View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15784_low_5 (Length: 322)
Name: NF15784_low_5
Description: NF15784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15784_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 16 - 302
Target Start/End: Complemental strand, 4515495 - 4515220
Alignment:
| Q |
16 |
cagttgtgtggcaagttcaatttacgccaaaatgaattatacgtattatgtcgataaaaaa-ctaaacttaaataaataggttatggaaattgacataat |
114 |
Q |
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| T |
4515495 |
cagttgtgtggcatgttcaatttacgccaaaatgaattttacgccttatgacgataaaaaaactaaacttaaataaataggttatggaaattgacataat |
4515396 |
T |
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| Q |
115 |
acaataaaagttgaaataaatgtcataattttattttaaaactagaatagaagcaacgatgaactttggacatgatgctgctaatcataacgctagttac |
214 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
4515395 |
acaataaaagttgaaataaatgtcataatttttttttaaaactagaatagaagcaacgatgaactttggacatgatgctgctaattgtaacgctagttac |
4515296 |
T |
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| Q |
215 |
gatgatgatcctagatcggtctgatagagttattcgacacattgcttaatttgtcatgcaataaatacacacacatcaagattaactg |
302 |
Q |
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|||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
4515295 |
gatgatgatcatagatcggtctgatagagttatgcgacacatt------------atgcaataaatacacacacatcaagattaactg |
4515220 |
T |
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