View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15784_low_6 (Length: 315)

Name: NF15784_low_6
Description: NF15784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15784_low_6
NF15784_low_6
[»] scaffold0129 (3 HSPs)
scaffold0129 (5-117)||(36026-36138)
scaffold0129 (225-305)||(35839-35919)
scaffold0129 (5-104)||(27782-27881)
[»] chr4 (3 HSPs)
chr4 (225-275)||(16589227-16589277)
chr4 (225-286)||(40568141-40568202)
chr4 (225-277)||(18164965-18165017)
[»] chr5 (9 HSPs)
chr5 (226-287)||(21125318-21125379)
chr5 (225-280)||(25088624-25088679)
chr5 (225-280)||(25146593-25146648)
chr5 (225-280)||(41959077-41959132)
chr5 (225-286)||(17885778-17885839)
chr5 (233-286)||(21040101-21040154)
chr5 (225-286)||(25233704-25233764)
chr5 (225-286)||(25297864-25297924)
chr5 (225-274)||(25919807-25919856)
[»] scaffold0010 (1 HSPs)
scaffold0010 (225-280)||(144978-145033)
[»] chr8 (8 HSPs)
chr8 (225-280)||(13175103-13175158)
chr8 (227-286)||(25653783-25653842)
chr8 (228-287)||(29212105-29212164)
chr8 (225-286)||(5566559-5566620)
chr8 (227-276)||(9662272-9662321)
chr8 (225-286)||(13572778-13572839)
chr8 (227-267)||(10761678-10761718)
chr8 (227-275)||(23389269-23389317)
[»] chr7 (6 HSPs)
chr7 (225-280)||(8391204-8391259)
chr7 (227-286)||(21022468-21022527)
chr7 (225-280)||(34436859-34436914)
chr7 (227-287)||(33440943-33441003)
chr7 (233-286)||(1572971-1573024)
chr7 (225-286)||(31749524-31749585)
[»] chr2 (6 HSPs)
chr2 (225-280)||(30497393-30497448)
chr2 (225-286)||(41100930-41100991)
chr2 (225-280)||(10071207-10071262)
chr2 (233-280)||(39751945-39751992)
chr2 (225-286)||(7318305-7318366)
chr2 (225-262)||(17188728-17188765)
[»] scaffold1462 (1 HSPs)
scaffold1462 (225-286)||(317-378)
[»] chr3 (2 HSPs)
chr3 (225-286)||(26769997-26770058)
chr3 (227-275)||(48689321-48689369)
[»] chr1 (2 HSPs)
chr1 (227-286)||(21770961-21771020)
chr1 (227-275)||(19967811-19967859)
[»] chr6 (1 HSPs)
chr6 (227-280)||(9676300-9676353)


Alignment Details
Target: scaffold0129 (Bit Score: 85; Significance: 2e-40; HSPs: 3)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 5 - 117
Target Start/End: Complemental strand, 36138 - 36026
Alignment:
Q  5 ttagtcccacagtgcttgcactcaaagcaaattaatagtttatataacacaatcgcgcaacaatggctacgtgggtgtcgaagtatgattttagttctat 104  Q
    ||||||||||| |||||||||||||||||||||| | ||||||||||| ||||||||||||||| ||||| ||||||| |||||||||||||||||||||    
T  36138 ttagtcccacattgcttgcactcaaagcaaattatttgtttatataactcaatcgcgcaacaattgctacatgggtgttgaagtatgattttagttctat 36039  T
Q  105 taatgaaaataaa 117  Q
    |||||||||||||    
T  36038 taatgaaaataaa 36026  T

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Target: scaffold0129; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 225 - 305
Target Start/End: Complemental strand, 35919 - 35839
Alignment:
Q  225 cgtccttctaatttgaagatttcttgattttggaccttaatgacaaatttcgccccatgtaaagcactattaacccctttg 305  Q
    |||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||| ||||||||||| ||||    
T  35919 cgtccttctaatttgaagatttcttggttttgaaccttaatgataaatttcgccccatgtaaagaactattaacccttttg 35839  T

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Target: scaffold0129; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 27881 - 27782
Alignment:
Q  5 ttagtcccacagtgcttgcactcaaagcaaattaatagtttatataacacaatcgcgcaacaatggctacgtgggtgtcgaagtatgattttagttctat 104  Q
    ||||||||||| ||||| |||||||||||||||| | ||||||||||| |||||   ||  ||||| || |||||||| |||||||| ||||| ||||||    
