View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15784_low_1 (Length: 565)

Name: NF15784_low_1
Description: NF15784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15784_low_1
NF15784_low_1
[»] chr1 (13 HSPs)
chr1 (13-549)||(28239493-28240032)
chr1 (421-536)||(28232264-28232384)
chr1 (429-549)||(47569833-47569960)
chr1 (437-536)||(24621025-24621130)
chr1 (273-335)||(47569729-47569791)
chr1 (112-334)||(28231896-28232125)
chr1 (484-549)||(21158367-21158433)
chr1 (270-350)||(28326857-28326938)
chr1 (487-536)||(28327085-28327134)
chr1 (282-347)||(12541139-12541204)
chr1 (113-156)||(47569524-47569567)
chr1 (266-339)||(14508381-14508454)
chr1 (434-463)||(28327043-28327072)
[»] chr4 (1 HSPs)
chr4 (484-536)||(1637699-1637751)
[»] chr6 (1 HSPs)
chr6 (291-348)||(384136-384193)


Alignment Details
Target: chr1 (Bit Score: 423; Significance: 0; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 13 - 549
Target Start/End: Original strand, 28239493 - 28240032
Alignment:
Q  13 caaaggccaaggtggatcaaaaagcaaccttatgaataagattgnnnnnnnnnnnnnnnnnctgctactttccgtaccttacgagtttaacggtatttct 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||                 |||||||||||||||||||||||||||||||||||||||    
T  28239493 caaaggccaaggtggatcaaaaagcaaccttatgaataagattgaaaaaaaggtcaaaaaactgctactttccgtaccttacgagtttaacggtatttct 28239592  T
Q  113 tatgattgaactacaacaaactatttatagtgggattgtttggtaaaacatcgaaagacaagttggttgtgttccagttgatgatgatggtgaaacaata 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28239593 tatgattgaactacaacaaactatttatagtgggattgtttggtaaaacatcgaaagacaagttggttgtgttccagttgatgatgatggtgaaacaata 28239692  T
Q  213 a---agagnnnnnnnnnnnnatgtgtaagatatatggcaacaaggatggcacaaaagaacttgtttgtgcaatgtagattacatgctttctagtttgcta 309  Q
    |   ||||            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28239693 ataaagagtctctctctctcatgtgtaagatatatggcaacaaggatggcacaaaagaacttgtttgtgcaatgtagattacatgctttctagtttgcta 28239792  T
Q  310 atttaaggactttgtttttgcttttaattgcacttctattcattagctgattagtttcccagtgagtggacaataattgtgtttaatttatttttaataa 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  28239793 atttaaggactttgtttttgcttttaattgcacttctattcattagctgattagtctcccagtgagtggacaataattgtgtttaatttatttttaataa 28239892  T
Q  410 tgtcgggatgtgataggagatactcatgtttcttgttttatgctctttgattatataaatatgcctatgattgtttgtgacattttcttgaaagcctgaa 509  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  28239893 tgtctggatgtgataggagatactcatgtttcttgttttatgctctttgattatataaatatgcctatgattgtttgtgacattttcttgaaagtctgaa 28239992  T
Q  510 tcaattatagcattgtagtctgcaatgagctgatacattt 549  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  28239993 tcaattatagcattgtagtctgcaatgagcttatacattt 28240032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 421 - 536
Target Start/End: Original strand, 28232264 - 28232384
Alignment:
Q  421 gataggagatactcatgtttcttgttttatgctctttgattatataaatatgcctatgattgt------ttgtgacattttcttgaaagcctgaatcaat 514  Q
    |||||||| ||  ||||||||||||||||||||||||||||||||||||||||||||| ||||      ||||||||||||||||||||||||||||| |    
T  28232264 gataggaggtatccatgtttcttgttttatgctctttgattatataaatatgcctatg-ttgtctctccttgtgacattttcttgaaagcctgaatcagt 28232362  T
Q  515 tatagcattgtagtctgcaatg 536  Q
    ||||||||||||||||||||||    
T  28232363 tatagcattgtagtctgcaatg 28232384  T

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Target: chr1; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 429 - 549
Target Start/End: Original strand, 47569833 - 47569960
Alignment:
Q  429 atactcatgtttcttgttttatgctctttgattatataaatatgcctatgattgt------ttgtgacattttcttgaaagcctgaatcaattatagcat 522  Q
    |||| |||||||||| |||||||||||||||||||||||||| ||||||||||||      |||| ||||||||||||||||||||| || || ||||||    
T  47569833 atacgcatgtttcttattttatgctctttgattatataaatacgcctatgattgtcttggcttgttacattttcttgaaagcctgaaccatttttagcat 47569932  T
Q  523 tgtagtctgcaat-gagctgatacattt 549  Q
    |||||| |||||| ||| ||||||||||    
T  47569933 tgtagtttgcaatggagttgatacattt 47569960  T

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Target: chr1; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 437 - 536
Target Start/End: Complemental strand, 24621130 - 24621025
Alignment:
Q  437 gtttcttgttttatgctctttgattatataaatatgcctatgattgt------ttgtgacattttcttgaaagcctgaatcaattatagcattgtagtct 530  Q
    ||||||| |||||||||||||||||||| ||||| |||| |||||||      |||||||||||||||||||||||||||||||| ||||||| |||| |    
T  24621130 gtttcttattttatgctctttgattataaaaatacgcctttgattgtcttggcttgtgacattttcttgaaagcctgaatcaattttagcattctagttt 24621031  T
Q  531 gcaatg 536  Q
    ||||||    
T  24621030 gcaatg 24621025  T

