View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15785_high_3 (Length: 512)
Name: NF15785_high_3
Description: NF15785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15785_high_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 466; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 15 - 508
Target Start/End: Original strand, 40279811 - 40280304
Alignment:
| Q |
15 |
atatcagcatgtttgcagaaatacttcaattgatcaagattgcaacatcctatcatttgacccaacagcaagaacaaccaatttatatttctcttctttg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40279811 |
atatcagcatgtttgcagaaatacttcaattgatcaagattgcaacatcctatcatttgacccaacagcaagaacaaccaatttatatttctcttctttg |
40279910 |
T |
|
| Q |
115 |
tcatcaatggatgcattgctttctcttgtccacaactcttgcagtttggtatcactggattcatccattcaccgggtgcatgatcacacatctcgttcct |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
40279911 |
tcatcaatggatgcattgctttctcttgtccacaactcttgcagtttggtatcactggattcatccattcaacgggtgcacgatcacacatctcgttcct |
40280010 |
T |
|
| Q |
215 |
tctttcctctatgaaccttgtcactttctcaaaattctcaaccaaatcaaactgaatgtcttgttgaaacttacagactttgcattcaagagttccagag |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40280011 |
tctttcctctatgaaccttgtcactttctcaaaattctcaaccaaatcaaactgaatgtcttgttgaaacttacagactttgcattcaagagttccagag |
40280110 |
T |
|
| Q |
315 |
atagtcttgagtttcactacggataacatgtggtcaagtgtgtgcaagatggcacgtttagaagtggcccatgggaatggcggtggaactgtcatgctct |
414 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
40280111 |
atagtattgagtttcactacggataacatgtggtcaagtgtgtgcaagatggcacgtttcgaagtggcccatgggaatggtggtggaactgccatgctct |
40280210 |
T |
|
| Q |
415 |
tagttagtcgtctctttttcacaggttggtgctttggtagaatacgttgacgtcgtcccagcaccttattggtaggaggagaaagaacttgttc |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
40280211 |
tagttagtcgtctctttttcacaggttggtgctttggtagaatacgttgacgtcgtcccagcaccttattggtaggaggagaaagatcttgttc |
40280304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 15 - 508
Target Start/End: Complemental strand, 40458539 - 40458046
Alignment:
| Q |
15 |
atatcagcatgtttgcagaaatacttcaattgatcaagattgcaacatcctatcatttgacccaacagcaagaacaaccaatttatatttctcttctttg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40458539 |
atatcagcatgtttgcagaaatacttcaattgatcaagattgcaacatcctatcatttgacccaacagcaagaacaaccaatttatatttctcttctttg |
40458440 |
T |
|
| Q |
115 |
tcatcaatggatgcattgctttctcttgtccacaactcttgcagtttggtatcactggattcatccattcaccgggtgcatgatcacacatctcgttcct |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
40458439 |
tcatcaatggatgcattgctttctcttgtccacaactcttgcagtttggtatcactggattcatccattcaacgggtgcacgatcacacatctcgttcct |
40458340 |
T |
|
| Q |
215 |
tctttcctctatgaaccttgtcactttctcaaaattctcaaccaaatcaaactgaatgtcttgttgaaacttacagactttgcattcaagagttccagag |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40458339 |
tctttcctctatgaaccttgtcactttctcaaaattctcaaccaaatcaaactgaatgtcttgttgaaacttacagactttgcattcaagagttccagag |
40458240 |
T |
|
| Q |
315 |
atagtcttgagtttcactacggataacatgtggtcaagtgtgtgcaagatggcacgtttagaagtggcccatgggaatggcggtggaactgtcatgctct |
414 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
40458239 |
atagtattgagtttcactacggataacatgtggtcaagtgtgtgcaagatggcacgtttcgaagtggcccatgggaatggtggtggaactgccatgctct |
40458140 |
T |
|
| Q |
415 |
tagttagtcgtctctttttcacaggttggtgctttggtagaatacgttgacgtcgtcccagcaccttattggtaggaggagaaagaacttgttc |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
40458139 |
tagttagtcgtctctttttcacaggttggtgctttggtagaatacgttgacgtcgtcccagcaccttattggtaggaggagaaagatcttgttc |
40458046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 15 - 408
Target Start/End: Original strand, 40284772 - 40285165
Alignment:
| Q |
15 |
atatcagcatgtttgcagaaatacttcaattgatcaagattgcaacatcctatcatttgacccaacagcaagaacaaccaatttatatttctcttctttg |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||| |||||||||||||||||||| || ||||||||||||| |
|
|
| T |
40284772 |
