View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15785_low_1 (Length: 942)
Name: NF15785_low_1
Description: NF15785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15785_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 241 - 522
Target Start/End: Original strand, 49568104 - 49568386
Alignment:
| Q |
241 |
gtggaatttatcacatgttatctaatgacgaacatgttcacgacacaaatgtatcaaatgttatgtggattaaatatgttcctatgaaggtttcattatt |
340 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49568104 |
gtggaatttatcacatgttatctaatgacgagcatgttgacgacacaaatgtatcaaatgttgtgtggattaaatatgttcctatgaaggtttcattatt |
49568203 |
T |
|
| Q |
341 |
tagttgtttattactaaattatatgattcttacaaaggacaattttacttgttattcatgtggattaaatacgatatcagcaagccaatgaatgaaagga |
440 |
Q |
| |
|
||||||||| ||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
49568204 |
tagttgtttgttactgaatgatatgattcctacaaaggacaattttacttgttattcatgtggattaaatacgatgtcagcaagccaatgaatgaaagga |
49568303 |
T |
|
| Q |
441 |
gaagaagagtcctcaaaat-aaacacccataaaagagtggaatcaaattgattgtgctcacatgaattccttgaagatgtgat |
522 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
49568304 |
gaagaagagtcctcaaaataaaacacccataaaagagtggaatcaaattgattgtgctcacatgcattccttgaagatgtgat |
49568386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 177; E-Value: 6e-95
Query Start/End: Original strand, 739 - 923
Target Start/End: Original strand, 49568965 - 49569149
Alignment:
| Q |
739 |
aaattgtttcggtgtacccaaatccctcaccaatagatcaatcctagtggctttggctttacatctagctagctagtttgacactgaacaaggataatct |
838 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49568965 |
aaattgtttcggtgtacccaaatccctcaccaatagatcaatcctagtggctttggctttacatctagctagctagtttgacactgaacaaggataatct |
49569064 |
T |
|
| Q |
839 |
caacccatttattaatgaatatggggaaaatgagatgtgataagtcaaggatatctcattacctcttacaaaaaagggacgtctc |
923 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
49569065 |
caacccatttattaatgaataaggggaaaatgagatgtgataagtcaaggagatctcattacctcttacaaaaaagggacgtctc |
49569149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 137; E-Value: 5e-71
Query Start/End: Original strand, 590 - 730
Target Start/End: Original strand, 49568385 - 49568525
Alignment:
| Q |
590 |
attattataagtttaacattgatgttgttattcgatgaataatatatggggtattggaatagttttattagcgatgcagatgatttcttgttggccgcgg |
689 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49568385 |
attattataagtttaacattgatgttgttgttcgatgaataatatatggggtattggaatagttttattagcgatgcagatgatttcttgttggccgcgg |
49568484 |
T |
|
| Q |
690 |
tcactcgctcatttgaggctgcatgcatacgatgttgataa |
730 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49568485 |
tcactcgctcatttgaggctgcatgcatacgatgttgataa |
49568525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 124; E-Value: 3e-63
Query Start/End: Original strand, 39 - 246
Target Start/End: Original strand, 49567805 - 49568007
Alignment:
| Q |
39 |
gcggcaatatgaggcattcattatgttgtactatagatgaatgtcttttagttgatgatagtttagtagggttgtaggtaatggggttaatactcnnnnn |
138 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |
|
|
| T |
49567805 |
gcggcaatatgaggcattcat-atgctgtactatagatgaatgtcttttagttgatgataatttagtagggttgtaggtaatcaggttaatactcttttt |
49567903 |
T |
|
| Q |
139 |
nnnnattgatcctttggttggagtgtgctccttttgcgtgaccatttactgttggtagctgatatcaatagttaactattagctagcatgttgatacgaa |
238 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||| |
|
|
| T |
49567904 |
ttttattgatcctttggttggagtgtggtccttttgcgtgatcatttactgttggtagctgatatgaatagttaactat----tagcatgttgatatgaa |
49567999 |
T |
|
| Q |
239 |
gggtggaa |
246 |
Q |
| |
|
|||||||| |
|
|
| T |
49568000 |
gggtggaa |
49568007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 739 - 857
Target Start/End: Original strand, 49560837 - 49560950
Alignment:
| Q |
739 |
aaattgtttcggtgtacccaaatccctcaccaatagatcaatcctagtggctttggctttacatctagctagctagtttgacactgaacaaggataatct |
838 |
Q |
| |
|
||||||||| ||||||||||||||| ||| ||||||||||||||||| || |||||||||||| ||||||| ||| ||||||||||||| ||||| |
|
|
| T |
49560837 |
aaattgttttggtgtacccaaatccgtcatcaatagatcaatcctagagggtttggctttacaactagctaattag-----cactgaacaaggagaatct |
49560931 |
T |
|
| Q |
839 |
caacccatttattaatgaa |
857 |
Q |
| |
|
||| | |||||||||||| |
|
|
| T |
49560932 |
caatgcttttattaatgaa |
49560950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University