View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15784_low_12 (Length: 214)
Name: NF15784_low_12
Description: NF15784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15784_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 20 - 199
Target Start/End: Complemental strand, 6601657 - 6601478
Alignment:
| Q |
20 |
gaacctgcaacaagaagacaagtgattattttctcttatcattttcaataagaaaaagcaaatgaaaacaacaaaattaacatatatctataaactaagc |
119 |
Q |
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| T |
6601657 |
gaacctgcaacaagaagacaagtgattattttctcttatcattttcaataagaaaaagcaaatgaaaacaacaaaattaacatatatctataaactaagc |
6601558 |
T |
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| Q |
120 |
tgacaacattttcaactacttttcatgaactgaaatctttatttccacataaaagaacaaaatctgaaagaatccctatg |
199 |
Q |
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| T |
6601557 |
tgacaacattttcaactacttttcatgaactgaaatctttatttccacataaaagaacaaaatctgaaagaatccctatg |
6601478 |
T |
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Target: chr2 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 20 - 199
Target Start/End: Original strand, 3701886 - 3702065
Alignment:
| Q |
20 |
gaacctgcaacaagaagacaagtgattattttctcttatcattttcaataagaaaaagcaaatgaaaacaacaaaattaacatatatctataaactaagc |
119 |
Q |
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||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
3701886 |
gaacctgcaacaagaagacaagtgagtattttctctaatcattttcaataagaaaaagcaaatgaaaacaacaaaattaacatatatccataaactaagc |
3701985 |
T |
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| Q |
120 |
tgacaacattttcaactacttttcatgaactgaaatctttatttccacataaaagaacaaaatctgaaagaatccctatg |
199 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |
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| T |
3701986 |
tgacaacattttgaactacttttcatgaactgaaatctttatttccacataaaagaaaaaaatctgaaagaatctctatg |
3702065 |
T |
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