View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15785_low_6 (Length: 464)
Name: NF15785_low_6
Description: NF15785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15785_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 15 - 340
Target Start/End: Complemental strand, 32059580 - 32059253
Alignment:
| Q |
15 |
actttcaacctccaaatcccaccccaa-tacccatgccttcttaagtgagagttatccacaatttcttttacacacaaacgatatgcacttcttaccgaa |
113 |
Q |
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| T |
32059580 |
actttcaacctccaaattacactccaaatacccatgccttcttaagtgagagttatccacaatttcttttactcacaaacgatatgcacttcttaccgaa |
32059481 |
T |
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| Q |
114 |
taatatccattcttt-catgattccagtacaccaatctatcctcattcacttgcgggtacagcggtatatctaaaattctttgcgctgttccttctacaa |
212 |
Q |
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||||||||||||||| || ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32059480 |
taatatccattcttttcaggattccagtacaccaatttatcctcattcacttgtgggtacagcggtatatctaaaattctttgcgctgttccttctacaa |
32059381 |
T |
|
| Q |
213 |
aaatatgccacacaagctatttgttccatgtttttgtgtcttagtgaatcaagtgacccacaaaatatctttgtaaagccaaagctgccggactcacggg |
312 |
Q |
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| T |
32059380 |
aaatatgccgcacaagctctttgttccatgtttttgtgtcttagtgaatcaagtgacccacaaaatatctttgtaaagccaaagctgccggactcacggg |
32059281 |
T |
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| Q |
313 |
aggtgtactagagctagcacccaaccaa |
340 |
Q |
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||| |||||||||||||||||||||||| |
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| T |
32059280 |
aggcgtactagagctagcacccaaccaa |
32059253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 320 - 387
Target Start/End: Original strand, 32059188 - 32059255
Alignment:
| Q |
320 |
ctagagctagcacccaaccaaggctctcctatcataggaatattaaatccggctcctactatctattg |
387 |
Q |
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| T |
32059188 |
ctagagctagcacccaaccaaggctctcctatcataggaatattaaatccggatcctactatctattg |
32059255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 63 - 182
Target Start/End: Complemental strand, 39532814 - 39532697
Alignment:
| Q |
63 |
gagttatccacaatttcttttacacacaaacgatatgcacttcttaccgaataatatccattcttt-catgattccagtacaccaatctatcctcattca |
161 |
Q |
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||||||||||||||||| | || ||||| ||||| |||| | |||||||||||| |||||||||| | ||||||| ||| ||| |||||||| | | |
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| T |
39532814 |
gagttatccacaatttcctccacgcacaagcgatacgcacgttttaccgaataatgtccattcttttccggattcca---cactaatttatcctcagtta |
39532718 |
T |
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| Q |
162 |
cttgcgggtacagcggtatat |
182 |
Q |
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| T |
39532717 |
cttgcgggaacagcggtatat |
39532697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 127
Target Start/End: Complemental strand, 29206627 - 29206514
Alignment:
| Q |
14 |
cactttcaacctccaaatcccaccccaatacccatgccttcttaagtgagagttatccacaatttcttttacacacaaacgatatgcacttcttaccgaa |
113 |
Q |
| |
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|||||||||| ||||||| |||| |||||| ||| |||||| | ||| | |||| |||||| ||||| ||||| | |||||| |||||| ||||||| |
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| T |
29206627 |
cactttcaacttccaaattccactccaataaccactccttctcaggtgtgtattattcacaatatctttgacacaaagacgatacgcacttggtaccgaa |
29206528 |
T |
|
| Q |
114 |
taatatccattctt |
127 |
Q |
| |
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|||| |||||||| |
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| T |
29206527 |
taatgcccattctt |
29206514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 277 - 309
Target Start/End: Original strand, 3300423 - 3300455
Alignment:
| Q |
277 |
atatctttgtaaagccaaagctgccggactcac |
309 |
Q |
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| T |
3300423 |
atatctttgtaaagctaaagctgccggactcac |
3300455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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