View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15785_low_9 (Length: 391)
Name: NF15785_low_9
Description: NF15785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15785_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 348; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 19 - 378
Target Start/End: Original strand, 49271731 - 49272090
Alignment:
| Q |
19 |
gttcacctgcaagcctctcaattttgaacttgctaacaagatccccagctgtaccaccagtgctcacaaaccaaaacccagacccaacctttaaaagcct |
118 |
Q |
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| T |
49271731 |
gttcacctgcaagcctctcaatcttgaacttgctaacaagatccccagctgcaccaccagtgctcacaaaccaaaacccagacccaacctttaaaagcct |
49271830 |
T |
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| Q |
119 |
ccacacttttggttcattgcaaggactacccagaataggaatctcaatggtgaggtcagtgagagttggaatgtaatcaagacctgatgcagagaaatac |
218 |
Q |
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| T |
49271831 |
ccacacttttggttcattgcaaggactacccagaataggaatctcaatggtgaggtcagtgagagttggaatgtaatcaagacctgatgcagagaaatac |
49271930 |
T |
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| Q |
219 |
accggtgtgccgattgcatcagggttacggattacatcaagagggcatgttttgtttcttgtatgtcctaatgtaatgcctccattgtcggcccaaagtg |
318 |
Q |
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| T |
49271931 |
accggtgtgccgattgcatcagggttacggattacatcaagagggcatgttttgtttcttgtgtgtcctaatgtaatgcctccattgtcggcccaaagtg |
49272030 |
T |
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| Q |
319 |
gaaatacgtagtaaccttcacctggtttaagagggttaccttgtttgtctactactgcct |
378 |
Q |
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| T |
49272031 |
gaaatacgtagtaaccttcacctggtttaagagggttaccttgtttgtctactactgcct |
49272090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 118 - 378
Target Start/End: Original strand, 49277753 - 49278013
Alignment:
| Q |
118 |
tccacacttttggttcattgcaaggactacccagaataggaatctcaatggtgaggtcagtgagagttggaatgtaatcaagacctgatgcagagaaata |
217 |
Q |
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| T |
49277753 |
tccacacttttctctcactgcaaggactacccaatattggaatctcaacggtgagatcagtgagagttggaatgtaatcatgttcatattcatagaaata |
49277852 |
T |
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| Q |
218 |
caccggtgtgccgattgcatcagggttacggattacatcaagagggcatgttttgtttcttgtatgtcctaatgtaatgcctccattgtcggcccaaagt |
317 |
Q |
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| T |
49277853 |
aactggcgagccaatggcttcagggttacggataacatcaagagggcatgttttgtttcttgtttgtcctaatgttatgcctccattgtcagcccaaagt |
49277952 |
T |
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| Q |
318 |
ggaaatacgtagtaaccttcacctggtttaagagggttaccttgtttgtctactactgcct |
378 |
Q |
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| T |
49277953 |
ggaaatacgtagtaaccttcacctggtttaagagggttaccttgtttgtctactactgcct |
49278013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 28 - 280
Target Start/End: Original strand, 49269292 - 49269544
Alignment:
| Q |
28 |
caagcctctcaattttgaacttgctaacaagatccccagctgtaccaccagtgctcacaaaccaaaacccagacccaacctttaaaagcctccacacttt |
127 |
Q |
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| T |
49269292 |
caagcttctcaatcttgaacttactaacaacatccccagctacaccaccagtgctcaaaaaccagaacccagatccctcttttgaaagcttcaacacttt |
49269391 |
T |
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| Q |
128 |
tggttcattgcaaggactacccagaataggaatctcaatggtgaggtcagtgagagttggaatgtaatcaagacctgatgcagagaaatacaccggtgtg |
227 |
Q |
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|| | ||||| | ||||| | || |||| | ||||| || ||||| |||||||||||| | || ||||| ||||||||| ||||| || | | |
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| T |
49269392 |
tgactggttgcatgaactactcctaaatcgaattttaatggaaagatcagtttgagttggaatgtgtttaaaacctggtgcagagaagtacactggcgag |
49269491 |
T |
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| Q |
228 |
ccgattgcatcagggttacggattacatcaagagggcatgttttgtttcttgt |
280 |
Q |
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| T |
49269492 |
ccgagttctttagggttacgaattacatcaagaggacatgttttgtttcttgt |
49269544 |
T |
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