View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15785_low_19 (Length: 236)
Name: NF15785_low_19
Description: NF15785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15785_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 28869998 - 28870218
Alignment:
| Q |
1 |
tgataaataatttccttttctaacccttagaagccctaattaactgtctacaaagaaaccaaggtcctttccttattagatattccaatccacttcatca |
100 |
Q |
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| T |
28869998 |
tgataaataatttccttttctaacccttagaagccctaattaactgtctacaaagaaaccaaggtcctttccttattagatattccaatccacttcatca |
28870097 |
T |
|
| Q |
101 |
agtatttagtataaaaattgaatctttcactgtgcaaatatcagtataaaaaactgtaaatgttatcaaacataccaaattactgctacatacacactac |
200 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
28870098 |
agtatttagtataaaaattgaatccttcactgtgcaaatatcagtataaaaacctgtaaatgttatcaaacataccaaattactgctacatcaacactac |
28870197 |
T |
|
| Q |
201 |
actaagtaacaacataaaaac |
221 |
Q |
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|||||| |||||||||||||| |
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| T |
28870198 |
actaagcaacaacataaaaac |
28870218 |
T |
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