atatcagcatgtttgcagaaatacttcaattgatcgagcttgcaacaccctatcatttgacctaacagcaagaacaaccaattgatgtttctcttctttg |
40284871 |
T |
|
| Q |
115 |
tcatcaatggatgcattgctttctcttgtccacaactcttgcagtttggtatcactggattcatccattcaccgggtgcatgatcacacatctcgttcct |
214 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| ||| |||||| |||||||| |||||||||||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
40284872 |
tcatcaatggatgcattgctttctcttttccacaagtctcgcagttcggtatcacaggattcatccattcaccgggtgcacgatcacacatctcattcct |
40284971 |
T |
|
| Q |
215 |
tctttcctctatgaaccttgtcactttctcaaaattctcaaccaaatcaaactgaatgtcttgttgaaacttacagactttgcattcaagagttccagag |
314 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
40284972 |
tctttcctctatgaaccttgtcactttcctgaaattctcaaccaaatcaaactgaatgtcttgttgaaacttacagaatttgcattcaagagttccagag |
40285071 |
T |
|
| Q |
315 |
atagtcttgagtttcactacggataacatgtggtcaagtgtgtgcaagatggcacgtttagaagtggcccatgggaatggcggtggaactgtca |
408 |
Q |
| |
|
||||||| |||||||| ||| ||||||| |||||| ||||||| |||| | || ||||| ||||| |||||| |||| || ||||| ||||||| |
|
|
| T |
40285072 |
atagtctggagtttcaatacagataacaagtggtccagtgtgtacaaggtagcgcgttttgaagttgcccataggaacggtggtggtactgtca |
40285165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 23 - 148
Target Start/End: Original strand, 39600463 - 39600588
Alignment:
| Q |
23 |
atgtttgcagaaatacttcaattgatcaagattgcaacatcctatcatttgacccaacagcaagaacaaccaatttatatttctcttctttgtcatcaat |
122 |
Q |
| |
|
||||||||||||||| ||||| || | ||| |||||||| || ||||| |||||||||| ||| ||||||||||| || ||||||||||||| || | | |
|
|
| T |
39600463 |
atgtttgcagaaatatttcaaatgttgaagcttgcaacacccaatcatctgacccaacaacaaaaacaaccaattgattgttctcttctttgtgattatt |
39600562 |
T |
|
| Q |
123 |
ggatgcattgctttctcttgtccaca |
148 |
Q |
| |
|
|||| ||| || || ||||||||||| |
|
|
| T |
39600563 |
ggattcatagcgttttcttgtccaca |
39600588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 27 - 148
Target Start/End: Complemental strand, 39781506 - 39781385
Alignment:
| Q |
27 |
ttgcagaaatacttcaattgatcaagattgcaacatcctatcatttgacccaacagcaagaacaaccaatttatatttctcttctttgtcatcaatggat |
126 |
Q |
| |
|
||||||||||||||||| || | ||| |||||||| || ||||| |||||||| | ||||||||||||||| || ||||||||||||| || | ||||| |
|
|
| T |
39781506 |
ttgcagaaatacttcaaatgttgaagcttgcaacacccaatcatctgacccaataacaagaacaaccaattaatggttctcttctttgtgattattggat |
39781407 |
T |
|
| Q |
127 |
gcattgctttctcttgtccaca |
148 |
Q |
| |
|
||| || || ||||||||||| |
|
|
| T |
39781406 |
tcatagcattttcttgtccaca |
39781385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 27 - 112
Target Start/End: Original strand, 25044391 - 25044476
Alignment:
| Q |
27 |
ttgcagaaatacttcaattgatcaagattgcaacatcctatcatttgacccaacagcaagaacaaccaatttatatttctcttctt |
112 |
Q |
| |
|
||||| |||||||||||||| | |||||||||||| || | |||||| |||||||||| ||||||||||| ||||| ||||||| |
|
|
| T |
25044391 |
ttgcaaaaatacttcaattgtttaagattgcaacaacccagcatttgtcccaacagcagaaacaaccaattgatattcttcttctt |
25044476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 27 - 103
Target Start/End: Original strand, 25040653 - 25040729
Alignment:
| Q |
27 |
ttgcagaaatacttcaattgatcaagattgcaacatcctatcatttgacccaacagcaagaacaaccaatttatatt |
103 |
Q |
| |
|
||||| |||||||||||||| ||||| |||||||| || || ||||| |||| || || ||||||||||| ||||| |
|
|
| T |
25040653 |
ttgcaaaaatacttcaattgttcaagcttgcaacaaccaattatttgtcccagcaacagaaacaaccaattgatatt |
25040729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 27 - 103
Target Start/End: Original strand, 28649868 - 28649944
Alignment:
| Q |
27 |
ttgcagaaatacttcaattgatcaagattgcaacatcctatcatttgacccaacagcaagaacaaccaatttatatt |
103 |
Q |
| |
|
||||| |||||||||||||| | |||||||||||| || | |||||| ||||||| ||| ||||||||||| ||||| |
|
|
| T |
28649868 |
ttgcaaaaatacttcaattgtttaagattgcaacaaccaagcatttgtcccaacaacaaaaacaaccaattaatatt |
28649944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University