031341
Alignment:
Q  243 atagagtaatgatatttgaacaatcatttggtacaacctatttgacaacctt 294  Q
    |||||| |||||||||||||||| |||||||||||| |||||||||||||||    
T  9031392 atagagcaatgatatttgaacaaccatttggtacaatctatttgacaacctt 9031341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 245 - 298
Target Start/End: Original strand, 43079517 - 43079570
Alignment:
Q  245 agagtaatgatatttgaacaatcatttggtacaacctatttgacaacctttctt 298  Q
    |||| |||||||||||||||| ||||||||| ||| ||||||||||||||||||    
T  43079517 agagcaatgatatttgaacaaccatttggtaaaacttatttgacaacctttctt 43079570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 250 - 294
Target Start/End: Original strand, 18157078 - 18157122
Alignment:
Q  250 aatgatatttgaacaatcatttggtacaacctatttgacaacctt 294  Q
    ||||||||||||||||  |||||||||||||||||||||||||||    
T  18157078 aatgatatttgaacaactatttggtacaacctatttgacaacctt 18157122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 250 - 294
Target Start/End: Complemental strand, 43107790 - 43107746
Alignment:
Q  250 aatgatatttgaacaatcatttggtacaacctatttgacaacctt 294  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||    
T  43107790 aatgatatttgaacaaccatttggtacaacctatttaacaacctt 43107746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 245 - 294
Target Start/End: Original strand, 25940555 - 25940604
Alignment:
Q  245 agagtaatgatatttgaacaatcatttggtacaacctatttgacaacctt 294  Q
    |||| ||||||||||||||||  ||||||||||| |||||||||||||||    
T  25940555 agagcaatgatatttgaacaactatttggtacaatctatttgacaacctt 25940604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 294
Target Start/End: Complemental strand, 27688815 - 27688771
Alignment:
Q  250 aatgatatttgaacaatcatttggtacaacctatttgacaacctt 294  Q
    ||||||||||| ||||| ||||||||||| |||||||||||||||    
T  27688815 aatgatatttgtacaattatttggtacaatctatttgacaacctt 27688771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 294
Target Start/End: Complemental strand, 30941351 - 30941311
Alignment:
Q  254 atatttgaacaatcatttggtacaacctatttgacaacctt 294  Q
    |||||||||||| ||||| ||||||||||||||||||||||    
T  30941351 atatttgaacaaccatttagtacaacctatttgacaacctt 30941311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 294
Target Start/End: Complemental strand, 43444798 - 43444762
Alignment:
Q  258 ttgaacaatcatttggtacaacctatttgacaacctt 294  Q
    |||||||| ||||||||||||||||||||||||||||    
T  43444798 ttgaacaaccatttggtacaacctatttgacaacctt 43444762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 290
Target Start/End: Original strand, 35072133 - 35072178
Alignment:
Q  245 agagtaatgatatttgaacaatcatttggtacaacctatttgacaa 290  Q
    |||| ||||||||||||||||  |||||||||||||| ||||||||    
T  35072133 agagcaatgatatttgaacaactatttggtacaacctttttgacaa 35072178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 271
Target Start/End: Complemental strand, 41878178 - 41878150
Alignment:
Q  243 atagagtaatgatatttgaacaatcattt 271  Q
    |||||||||||||||||||||||||||||    
T  41878178 atagagtaatgatatttgaacaatcattt 41878150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 245 - 298
Target Start/End: Complemental strand, 27352813 - 27352760
Alignment:
Q  245 agagtaatgatatttgaacaatcatttggtacaacctatttgacaacctttctt 298  Q
    |||| |||||||||||||||| |||||||||||||||||| |||||||||||||    
T  27352813 agagcaatgatatttgaacaaccatttggtacaacctattcgacaacctttctt 27352760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 245 - 298
Target Start/End: Original strand, 51172195 - 51172248
Alignment:
Q  245 agagtaatgatatttgaacaatcatttggtacaacctatttgacaacctttctt 298  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  51172195 agagcaatgatatttgaacaatcatttggtacaatctatttgacaatctttctt 51172248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 244 - 294
Target Start/End: Complemental strand, 44730828 - 44730778
Alignment:
Q  244 tagagtaatgatatttgaacaatcatttggtacaacctatttgacaacctt 294  Q
    ||||| |||||||||||||||| ||||||||||||||| ||||||||||||    
T  44730828 tagagcaatgatatttgaacaaccatttggtacaacctttttgacaacctt 44730778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 245 - 294
Target Start/End: Complemental strand, 48872562 - 48872513
Alignment:
