View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15786_high_1 (Length: 564)
Name: NF15786_high_1
Description: NF15786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15786_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 155; Significance: 5e-82; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 343 - 537
Target Start/End: Complemental strand, 11452079 - 11451886
Alignment:
| Q |
343 |
caacttaagattaaaggctgtttggtatcagacacctacacgacaccgatagatgtagtgattgtttgtttccatgatgatgtccatctcattgaccaaa |
442 |
Q |
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| T |
11452079 |
caacttaagattaaaggctgtttggtatcaaacacctacacgacaccgatagatgtagtgattgtttgtttccatgacggggtc-ataccattgaccaaa |
11451981 |
T |
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| Q |
443 |
aactaggatttatagctttttaaaatcacgatggagacacattgacgactcttgatattgtggataaccgcggtcaaattcgatgtagctgatga |
537 |
Q |
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| T |
11451980 |
aactaggatttatagccttttaaaatcacggtggagacacattgacgactcttgatattgtggataaccgcggtcaaattcgatgtagctgatga |
11451886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 25 - 135
Target Start/End: Complemental strand, 11452396 - 11452286
Alignment:
| Q |
25 |
catcatcaaagcctacgcacttcctcttcttctcttctctgctgccatgttctaccagctttttcttattcccaatgcttttcctccttctcattatgat |
124 |
Q |
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| T |
11452396 |
catcatcaaagcctacgcacttcctcttcttctcttctctgctgccatgttctaccagctttttcttattcccaatgcttttcctccttctcattatgat |
11452297 |
T |
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| Q |
125 |
ggtaactagta |
135 |
Q |
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| T |
11452296 |
ggtaactagta |
11452286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 198 - 276
Target Start/End: Complemental strand, 11452224 - 11452146
Alignment:
| Q |
198 |
aatgcagttctgagaattaagatgtatagttcgattgatgaagtgaaggaggcttatgtcaatcttgaatctaaatggt |
276 |
Q |
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| T |
11452224 |
aatgcagttctgagaattaagatgtatagttcgattgatgaagtgaaggaagcttatgtcaatcttgaatctaaatggt |
11452146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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