View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15785_high_1 (Length: 638)
Name: NF15785_high_1
Description: NF15785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15785_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-162; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 54179976 - 54179679
Alignment:
| Q |
1 |
atcaatgagacattgcttaatttttcaaaaagggaagtgtttgctatgagaaatgaggttataagtctaattccaagaattgtttatcgttatccaagtt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
54179976 |
atcaatgagacattgcttaatttttcaaaaagggaagtgtttgctatgagaaatgaggttataagtctaattccaagaattgtgtatcgttatccaagtt |
54179877 |
T |
|
| Q |
101 |
ctagattagaaacacttgaagatgcgtttgatgtagctgttaagggaatccttggaagaattgaagcaatgagaagagattacaaatggtaactattctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54179876 |
ctagattagaaacacttgaagatgcgtttgatgtagctgttaagggaatccttggaagaattgaagcaatgagaagagattacaaatggtaactattctt |
54179777 |
T |
|
| Q |
201 |
agcatgcagaagttgttgctcattaacaattgcatttgtttttgtgtaattttatcttgagattacgcacacattctttttgtatttcctccaacaac |
298 |
Q |
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| T |
54179776 |
agcatgcagaagttgttgctcattaacaattgcatttgtttttgtgtaattttatcttgagattaggcacacattctttttgtatttcctccaacaac |
54179679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 377 - 620
Target Start/End: Complemental strand, 54179599 - 54179356
Alignment:
| Q |
377 |
ttggaattctagtgagtgatgatagatcaaatgaagggaatataagaaaaataactcatactgaatgacttattttaggtggagatattttaaggcaacg |
476 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54179599 |
ttggaattctagtgagtgatgatagatcaaatgaagggaatataagaaaaataactcatactgaatgacttattttaggtggagatattttaaggcaacg |
54179500 |
T |
|
| Q |
477 |
gtttcatgatcctaaagcatatcagttcccttatgatgattaatatggtttattaataatatttttacgacacttgttgatggttaatacattttatcta |
576 |
Q |
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| T |
54179499 |
gtttcatgatcctaaagcatatcagttcccttataatgattaatatggtttattaataatatttttacgacacttgttgatggttaatacattttatcta |
54179400 |
T |
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| Q |
577 |
ccaatgatttcaaattttctttgagatagatttgtactattctc |
620 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54179399 |
ccaatgatttcaaattttctttgagatagatttgtactattctc |
54179356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 100; Significance: 4e-49; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 4 - 216
Target Start/End: Original strand, 41948679 - 41948893
Alignment:
| Q |
4 |
aatgagacattgcttaatttttcaaaaagggaagtgtttgctatgagaaatgaggttataagtctaattccaagaattgtttatcgttatccaagttcta |
103 |
Q |
| |
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|||||||||||| | ||| |||||||||| |||||||| || |||||| | ||||||||||| || ||||| || ||||| |||||||||||| |||||| |
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| T |
41948679 |
aatgagacattgttcaatgtttcaaaaagtgaagtgttggcaatgagagaagaggttataagactcattccgaggattgtgtatcgttatccaggttcta |
41948778 |
T |
|
| Q |
104 |
gattagaaacacttgaagatgcgtttgatgtagctgttaagggaatccttggaagaattgaagcaatgagaag--agattacaaatggtaactattctta |
201 |
Q |
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||||||| ||| |||||||||| |||||| |||||||||||||| | |||||||||||||||||||||||||| | |||||||||| ||| ||||||| |
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| T |
41948779 |
gattagagacaattgaagatgcttttgatatagctgttaagggagttcttggaagaattgaagcaatgagaagacaaattacaaatgtaaacgattctta |
41948878 |
T |
|
| Q |
202 |
gcatgcagaagttgt |
216 |
Q |
| |
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|||||| ||||||| |
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| T |
41948879 |
ccatgcaaaagttgt |
41948893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 4 - 289
Target Start/End: Original strand, 41943165 - 41943447
Alignment:
| Q |
4 |
