View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15784_low_2 (Length: 526)
Name: NF15784_low_2
Description: NF15784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15784_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 367; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 13 - 510
Target Start/End: Original strand, 6932888 - 6933400
Alignment:
| Q |
13 |
ttctggaagagggaaattttcagcagctgatcggtgtcatatgtcgagccgctatttgcctaccaaaggtccttggattgtcgatcgaatgggaagtcgt |
112 |
Q |
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| T |
6932888 |
ttctggaagagggaaattttcagcagctgatcggtgtcatatgtcgagccgctatttgcctaccaaaggtccttggattgtcgatcggatgggaagtcgt |
6932987 |
T |
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| Q |
113 |
gcttatgtttcgcagttttcagatgatggttctcttttcattgctggatttcaggttatctctaccaccattctgattgtagttacttatgtataattat |
212 |
Q |
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| T |
6932988 |
gcttatgtttcgcagttttcagatgatggttctctttttatagctggatttcaggttatttccgccaccattctgatcgtaattatttatgtataattat |
6933087 |
T |
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| Q |
213 |
gtctgaagtgaagctgaaatatgaagcactgacatagacacttggcacaacactgacacgtcgacactgatagtattttgaaaaatggaagaaattggaa |
312 |
Q |
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| T |
6933088 |
gtctgaattgaagctgaaacatgaaccaccgacatatacactggtcacaacactgacacatcgacaccgatagtattttgaaaaatggaagaaattgaaa |
6933187 |
T |
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| Q |
313 |
gtaactacatgtgttggtgttgtgttggac---------------atcggaagtgtcggtgtttcatatgaagatgattttgttaaaagaaacagtcttg |
397 |
Q |
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| T |
6933188 |
gtaactatatgtgttggtattgtgttggacaccagacacaccttaatcggaagtgtcggtgttgcatatgaagatgattttgttaaaagaaacagtcttg |
6933287 |
T |
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| Q |
398 |
tatttctgaaactataattatgggacaaaagggtctttaaatccttacttgtggttttttcttttgacaaaaaatccttacttgtggttgtttgtgcttt |
497 |
Q |
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| T |
6933288 |
tatttctgaaactataattatgggacgaaagggtctttaaatccttgcttgtggttttttcttttgacaaaaaatccttacttgtggttgtttgtgcttt |
6933387 |
T |
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| Q |
498 |
gttatgaaacagg |
510 |
Q |
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| T |
6933388 |
gttatgaaacagg |
6933400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 266 - 302
Target Start/End: Original strand, 41032638 - 41032674
Alignment:
| Q |
266 |
tgacacgtcgacactgatagtattttgaaaaatggaa |
302 |
Q |
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| T |
41032638 |
tgacacgtcgacactgataataatttgaaaaatggaa |
41032674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 323
Target Start/End: Original strand, 37603902 - 37603963
Alignment:
| Q |
262 |
acactgacacgtcgacactgatagtattttgaaaaatggaagaaattggaagtaactacatg |
323 |
Q |
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| T |
37603902 |
acactaacacgtcgacaccgataacaatttgaaaaatggaagaaattgaatgtaaatacatg |
37603963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 264 - 348
Target Start/End: Complemental strand, 18268075 - 18267991
Alignment:
| Q |
264 |
actgacacgtcgacactgatagtattttgaaaaatggaagaaattggaagtaactacatgtgttggtgttgtgttggacatcgga |
348 |
Q |
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| T |
18268075 |
actgacatgtcaacactgataataatttgagaaaatgaattaattgaacgtaatcacatgtgtcggtgttgtgttggacatcgga |
18267991 |
T |
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