View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15785_low_12 (Length: 319)
Name: NF15785_low_12
Description: NF15785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15785_low_12 |
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| [»] scaffold0059 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 46 - 302
Target Start/End: Complemental strand, 12610522 - 12610264
Alignment:
| Q |
46 |
ttagcaatgtgtcgcgaattcaaggttttt-gatgtcttgatgacagcgatagaatcagaatacatgtttgcaatttttt-gcattatcaaggattgtga |
143 |
Q |
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| T |
12610522 |
ttagcaatgtgtcgcgaattcaaggttttttgatgtcttgatgacagcgatagaatcagaatacatgtttgcaatttttttgcattatcaaggattgtga |
12610423 |
T |
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| Q |
144 |
tgcaacctcgatttaaaaccttgtgatgacctattggatgccatcaaaatatctcttttagctctctcttttgatatccttgcattttcttttcagaata |
243 |
Q |
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| T |
12610422 |
tgcaacctcgatttaaaaccttgtgatgacctattggatgccatcaaaatatctcttttagctctctcttttgatatccttgcattttcttttcagaata |
12610323 |
T |
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| Q |
244 |
tcgttggtgctggaggtgatacatcagcttctactatagtttgggcgatgtcagagttg |
302 |
Q |
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| T |
12610322 |
tcgttggtgctggaggtgatacatcagcttctactatagtttgggcaatgtcagagttg |
12610264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 12610571 - 12610543
Alignment:
| Q |
1 |
ccactatttgccatgttaaaacaacatat |
29 |
Q |
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| T |
12610571 |
ccactatttgccatgttaaaacaacatat |
12610543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 301
Target Start/End: Complemental strand, 12637426 - 12637358
Alignment:
| Q |
233 |
ttttcagaatatcgttggtgctggaggtgatacatcagcttctactatagtttgggcgatgtcagagtt |
301 |
Q |
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| T |
12637426 |
ttttcaggacatcattggtgctggaggtgaaacatcatccactaccatagtttgggcaatggcagagtt |
12637358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 302
Target Start/End: Complemental strand, 62596 - 62512
Alignment:
| Q |
219 |
atccttgcattttc-ttttcagaatatcgttggtgctggaggtgatacatcagcttctactatagtttgggcgatgtcagagttg |
302 |
Q |
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| T |
62596 |
atccttgcattttaattttcaggacatgtttggtgctggaggtgatacatcagctttgagcgtagtttgggcaatggcagagttg |
62512 |
T |
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