View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15785_low_5 (Length: 502)
Name: NF15785_low_5
Description: NF15785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15785_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 472; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 1 - 484
Target Start/End: Original strand, 5893849 - 5894332
Alignment:
| Q |
1 |
ccaatgttgttaccacatttatcatctaaagcttgcactgtgggaggctatgatgtgcctcaaaacaccatgttgatggtgaatgcttgggctattcata |
100 |
Q |
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|||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5893849 |
ccaatgttgttaccacatttatcaactaaagcttgcactgtaggaggctatgatgtgcctcaaaacaccatgttgatggtgaatgcttgggctattcata |
5893948 |
T |
|
| Q |
101 |
gagaccctaatttgtgggctgaccctatgagctttaagcccgagaggtttgaggatggtcatcaaggagacaaacatgggtttattccttttgggatggg |
200 |
Q |
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| T |
5893949 |
gagaccctaatttgtgggctgaccctatgagctttaagcccgagaggtttgaggatggtcatcaaggagacaaacatgggtttattccttttgggatggg |
5894048 |
T |
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| Q |
201 |
gaggagggcttgtcctgggtcgggcttagccctgagaactttgagcttgactttgggatctttgattcaatgctttgaatggaaaagtattggcaaggaa |
300 |
Q |
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| T |
5894049 |
gaggagggcttgtcctgggtcgggcttagccctgagaactttgagcttgactttgggatctttgattcaatgctttgaatggaaaaggattggcaaggaa |
5894148 |
T |
|
| Q |
301 |
ggagttgatatgactgaaggacgtggaactctgttgcctatggccattccattggaggcacaatgcaaagctcgtccaataatcaataagcttttctctt |
400 |
Q |
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| T |
5894149 |
ggagttgatatgactgaaggacgtggaactctgttgcctatggccattccattggaggcacaatgcaaagctcgtccaataatcaataagcttttctctt |
5894248 |
T |
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| Q |
401 |
aataattgtgtgtttgctaaagattcaaattgataagaaccttatgaataatgttgtagaagttgaaaaaatattatttggtgt |
484 |
Q |
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| T |
5894249 |
aataattgtgtgtttgctaaagattcaaattgataagaaccttatgaataatgttgtagaagttgaaaaaatattatttggtgt |
5894332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 61 - 153
Target Start/End: Original strand, 5886186 - 5886278
Alignment:
| Q |
61 |
caaaacaccatgttgatggtgaatgcttgggctattcatagagaccctaatttgtgggctgaccctatgagctttaagcccgagaggtttgag |
153 |
Q |
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|||||||| || ||||||||||||||||||| ||||||||||| || ||||||||| ||| |||| | |||||||| |||||||||||| |
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| T |
5886186 |
caaaacacaattttgatggtgaatgcttgggtcattcatagagatccaaatttgtggagtgatcctacttgttttaagccagagaggtttgag |
5886278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 79 - 111
Target Start/End: Complemental strand, 9400359 - 9400327
Alignment:
| Q |
79 |
gtgaatgcttgggctattcatagagaccctaat |
111 |
Q |
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| T |
9400359 |
gtgaatgcttgggctattcatagagactctaat |
9400327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 79 - 111
Target Start/End: Complemental strand, 20074121 - 20074089
Alignment:
| Q |
79 |
gtgaatgcttgggctattcatagagaccctaat |
111 |
Q |
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| T |
20074121 |
gtgaatgcttgggctattcatacagaccctaat |
20074089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 79 - 111
Target Start/End: Complemental strand, 9000250 - 9000218
Alignment:
| Q |
79 |
gtgaatgcttgggctattcatagagaccctaat |
111 |
Q |
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|||||||||||||||||||| |||||||||||| |
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| T |
9000250 |
gtgaatgcttgggctattcagagagaccctaat |
9000218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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