T  27881 ttagtcccacactgcttccactcaaagcaaattatttgtttatataactcaatcatccataaatggttaggtgggtgttgaagtatggttttatttctat 27782  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 225 - 275
Target Start/End: Complemental strand, 16589277 - 16589227
Alignment:
Q  225 cgtccttctaatttgaagatttcttgattttggaccttaatgacaaatttc 275  Q
    ||||||| |||||||||||||| ||||||||||||||| ||||||||||||    
T  16589277 cgtccttgtaatttgaagattttttgattttggaccttcatgacaaatttc 16589227  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 286
Target Start/End: Original strand, 40568141 - 40568202
Alignment:
Q  225 cgtccttctaatttgaagatttcttgattttggaccttaatgacaaatttcgccccatgtaa 286  Q
    ||||||| |||||||||  ||||||| ||||| ||||| ||| ||||||||||||| |||||    
T  40568141 cgtccttgtaatttgaatttttcttggttttgaaccttcatggcaaatttcgccccctgtaa 40568202  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 277
Target Start/End: Original strand, 18164965 - 18165017
Alignment:
Q  225 cgtccttctaatttgaagatttcttgattttggaccttaatgacaaatttcgc 277  Q
    ||||||| |||||| ||||||| ||| |||||||||||  |||||||||||||    
T  18164965 cgtccttataatttaaagattttttggttttggaccttcgtgacaaatttcgc 18165017  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 226 - 287
Target Start/End: Complemental strand, 21125379 - 21125318
Alignment:
Q  226 gtccttctaatttgaagatttcttgattttggaccttaatgacaaatttcgccccatgtaaa 287  Q
    |||||| |||||||||||||| ||  ||||||||||| ||||||||||||||||| ||||||    
T  21125379 gtccttataatttgaagattttttagttttggaccttcatgacaaatttcgccccctgtaaa 21125318  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 225 - 280
Target Start/End: Original strand, 25088624 - 25088679
Alignment:
Q  225 cgtccttctaatttgaagatttcttgattttggaccttaatgacaaatttcgcccc 280  Q
    ||||||| |||||| ||||||| ||| ||||||||||| ||| |||||||||||||    
T  25088624 cgtccttgtaattttaagattttttggttttggaccttcatggcaaatttcgcccc 25088679  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 225 - 280
Target Start/End: Original strand, 25146593 - 25146648
Alignment:
Q  225 cgtccttctaatttgaagatttcttgattttggaccttaatgacaaatttcgcccc 280  Q
    ||||||| |||||| ||||||| ||| ||||||||||| ||| |||||||||||||    
T  25146593 cgtccttgtaattttaagattttttggttttggaccttcatggcaaatttcgcccc 25146648  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 225 - 280
Target Start/End: Complemental strand, 41959132 - 41959077
Alignment:
Q  225 cgtccttctaatttgaagatttcttgattttggaccttaatgacaaatttcgcccc 280  Q
    ||||||| ||||||||||| || ||| ||||||||||| ||| |||||||||||||    
T  41959132 cgtccttgtaatttgaagaatttttggttttggaccttcatggcaaatttcgcccc 41959077  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 286
Target Start/End: Original strand, 17885778 - 17885839
Alignment:
Q  225 cgtccttctaatttgaagatttcttgattttggaccttaatgacaaatttcgccccatgtaa 286  Q
    ||||||| |||||||||||||| ||| |||| |||||| |||  |||||||||||| |||||    
T  17885778 cgtccttgtaatttgaagattttttggttttagaccttcatggaaaatttcgccccttgtaa 17885839  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 286
Target Start/End: Complemental strand, 21040154 - 21040101
Alignment:
Q  233 taatttgaagatttcttgattttggaccttaatgacaaatttcgccccatgtaa 286  Q
    |||| ||||||||| ||| ||||||||||| |||| ||||||| ||||||||||    
T  21040154 taatatgaagattttttggttttggaccttcatgaaaaatttcaccccatgtaa 21040101  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 286
Target Start/End: Original strand, 25233704 - 25233764
Alignment:
Q  225 cgtccttctaatttgaagatttcttgattttggaccttaatgacaaatttcgccccatgtaa 286  Q
