View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15785_low_13 (Length: 299)
Name: NF15785_low_13
Description: NF15785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15785_low_13 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 19 - 299
Target Start/End: Original strand, 8599086 - 8599368
Alignment:
| Q |
19 |
ttagtaactttagtttctgctaaaaagtacgaacaaatattataaactaatgagaacttttataaagttggtgagagaattatggtaaacaaggaatcca |
118 |
Q |
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| T |
8599086 |
ttagtaactttagtttctgctaaaaagtacgagcaaatattataaactaatgagaacttttataaagttggtgagagaattatggtaaacaaggcatcca |
8599185 |
T |
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| Q |
119 |
acttcaattatt----tgaacttatgaattttaatttatctactgtaattttagtctaatatgcacatattttagcaaaatattttgattggagtttcta |
214 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||||||||||||||||| ||||||||| |
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| T |
8599186 |
acttcaattatttgaatgaacttatgaattttaatttatctactgcaattttagtcta--acgcacatattttagcaaaatattttgattagagtttcta |
8599283 |
T |
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| Q |
215 |
caannnnnnncttcaagatttatattccaataataatcgtaaaatattttgtcaacaccacaatttctcctacaaacttaatttt |
299 |
Q |
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| T |
8599284 |
caatttttttcttcaagatttatattccaataataatcgtaaaatattttgtcaacaccacaatttctcctacaaacttaatttt |
8599368 |
T |
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