aatgagacattgcttaatttttcaaaaagggaagtgtttgctatgagaaatgaggttataagtctaattccaagaattgtttatcgttatccaagttcta |
103 |
Q |
| |
|
|||||||||||| | ||| |||||||||| |||||||| || |||||| | || |||||||| || ||||| || ||||| |||||||||||| |||||| |
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| T |
41943165 |
aatgagacattgttcaatgtttcaaaaagtgaagtgttggcaatgagagaagaagttataagactcattccgaggattgtgtatcgttatccaggttcta |
41943264 |
T |
|
| Q |
104 |
gattagaaacacttgaagatgcgtttgatgtagctgttaagggaatccttggaagaattgaagcaatgagaaga-gattacaaatggtaactattcttag |
202 |
Q |
| |
|
||||||| ||| |||||||||| |||||| |||||||||||||| | ||||||||||||||||||||||||||| | |||||||| ||| ||||||| |
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| T |
41943265 |
gattagagacaattgaagatgcttttgatatagctgttaagggagttcttggaagaattgaagcaatgagaagacaaatacaaatgtaaacgattcttac |
41943364 |
T |
|
| Q |
203 |
catgcagaagttgttgctcattaacaa-ttgcatttgtttttgtgtaattttatcttgagattacgcacacattctttttgtatttcc |
289 |
Q |
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| T |
41943365 |
cttgcaaaagttgtcgccctttaacaatttgcatt--tttttgtgtaatttgat-ttgagattagg--catattctgtttgtatttcc |
41943447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 22795167 - 22795405
Alignment:
| Q |
1 |
atcaatgagacattgcttaatttttcaaaaagggaagtgtttgctatgagaaatgaggttataagtctaattccaagaattgtttatcgttatccaagtt |
100 |
Q |
| |
|
||||||||||||||| ||||| | | |||| |||||||| | |||||| ||||||| ||||| ||||||| | ||||| || ||||||||||||| |
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| T |
22795167 |
atcaatgagacattgtttaatgtacaagaaagcgaagtgttggaaatgagagatgaggtcataagattaattccgaagattgtataccgttatccaagtt |
22795266 |
T |
|
| Q |
101 |
ctagattagaaacacttgaagatgcgtttgatgtagctgttaagggaatccttggaagaattgaagcaatgagaag--agattacaaatggtaactattc |
198 |
Q |
| |
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|||| || || |||||||| ||||| ||||||||||||||||||||| | ||| ||||||||||| ||||| ||| |||| ||||||| | | |||| |
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| T |
22795267 |
ctaggttggagacacttgatgatgcatttgatgtagctgttaagggagttcttcaaagaattgaagaaatgaaaaggtagatcacaaatgtcagcaattc |
22795366 |
T |
|
| Q |
199 |
ttagcatgcagaagttgttgctcattaacaattgcattt |
237 |
Q |
| |
|
|| |||| ||||||||||| | |||||||||||||| |
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| T |
22795367 |
tttccatgtagaagttgttgtcctctaacaattgcattt |
22795405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 95; Significance: 4e-46; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 4 - 231
Target Start/End: Original strand, 1211432 - 1211661
Alignment:
| Q |
4 |
aatgagacattgcttaatttttcaaaaagggaagtgtttgctatgagaaatgaggttataagtctaattccaagaattgtttatcgttatccaagttcta |
103 |
Q |
| |
|
||||||||||| | ||| |||||||||| |||||||| || |||||| | ||||||||||| || ||||| || ||||| |||||||||||| | |||| |
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| T |
1211432 |
aatgagacatttttcaatgtttcaaaaagtgaagtgttggcaatgagagaagaggttataagactcattccgaggattgtgtatcgttatccaggatcta |
1211531 |
T |
|
| Q |
104 |
gattagaaacacttgaagatgcgtttgatgtagctgttaagggaatccttggaagaattgaagcaatgagaag--agattacaaatggtaactattctta |
201 |
Q |
| |
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||||||| ||| |||||||||| |||||| |||||||||||||| | |||||||||||||||||||||||||| | |||||||||| ||| ||||||| |
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| T |
1211532 |
gattagagacaattgaagatgcttttgatatagctgttaagggagttcttggaagaattgaagcaatgagaagacaaattacaaatgtaaacgattctta |
1211631 |
T |
|
| Q |
202 |
gcatgcagaagttgttgctcattaacaatt |
231 |
Q |
| |
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|||||| ||||||| || | ||||||||| |
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| T |
1211632 |
ccatgcaaaagttgtcgccctttaacaatt |
1211661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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