    ||||||| |||||||||||||| ||| ||||||||||| |||  |||||||||||| |||||    
T  25233704 cgtccttgtaatttgaagattt-ttggttttggaccttcatggaaaatttcgccccttgtaa 25233764  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 286
Target Start/End: Original strand, 25297864 - 25297924
Alignment:
Q  225 cgtccttctaatttgaagatttcttgattttggaccttaatgacaaatttcgccccatgtaa 286  Q
    ||||||| |||||||||||||| ||| ||||||||||| |||  |||||||||||| |||||    
T  25297864 cgtccttgtaatttgaagattt-ttggttttggaccttcatggaaaatttcgccccttgtaa 25297924  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 274
Target Start/End: Complemental strand, 25919856 - 25919807
Alignment:
Q  225 cgtccttctaatttgaagatttcttgattttggaccttaatgacaaattt 274  Q
    ||||||| |||||||||||||| ||| ||||||||||| ||| |||||||    
T  25919856 cgtccttgtaatttgaagattttttggttttggaccttcatggcaaattt 25919807  T

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Target: scaffold0010 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 225 - 280
Target Start/End: Original strand, 144978 - 145033
Alignment:
Q  225 cgtccttctaatttgaagatttcttgattttggaccttaatgacaaatttcgcccc 280  Q
    ||||||| ||||||||| || | ||||||||||||||| |||||||||||||||||    
T  144978 cgtccttgtaatttgaatatcttttgattttggaccttcatgacaaatttcgcccc 145033  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 225 - 280
Target Start/End: Complemental strand, 13175158 - 13175103
Alignment:
Q  225 cgtccttctaatttgaagatttcttgattttggaccttaatgacaaatttcgcccc 280  Q
    ||||||| |||||||||||||| ||  ||||||||||| |||||||||||||||||    
T  13175158 cgtccttgtaatttgaagatttttttgttttggaccttcatgacaaatttcgcccc 13175103  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 227 - 286
Target Start/End: Original strand, 25653783 - 25653842
Alignment:
Q  227 tccttctaatttgaagatttcttgattttggaccttaatgacaaatttcgccccatgtaa 286  Q
    ||||| |||||||||||||| ||||||||||||||| |||  ||||||||| || |||||    
T  25653783 tccttgtaatttgaagattttttgattttggaccttcatggaaaatttcgctccctgtaa 25653842  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 228 - 287
Target Start/End: Complemental strand, 29212164 - 29212105
Alignment:
Q  228 ccttctaatttgaagatttcttgattttggaccttaatgacaaatttcgccccatgtaaa 287  Q
    |||| |||||||||||||| ||| ||||||| | | ||||||||||||||||| ||||||    
T  29212164 ccttgtaatttgaagattttttggttttggatcctcatgacaaatttcgccccctgtaaa 29212105  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 286
Target Start/End: Original strand, 5566559 - 5566620
Alignment:
Q  225 cgtccttctaatttgaagatttcttgattttggaccttaatgacaaatttcgccccatgtaa 286  Q
    ||||||| ||||||||| |||| ||| ||||||||||| |||  |||||||||||| |||||    
T  5566559 cgtccttgtaatttgaatattttttggttttggaccttcatggaaaatttcgccccttgtaa 5566620  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 276
Target Start/End: Original strand, 9662272 - 9662321
Alignment:
Q  227 tccttctaatttgaagatttcttgattttggaccttaatgacaaatttcg 276  Q
    ||||| |||||||||||||| ||| ||||||||||| |||| ||||||||    
T  9662272 tccttgtaatttgaagattttttggttttggaccttcatgaaaaatttcg 9662321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 286
Target Start/End: Complemental strand, 13572839 - 13572778
Alignment:
Q  225 cgtccttctaatttgaagatttcttgattttggaccttaatgacaaatttcgccccatgtaa 286  Q
    ||||||| |||||||||||||| ||| |||| |||||| |||  |||||||||||| |||||    
T  13572839 cgtccttgtaatttgaagattttttggttttagaccttcatggaaaatttcgccccttgtaa 13572778  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 267
Target Start/End: Complemental strand, 10761718 - 10761678
Alignment:
Q  227 tccttctaatttgaagatttcttgattttggaccttaatga 267  Q
    ||||| |||||||||||||| ||||||||||||||| ||||    
T  10761718 tccttgtaatttgaagattttttgattttggaccttcatga 10761678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 275
Target Start/End: Complemental strand, 23389317 - 23389269
Alignment:
Q  227 tccttctaatttgaagatttcttgattttggaccttaatgacaaatttc 275  Q
    ||||| |||||||||||||| ||| ||||||||||| |||| |||||||    
T  23389317 tccttataatttgaagattttttggttttggaccttcatgaaaaatttc 23389269  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 225 - 280
Target Start/End: Complemental strand, 8391259 - 8391204
Alignment:
Q  225 cgtccttctaatttgaagatttcttgattttggaccttaatgacaaatttcgcccc 280  Q
    ||||||| |||||||||||||| ||| ||||||| ||| |||||||||||||||||    
T  8391259 cgtccttataatttgaagattttttggttttggatcttcatgacaaatttcgcccc 8391204  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 227 - 286
Target Start/End: Original strand, 21022468 - 21022527
Alignment:
Q  227 tccttctaatttgaagatttcttgattttggaccttaatgacaaatttcgccccatgtaa 286  Q
    ||||| |||||||||||||| ||| ||||||||||| ||| ||||||||||||| |||||    
T  21022468 tccttgtaatttgaagattttttggttttggaccttcatggcaaatttcgccccctgtaa 21022527  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 225 - 280
Target Start/End: Complemental strand, 34436914 - 34436859
Alignment:
Q  225 cgtccttctaatttgaagatttcttgattttggaccttaatgacaaatttcgcccc 280  Q
    ||||||| |||||||||||||| ||| ||||||||||| ||| |||||||||||||    
T  34436914 cgtccttataatttgaagattttttggttttggaccttcatggcaaatttcgcccc 34436859  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 287
Target Start/End: Original strand, 33440943 - 33441003
Alignment:
Q  227 tccttctaatttgaagatttcttgattttggaccttaatgacaaatttcgccccatgtaaa 287  Q
    ||||| ||||||| | |||| ||| ||||||||||| ||||||||||||||||| ||||||    
T  33440943 tccttgtaatttgtaaattttttggttttggaccttcatgacaaatttcgccccctgtaaa 33441003  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 286
Target Start/End: Complemental strand, 1573024 - 1572971
Alignment:
Q  233 taatttgaagatttcttgattttggaccttaatgacaaatttcgccccatgtaa 286  Q
    |||||||||||||| ||| ||||||||||| |||  |||||||||| |||||||    
T  1573024 taatttgaagattttttggttttggacctttatggaaaatttcgcctcatgtaa 1572971  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 286
Target Start/End: Complemental strand, 31749585 - 31749524
Alignment:
Q  225 cgtccttctaatttgaagatttcttgattttggaccttaatgacaaatttcgccccatgtaa 286  Q
    ||||||| |||||||||||||| ||| |||| |||||| |||| |||||| ||||| |||||    
T  31749585 cgtccttataatttgaagattttttggttttagaccttcatgaaaaattttgccccctgtaa 31749524  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 225 - 280
Target Start/End: Complemental strand, 30497448 - 30497393
Alignment:
Q  225 cgtccttctaatttgaagatttcttgattttggaccttaatgacaaatttcgcccc 280  Q
    ||||||| |||||||||||||| ||| ||||||||||| |||| ||||||||||||    
T  30497448 cgtccttgtaatttgaagattttttggttttggaccttcatgaaaaatttcgcccc 30497393  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 225 - 286
Target Start/End: Complemental strand, 41100991 - 41100930
Alignment:
Q  225 cgtccttctaatttgaagatttcttgattttggaccttaatgacaaatttcgccccatgtaa 286  Q
    ||||||| |||||||||||||| ||| ||||||| ||| |||| |||||||||||| |||||    
T  41100991 cgtccttgtaatttgaagattttttggttttggatcttcatgaaaaatttcgccccctgtaa 41100930  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 225 - 280
Target Start/End: Original strand, 10071207 - 10071262
Alignment:
