View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15785_high_6 (Length: 381)
Name: NF15785_high_6
Description: NF15785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15785_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 17 - 364
Target Start/End: Original strand, 33551689 - 33552036
Alignment:
| Q |
17 |
agttagaagttgtatatttggaacaatatcttctctccttgtaccgtaaagcatttgaacaacaactatcccccgctgtggctgcatctgcatctaccgt |
116 |
Q |
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| T |
33551689 |
agttagaagttgtatatttggaacaatatcttctctccttgtaccgtaaagcatttgaacaacaattatcccccgctgtggctgcatctgcatctaccgt |
33551788 |
T |
|
| Q |
117 |
ggaagaaagcgaaaagtctcctcctgtaacaacacctagagcaagattccttcaagtttctccacccgaggtcttaaccaaaaaagaatgttcagatgtg |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33551789 |
ggaagaaagcgaaaagtctcctcctgtaacaacacctagagcaagattccttcaagtttctccacccgaggtcttaaccaaaaaagaatgttcagatgta |
33551888 |
T |
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| Q |
217 |
caatgtattgatcatgagcttcacacacttcaaaaggaatgtaatagacataaacttgagactccagataaagaatacattgtacatcatccagaagaaa |
316 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33551889 |
caatgtattgatcatgagcttcatacacttcaaaaggaatgtaatagacataaacttgagactccagataaagaatacattgtacatcatccagaagaaa |
33551988 |
T |
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| Q |
317 |
agcagtcagactctagcgtgcatcgatgtcactcctcgttatcccaat |
364 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33551989 |
agcagtcagactctagcgtgcatcgatgtcactcctcgttatcccaat |
33552036 |
T |
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