Q  245 agagtaatgatatttgaacaatcatttggtacaacctatttgacaacctt 294  Q
    |||| |||||||||||||||| |||||| |||||||||||||||||||||    
T  48872562 agagcaatgatatttgaacaaccatttgatacaacctatttgacaacctt 48872513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 250 - 294
Target Start/End: Original strand, 51339593 - 51339637
Alignment:
Q  250 aatgatatttgaacaatcatttggtacaacctatttgacaacctt 294  Q
    ||||||||||||||||  |||||||||||||||||||||||||||    
T  51339593 aatgatatttgaacaactatttggtacaacctatttgacaacctt 51339637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 247 - 290
Target Start/End: Complemental strand, 5043229 - 5043186
Alignment:
Q  247 agtaatgatatttgaacaatcatttggtacaacctatttgacaa 290  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||    
T  5043229 agtaatgatatttgaacaaccatttggtacaacttatttgacaa 5043186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 294
Target Start/End: Complemental strand, 25061917 - 25061867
Alignment:
Q  244 tagagtaatgatatttgaacaatcatttggtacaacctatttgacaacctt 294  Q
    ||||| |||||||||||||||| |||||| ||||| |||||||||||||||    
T  25061917 tagagcaatgatatttgaacaaccatttgatacaatctatttgacaacctt 25061867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 254 - 291
Target Start/End: Original strand, 30530471 - 30530508
Alignment:
Q  254 atatttgaacaatcatttggtacaacctatttgacaac 291  Q
    |||||||||||| |||||||||||||||||||||||||    
T  30530471 atatttgaacaaccatttggtacaacctatttgacaac 30530508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 245 - 294
Target Start/End: Original strand, 36930644 - 36930693
Alignment:
Q  245 agagtaatgatatttgaacaatcatttggtacaacctatttgacaacctt 294  Q
    |||| |||||||||||||||| ||||| ||||||||| ||||||||||||    
T  36930644 agagcaatgatatttgaacaaccattttgtacaacctttttgacaacctt 36930693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 245 - 290
Target Start/End: Complemental strand, 49621544 - 49621499
Alignment:
Q  245 agagtaatgatatttgaacaatcatttggtacaacctatttgacaa 290  Q
    |||| |||||||||||||||| |||||||||||| |||||||||||    
T  49621544 agagcaatgatatttgaacaaccatttggtacaatctatttgacaa 49621499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 294
Target Start/End: Complemental strand, 4604707 - 4604663
Alignment:
Q  250 aatgatatttgaacaatcatttggtacaacctatttgacaacctt 294  Q
    ||||||||||||||||  |||||||||||||| ||||||||||||    
T  4604707 aatgatatttgaacaacgatttggtacaacctgtttgacaacctt 4604663  T

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Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 290
Target Start/End: Original strand, 40595941 - 40595987
Alignment:
Q  244 tagagtaatgatatttgaacaatcatttggtacaacctatttgacaa 290  Q
    ||||| |||||||||||||||| |||||| |||||||| ||||||||    
T  40595941 tagagcaatgatatttgaacaaccatttgatacaacctttttgacaa 40595987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 294
Target Start/End: Complemental strand, 30687235 - 30687186
Alignment:
Q  245 agagtaatgatatttgaacaatcatttggtacaacctatttgacaacctt 294  Q
    |||| |||||||||||||||| ||||||||||||  | ||||||||||||    
T  30687235 agagcaatgatatttgaacaaccatttggtacaaattttttgacaacctt 30687186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 287
Target Start/End: Original strand, 43611975 - 43612012
Alignment:
Q  250 aatgatatttgaacaatcatttggtacaacctatttga 287  Q
    |||||||||||| ||| |||||||||||||||||||||    
T  43611975 aatgatatttgaccaaccatttggtacaacctatttga 43612012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 294
Target Start/End: Original strand, 50527945 - 50527994
Alignment:
Q  245 agagtaatgatatttgaacaatcatttggtacaacctatttgacaacctt 294  Q
    |||| ||| |||||||||||| |||||| ||||| |||||||||||||||    
T  50527945 agagcaatcatatttgaacaaccatttgctacaatctatttgacaacctt 50527994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 294
Target Start/End: Complemental strand, 16658626 - 16658573
Alignment:
Q  245 agagtaatgatatttgaacaatca----tttggtacaacctatttgacaacctt 294  Q
    |||| |||||||||||||||| ||    ||||||||||||||||||||||||||    
T  16658626 agagcaatgatatttgaacaaccaattatttggtacaacctatttgacaacctt 16658573  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 250 - 298
Target Start/End: Original strand, 8173205 - 8173253