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Target: chr1; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 273 - 335
Target Start/End: Original strand, 47569729 - 47569791
Alignment:
Q  273 tttgtgcaatgtagattacatgctttctagtttgctaatttaaggactttgtttttgctttta 335  Q
    |||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||    
T  47569729 tttgtggaatgtagattacatgctttctagttttctaatttaaggactatgtttttgctttta 47569791  T

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Target: chr1; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 112 - 334
Target Start/End: Original strand, 28231896 - 28232125
Alignment:
Q  112 ttatgattgaactacaa-caaactatttatagtgggattgtttggtaaaacatcgaaagacaagttggttgtgttccagttgatgatgatggtgaaacaa 210  Q
    |||||||||||| |||| ||||||||||| ||||||  |||||||| ||||||| ||||||||||||||||  ||| |||   |||||||| ||||||||    
T  28231896 ttatgattgaacaacaaacaaactatttaaagtgggcgtgtttggtgaaacatccaaagacaagttggttgcattctagt---tgatgatgctgaaacaa 28231992  T
Q  211 taaagag-----nnnnnnnnnnnnatgtgtaagatatatggcaacaaggatggcacaaaagaacttgtttgtgcaatgta----gattacatgctttcta 301  Q
    ||| |||                  ||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||     |||| ||||||||||    
T  28231993 taaggagtctctctctgtgtgtgtgtgtgtaagatatatggcaataaggatgtcacaaaagaacttgtttgtgaaatgtacattaattaaatgctttcta 28232092  T
Q  302 gtttgctaatttaaggactttgtttttgctttt 334  Q
    |||| ||| || || |||  |||||||||||||    
T  28232093 gttttctagttaaatgaccatgtttttgctttt 28232125  T

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Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 484 - 549
Target Start/End: Complemental strand, 21158433 - 21158367
Alignment:
Q  484 ttgtgacattttcttgaaagcctgaatcaattatagcattgtagtctgcaat-gagctgatacattt 549  Q
    |||||||||||||||||||||||||||||||||||||||||| || ||| || ||| ||||||||||    
T  21158433 ttgtgacattttcttgaaagcctgaatcaattatagcattgtcgtttgcgatggagttgatacattt 21158367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 270 - 350
Target Start/End: Original strand, 28326857 - 28326938
Alignment:
Q  270 ttgtttgtgcaatgtagattacatgctttct-agtttgctaatttaaggactttgtttttgcttttaattgcacttctattc 350  Q
    ||||||| | ||| ||||||||||||||| | |||||||||||| ||||||| || ||||||||||| ||||||||||||||    
T  28326857 ttgtttgcgaaatttagattacatgcttttttagtttgctaattaaaggactatgcttttgcttttagttgcacttctattc 28326938  T

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Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 487 - 536
Target Start/End: Original strand, 28327085 - 28327134
Alignment:
Q  487 tgacattttcttgaaagcctgaatcaattatagcattgtagtctgcaatg 536  Q
    ||||||||||||||||||||||||||||| ||||||||| || |||||||    
T  28327085 tgacattttcttgaaagcctgaatcaattctagcattgttgtttgcaatg 28327134  T

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Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 282 - 347
Target Start/End: Original strand, 12541139 - 12541204
Alignment:
Q  282 tgtagattacatgctttctagtttgctaatttaaggactttgtttttgcttttaattgcacttcta 347  Q
    ||||||||||||||||||||||||  ||||||||||||  || || |||||||| || ||||||||    
T  12541139 tgtagattacatgctttctagttttttaatttaaggaccatgcttctgcttttactttcacttcta 12541204  T

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Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 156
Target Start/End: Original strand, 47569524 - 47569567
Alignment:
Q  113 tatgattgaactacaacaaactatttatagtgggattgtttggt 156  Q
    ||||||||||| ||||||||||||||| |||||| |||||||||    
T  47569524 tatgattgaacaacaacaaactatttaaagtgggcttgtttggt 47569567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 339
Target Start/End: Complemental strand, 14508454 - 14508381
Alignment:
Q  266 gaacttgtttgtgcaatgtagattacatgctttctagtttgctaatttaaggactttgtttttgcttttaattg 339  Q
    ||||||||||||  |  |||| |||||||||||||| ||| |||||| ||||||| || |||||||||| ||||    
T  14508454 gaacttgtttgttgagagtagtttacatgctttctatttttctaattaaaggactatgcttttgcttttcattg 14508381  T

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Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 434 - 463
Target Start/End: Original strand, 28327043 - 28327072
Alignment:
Q  434 catgtttcttgttttatgctctttgattat 463  Q
    ||||||||||||||||||||||||||||||    
T  28327043 catgtttcttgttttatgctctttgattat 28327072  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 484 - 536
Target Start/End: Original strand, 1637699 - 1637751
Alignment:
Q  484 ttgtgacattttcttgaaagcctgaatcaattatagcattgtagtctgcaatg 536  Q
    |||||||||||||||||||||||||||||||||||  ||||| || |||||||    
T  1637699 ttgtgacattttcttgaaagcctgaatcaattatataattgttgtttgcaatg 1637751  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 348
Target Start/End: Complemental strand, 384193 - 384136
Alignment:
Q  291 catgctttctagtttgctaatttaaggactttgtttttgcttttaattgcacttctat 348  Q
    ||||||||||||||| |||||||| | ||| || || |||||||| ||||||||||||    
T  384193 catgctttctagttttctaatttatgcactatgcttctgcttttagttgcacttctat 384136  T

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