View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15785_low_15 (Length: 270)
Name: NF15785_low_15
Description: NF15785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15785_low_15 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 93 - 270
Target Start/End: Original strand, 45640354 - 45640539
Alignment:
| Q |
93 |
tagtataaagcttttgtttctacatcaaaatgcttatcatatatgaaaa--------actgagggacacttgcatcctaactctcaaaatcaaaacaaaa |
184 |
Q |
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| T |
45640354 |
tagtataaagcttttgtttctacatcaaaatgcttatcatatattaaaaacttaaaaactgagggacacttgcatcctaactcccaaaatcaaaacaaaa |
45640453 |
T |
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| Q |
185 |
gctgtcattgatattgccagacatttttaggaggtttgctgtacaagataactggcatacatatgtatctgtcatataatggacaa |
270 |
Q |
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| T |
45640454 |
actgtcattgatatagccagacatttttaggaggtttgctgtacaagataactggcttacatatgtgtctgtcatataatggacaa |
45640539 |
T |
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Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 86 - 173
Target Start/End: Original strand, 45646487 - 45646575
Alignment:
| Q |
86 |
tgatacgtagtataaagcttttgtttct-acatcaaaatgcttatcatatatgaaaaactgagggacacttgcatcctaactctcaaaa |
173 |
Q |
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| T |
45646487 |
tgatacatagtataaagcctttgtttattacatagacatgcttatcatatattaaaaactgagggacaattgcatcccaactctcaaaa |
45646575 |
T |
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