View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15785_low_3 (Length: 600)
Name: NF15785_low_3
Description: NF15785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15785_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 519; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 14 - 585
Target Start/End: Complemental strand, 35060404 - 35059821
Alignment:
| Q |
14 |
caaaggacaacacactaggatttgaggtaaataaaaaagaaggtatgtcacgtggcgatagtgtgaagggcaatcctggtaattcaatggtagtttggtt |
113 |
Q |
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| T |
35060404 |
caaaagacaacacactaggatttgaggtaaataaaaaagaaggtatgtcacgtggcgatagtgtgaagggcaatcctggtaattcaatggtagtttggtt |
35060305 |
T |
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| Q |
114 |
ttggtt------------attgatatggttactataaccatgaaagtagtaatagagaatatcaaacactgtggcgggttcaatccagagtttagctgag |
201 |
Q |
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| T |
35060304 |
ttggttttggttttggttattgatatggttactataaccatgaaagtagtaatagagaatatcaaacactgtggcgggttcaatccagagtttagctgag |
35060205 |
T |
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| Q |
202 |
cggaggttgaaaccacgagcaactcgtggagcccaaggaatgattatggtgtagagtaagcaagtgaaaggtttggattcttgtttggcagagagtatga |
301 |
Q |
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| T |
35060204 |
cggaggttgaaaccacgagctactcgtggagcccaaggaatgattatggtgtagagtaagcaagtgaaaggtttggattcttgtttggcagagagtatga |
35060105 |
T |
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| Q |
302 |
gattggtgatgaagtcggagccacgggtgttgaactgtgaggtgtattggtggaaatcagcgtcggtgtttgtgatggcgatgaaaccgtcgtcgtagcc |
401 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
35060104 |
gattggtgatgaagtcggagccacgggtgttgaactgtgaggtgtattgatggaaatcagcgtcggtgtttgtgatggcgatgaaaccgtcgttgtagcc |
35060005 |
T |
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| Q |
402 |
atcggagaagggggttatggagaggttggagatggtggttatggatggattgaggaggattagacgacggtagaggtggagggtgataggaagagtgaca |
501 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |
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| T |
35060004 |
atcggagaagggggttatggagaggttggagatggtggttatggatggattgaggaggattaaacgacggtagaggtggagggtgatgggaagagtgaca |
35059905 |
T |
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| Q |
502 |
tgtgcacccattgatatgagtcgcttggcaaattgaagggctgggtttatgtggccttgagctgggtacgttaccagaaggatg |
585 |
Q |
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| T |
35059904 |
tgtgcacccattgatatgagtcgcttggcaaattgaagggctgggtttatgtggccttgagctgggtacgttaccagaaggatg |
35059821 |
T |
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