View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15785_low_16 (Length: 265)
Name: NF15785_low_16
Description: NF15785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15785_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 6 - 249
Target Start/End: Complemental strand, 1342749 - 1342505
Alignment:
| Q |
6 |
tttaacaaattccatttacac--agcgggttcaacaagtgcgggaaatgaagaaaagtagcgaaaattgaaagcgcaatattcgattcattttcccgctt |
103 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |
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| T |
1342749 |
tttaacaaattccatttacactgagcgggttcaacaagtgcgggaaatgaagaaaagtagcgaaaattgtaagcgcaatatt-gattcattttcccgctt |
1342651 |
T |
|
| Q |
104 |
catatataaataatcgcttttttcttcaccttcttctctcttctcctaacaaaaaataagcgcttattctctcattcaccttaacaatgcctcaaaaacg |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1342650 |
catatataaataatcgcttttttcttcaccttcttctctcttctcctaacaaaaaataagcgcttattctctcattcaccttaacaatgcctcaaaaacg |
1342551 |
T |
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| Q |
204 |
cgttcgcaaatcttccaaacaagacgacattgttcctcattcttct |
249 |
Q |
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|||||||||||||||||| ||||||||| ||||||||||||||||| |
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| T |
1342550 |
cgttcgcaaatcttccaatcaagacgacgttgttcctcattcttct |
1342505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 130 - 249
Target Start/End: Complemental strand, 31944584 - 31944465
Alignment:
| Q |
130 |
caccttcttctctcttctcctaacaaaaaataagcgcttattctctcattcaccttaacaatgcctcaaaaacgcgttcgcaaatcttccaaacaagacg |
229 |
Q |
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||||||||||||||||||||||||||||||||||| |||||| |||| ||||||| || ||||||| ||||||||||||| |||||| |||||||||||| |
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| T |
31944584 |
caccttcttctctcttctcctaacaaaaaataagcacttattttctctttcacctcaataatgcctaaaaaacgcgttcgtaaatctcccaaacaagacg |
31944485 |
T |
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| Q |
230 |
acattgttcctcattcttct |
249 |
Q |
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|| | ||||||| ||||||| |
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| T |
31944484 |
acgtcgttcctcgttcttct |
31944465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 26 - 105
Target Start/End: Complemental strand, 31944735 - 31944659
Alignment:
| Q |
26 |
cagcgggttcaacaagtgcgggaaatgaagaaaagtagcgaaaattgaaagcgcaatattcgattcattttcccgcttca |
105 |
Q |
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||||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||| |
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| T |
31944735 |
cagcgggttcaacaagtgctggaaatgaa---aagtagcgaaaattaaaagcgcaatattcaattcattttcccgcttca |
31944659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 138 - 249
Target Start/End: Complemental strand, 9395071 - 9394960
Alignment:
| Q |
138 |
tctctcttctcctaacaaaaaataagcgcttattctctcattcaccttaacaatgcctcaaaaacgcgttcgcaaatcttccaaacaagacgacattgtt |
237 |
Q |
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|||||||||||||||||||||| ||| |||||| |||| ||||||| |||||||||| ||||||||||||| ||||||||||||||||||||| | ||| |
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| T |
9395071 |
tctctcttctcctaacaaaaaacaagtacttattttctccttcacctcaacaatgcctaaaaaacgcgttcgtaaatcttccaaacaagacgacgtcgtt |
9394972 |
T |
|
| Q |
238 |
cctcattcttct |
249 |
Q |
| |
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|||||||||||| |
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| T |
9394971 |
cctcattcttct |
9394960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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