View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15784_low_11 (Length: 239)
Name: NF15784_low_11
Description: NF15784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15784_low_11 |
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| [»] scaffold0129 (3 HSPs) |
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Alignment Details
Target: scaffold0129 (Bit Score: 173; Significance: 4e-93; HSPs: 3)
Name: scaffold0129
Description:
Target: scaffold0129; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 47 - 239
Target Start/End: Complemental strand, 36323 - 36131
Alignment:
| Q |
47 |
gtgtttatccagtctctcttattcaggaaccaggaaatcaacataaacctgtagaatagcatcaaaggattttgcattaagtgaaaccaaatgtgttaga |
146 |
Q |
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| T |
36323 |
gtgtttatccagtttctcttattcagaaaccaggaaatcaacataaacctatagaatagcatcaaaggattttgcattaagtgaaaccaaatgtgttaga |
36224 |
T |
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| Q |
147 |
aaacaagaacagcatcaagagtcgagaagcatttttatacataaattcgaaagtgattacgacgacatcacaactgaaactaagtttagtccc |
239 |
Q |
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| T |
36223 |
aaacaagaacaacatcaagagtcgagaagcatttttatacataaattcgaaagtgattacgacgacatcacaactgaaacaaagtttagtccc |
36131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0129; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 44 - 239
Target Start/End: Complemental strand, 28066 - 27874
Alignment:
| Q |
44 |
gaagtgtttatccagtctctcttattcaggaaccaggaaatcaacataaacctgtagaatagcatcaaaggattttgcattaagtgaaaccaaatgtgtt |
143 |
Q |
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| T |
28066 |
gaagtgtttatctagtctctcttattcaggaaccaggaaatcaatataaacctatcgaatagcatcaaaggattttgcattaagtgaaaccaagtgtgtt |
27967 |
T |
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| Q |
144 |
agaaaacaagaacagcatcaagagtcgagaagcatttttatacataaattcgaaagtgattacgacgacatcacaactgaaactaagtttagtccc |
239 |
Q |
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| T |
27966 |
agaaaacaagaatatcatcaagagtcgagaagtatttttatacataaattcgaacatgatt---gcgacatcacaactgaaacaaagtttagtccc |
27874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0129; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 62 - 238
Target Start/End: Complemental strand, 26288 - 26120
Alignment:
| Q |
62 |
ctcttattcaggaaccaggaaatcaacataaacctgtagaatagcatcaaaggattttgcattaagtgaaaccaaatgtgttagaaaacaagaacagcat |
161 |
Q |
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| T |
26288 |
ctcttgttccggaaccagaaaatcaatataaacctattgaatagcatgaaaggattttgcattaa-----accaaatgtgttacaaaacatgaatagcat |
26194 |
T |
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| Q |
162 |
caagagtcgagaagcatttttatacataaattcgaaagtgattacgacgacatcacaactgaaactaagtttagtcc |
238 |
Q |
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| T |
26193 |
caagagtcgagaagcagttttatacataaattcgaaaatgatt---accacatcacaacttaaacaaattttagtcc |
26120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 44 - 192
Target Start/End: Complemental strand, 32304674 - 32304528
Alignment:
| Q |
44 |
gaagtgtttatccagtctctcttattcaggaaccaggaaatcaacataaacctgtagaatagcatcaaaggattttgcattaagtgaaaccaaatgtgtt |
143 |
Q |
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| T |
32304674 |
gaagtgtttatccagtccatcttgtttcggaaccagaaaatcaatatacacctatcgaatagcatcaaaggaatttgcattaagtgaaaccgaaattgtt |
32304575 |
T |
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| Q |
144 |
agaaaacaagaacagcatcaagagtcgagaagcatttttatacataaat |
192 |
Q |
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| T |
32304574 |
agaaaactataatagcatcaagagtc-agaagcattttt-tacataaat |
32304528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 43 - 170
Target Start/End: Original strand, 35428425 - 35428553
Alignment:
| Q |
43 |
ggaagtgtttatccagtctctcttattcaggaaccaggaaatcaacataaacctgtaga-atagcatcaaaggattttgcattaagtgaaaccaaatgtg |
141 |
Q |
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| T |
35428425 |
ggaagtgtttatccagtccctcttgttccggaaccaagaaatcaatataaacctatatatcgagcatcaaaggattttacaataaaagataccgaatgtg |
35428524 |
T |
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| Q |
142 |
ttagaaaacaagaacagcatcaagagtcg |
170 |
Q |
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| T |
35428525 |
ttagaaaagtggaatagcatcaagagtcg |
35428553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 113 - 167
Target Start/End: Original strand, 35427241 - 35427295
Alignment:
| Q |
113 |
ggattttgcattaagtgaaaccaaatgtgttagaaaacaagaacagcatcaagag |
167 |
Q |
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| T |
35427241 |
ggattttgcattaagtgaaaccgaatttgttagaaaactggaacaacatcaagag |
35427295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 185
Target Start/End: Complemental strand, 25421291 - 25421211
Alignment:
| Q |
104 |
agcatcaaaggattttgcattaagtgaaaccaaatgtgttagaaaacaagaacagcatcaagagtcgagaagcatttttata |
185 |
Q |
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| T |
25421291 |
agcatcaaaggattctgcctgaagtgaaatcgaatttattagaaaactggaatagcatcaagaatc-agaagcatttttata |
25421211 |
T |
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