View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15785_high_12 (Length: 249)
Name: NF15785_high_12
Description: NF15785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15785_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 28870016 - 28869778
Alignment:
| Q |
1 |
aaaaggaaattatttatcaatgttgtcaaatatcggctatggttgattgtggtgacatactttttgacaaccaccatggccaatttgtgatggaagtgcc |
100 |
Q |
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| T |
28870016 |
aaaaggaaattatttatcaatgttgtcaaatatcggctatggttgattgtggtgacatactttttgacaaccaccatggccaatttgtgatggaagtgcc |
28869917 |
T |
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| Q |
101 |
atgatgttttatggtggcttaaaatgatgggtttttgtctttcagctatcctcaattgtcgattgcaatcggtaataccgacatatatacaaaattttga |
200 |
Q |
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| T |
28869916 |
atgatgttttatggtggcttaaaatgaggggtttttgtctttcagctatcctcaattgtcgattgcaatcggtaataccgacatatttacaaaattttga |
28869817 |
T |
|
| Q |
201 |
aagtcaaaatagttgttatacacaccctttggatttcat |
239 |
Q |
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| T |
28869816 |
aagtcaaaatagttgttatacacaccctttggatttcat |
28869778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 51 - 202
Target Start/End: Complemental strand, 12643888 - 12643737
Alignment:
| Q |
51 |
ggtgacatactttttgacaaccaccatggccaatttgtgatggaagtgccatgatgttttatggtggcttaaaatgatgggtttttgtctttcagctatc |
150 |
Q |
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| T |
12643888 |
ggtgacatactttttgacaaccaccatgcccaatttgtgatggaagtgccatagtgttttatggcggcttaaaatgat-ggtttttgtcttacggccatc |
12643790 |
T |
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| Q |
151 |
ctcaattgtcgattg-caatcggtaataccgacatatatacaaaattttgaaa |
202 |
Q |
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| T |
12643789 |
ctcaattgttgattgacaattggtaaaaccgacatacatacaaaattttgaaa |
12643737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 90
Target Start/End: Original strand, 18671316 - 18671345
Alignment:
| Q |
61 |
tttttgacaaccaccatggccaatttgtga |
90 |
Q |
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| T |
18671316 |
tttttgacaaccaccatggccaatttgtga |
18671345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 85
Target Start/End: Complemental strand, 439154 - 439100
Alignment:
| Q |
31 |
tatcggctatggttgattgtggtgacatactttttgacaaccaccatggccaatt |
85 |
Q |
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| T |
439154 |
tatcggccatggcggattgcgctgacatactttgtgacaaccaccatggccaatt |
439100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 89
Target Start/End: Complemental strand, 29187215 - 29187187
Alignment:
| Q |
61 |
tttttgacaaccaccatggccaatttgtg |
89 |
Q |
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| T |
29187215 |
tttttgacaaccaccatggccaatttgtg |
29187187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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