Q  225 cgtccttctaatttgaagatttcttgattttggaccttaatgacaaatttcgcccc 280  Q
    ||||||| |||||| ||||||| ||| ||||||||||| ||| |||||||||||||    
T  10071207 cgtccttgtaattttaagattttttggttttggaccttcatggcaaatttcgcccc 10071262  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 233 - 280
Target Start/End: Original strand, 39751945 - 39751992
Alignment:
Q  233 taatttgaagatttcttgattttggaccttaatgacaaatttcgcccc 280  Q
    |||||||||||||| ||| ||||||||||| ||| |||||||||||||    
T  39751945 taatttgaagattttttggttttggaccttcatggcaaatttcgcccc 39751992  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 286
Target Start/End: Complemental strand, 7318366 - 7318305
Alignment:
Q  225 cgtccttctaatttgaagatttcttgattttggaccttaatgacaaatttcgccccatgtaa 286  Q
    ||||||| |||||||||||||| ||| ||||||||||| |||  ||||||| |||| |||||    
T  7318366 cgtccttataatttgaagattttttggttttggaccttcatggaaaatttcaccccctgtaa 7318305  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 262
Target Start/End: Original strand, 17188728 - 17188765
Alignment:
Q  225 cgtccttctaatttgaagatttcttgattttggacctt 262  Q
    ||||||| |||||||||||||| |||||||||||||||    
T  17188728 cgtccttgtaatttgaagattttttgattttggacctt 17188765  T

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Target: scaffold1462 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold1462
Description:

Target: scaffold1462; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 225 - 286
Target Start/End: Complemental strand, 378 - 317
Alignment:
Q  225 cgtccttctaatttgaagatttcttgattttggaccttaatgacaaatttcgccccatgtaa 286  Q
    ||||||| |||||||||||||| ||| ||||||||||| ||| |||||||| |||| |||||    
T  378 cgtccttgtaatttgaagattttttggttttggaccttcatggcaaatttcaccccttgtaa 317  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 225 - 286
Target Start/End: Original strand, 26769997 - 26770058
Alignment:
Q  225 cgtccttctaatttgaagatttcttgattttggaccttaatgacaaatttcgccccatgtaa 286  Q
    ||||||| |||||||||||||| ||| ||||||||||| |||  |||||||||||| |||||    
T  26769997 cgtccttgtaatttgaagattttttgcttttggaccttcatggaaaatttcgccccttgtaa 26770058  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 275
Target Start/End: Complemental strand, 48689369 - 48689321
Alignment:
Q  227 tccttctaatttgaagatttcttgattttggaccttaatgacaaatttc 275  Q
    ||||| |||||||||||||| ||||||||||||||| |||  |||||||    
T  48689369 tccttgtaatttgaagattttttgattttggaccttcatggaaaatttc 48689321  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 227 - 286
Target Start/End: Complemental strand, 21771020 - 21770961
Alignment:
Q  227 tccttctaatttgaagatttcttgattttggaccttaatgacaaatttcgccccatgtaa 286  Q
    ||||| |||||||||||||| ||| ||||||||||| |||  ||||||||| ||||||||    
T  21771020 tccttgtaatttgaagattttttggttttggaccttcatggaaaatttcgctccatgtaa 21770961  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 275
Target Start/End: Complemental strand, 19967859 - 19967811
Alignment:
Q  227 tccttctaatttgaagatttcttgattttggaccttaatgacaaatttc 275  Q
    ||||| |||||||||||||| ||||||||||||||| |||  |||||||    
T  19967859 tccttgtaatttgaagattttttgattttggaccttcatggaaaatttc 19967811  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 280
Target Start/End: Original strand, 9676300 - 9676353
Alignment:
Q  227 tccttctaatttgaagatttcttgattttggaccttaatgacaaatttcgcccc 280  Q
    ||||| |||||||||||||| ||| ||||||||||| |||| ||||||| ||||    
T  9676300 tccttataatttgaagattttttggttttggaccttcatgaaaaatttcacccc 9676353  T

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