Alignment:
Q  250 aatgatatttgaacaatcatttggtacaacctatttgacaacctttctt 298  Q
    |||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  8173205 aatgatatttgaacaaccatttggtataacctatttgacaacctttctt 8173253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 291
Target Start/End: Complemental strand, 32730072 - 32730026
Alignment:
Q  245 agagtaatgatatttgaacaatcatttggtacaacctatttgacaac 291  Q
    |||| |||||||| ||||||| |||||||||||||||||||||||||    
T  32730072 agagcaatgatatatgaacaaccatttggtacaacctatttgacaac 32730026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 291
Target Start/End: Original strand, 16533147 - 16533194
Alignment:
Q  245 agagtaatgatatttgaacaatc-atttggtacaacctatttgacaac 291  Q
    |||| |||||||||||||||||| |||||||| |||||||||||||||    
T  16533147 agagcaatgatatttgaacaatcaatttggtataacctatttgacaac 16533194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 294
Target Start/End: Complemental strand, 21443871 - 21443822
Alignment:
Q  245 agagtaatgatatttgaacaatcatttggtacaacctatttgacaacctt 294  Q
    |||| ||||||||||||||||  ||||||||||| ||||| |||||||||    
T  21443871 agagcaatgatatttgaacaactatttggtacaatctattggacaacctt 21443822  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 290
Target Start/End: Original strand, 25567386 - 25567426
Alignment:
Q  250 aatgatatttgaacaatcatttggtacaacctatttgacaa 290  Q
    |||||||||||||||| ||||||||||||||| | ||||||    
T  25567386 aatgatatttgaacaaccatttggtacaacctttatgacaa 25567426  T

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Target: scaffold0002 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 245 - 298
Target Start/End: Complemental strand, 440901 - 440848
Alignment:
Q  245 agagtaatgatatttgaacaatcatttggtacaacctatttgacaacctttctt 298  Q
    |||| |||||||||||||||| |||||||||||| ||||||||||| |||||||    
T  440901 agagcaatgatatttgaacaaccatttggtacaatctatttgacaatctttctt 440848  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 250 - 291
Target Start/End: Complemental strand, 5782966 - 5782925
Alignment:
Q  250 aatgatatttgaacaatcatttggtacaacctatttgacaac 291  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  5782966 aatgatatttgaacaaccatttggtacaacctatttgacaac 5782925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 250 - 294
Target Start/End: Complemental strand, 1796661 - 1796617
Alignment:
Q  250 aatgatatttgaacaatcatttggtacaacctatttgacaacctt 294  Q
    |||||||||||||||| |||||| |||||||||||||||||||||    
T  1796661 aatgatatttgaacaaccatttgttacaacctatttgacaacctt 1796617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 245 - 294
Target Start/End: Original strand, 12045541 - 12045590
Alignment:
Q  245 agagtaatgatatttgaacaatcatttggtacaacctatttgacaacctt 294  Q
    |||| |||||||||||||||| ||||||||| ||||| ||||||||||||    
T  12045541 agagcaatgatatttgaacaaccatttggtataacctttttgacaacctt 12045590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 294
Target Start/End: Complemental strand, 36740490 - 36740446
Alignment:
Q  250 aatgatatttgaacaatcatttggtacaacctatttgacaacctt 294  Q
    |||||||||||||||| |||||| ||||| |||||||||||||||    
T  36740490 aatgatatttgaacaaccatttgatacaatctatttgacaacctt 36740446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 244 - 291
Target Start/End: Complemental strand, 6005128 - 6005081
Alignment:
Q  244 tagagtaatgatatttgaacaatcatttggtacaacctatttgacaac 291  Q
    ||||| |||||| ||||||||| ||||||||||||| |||||||||||    
T  6005128 tagagcaatgatgtttgaacaaccatttggtacaacttatttgacaac 6005081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 290
Target Start/End: Original strand, 69514 - 69559
Alignment:
Q  245 agagtaatgatatttgaacaatcatttggtacaacctatttgacaa 290  Q
    |||| |||| ||||||||||| |||||| |||||||||||||||||    
T  69514 agagcaatgctatttgaacaaccatttgatacaacctatttgacaa 69559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 278
Target Start/End: Complemental strand, 20853097 - 20853069
Alignment:
Q  250 aatgatatttgaacaatcatttggtacaa 278  Q
    |||||||||||||||||||||||||||||    
T  20853097 aatgatatttgaacaatcatttggtacaa 20853069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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