View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15786_high_3 (Length: 411)
Name: NF15786_high_3
Description: NF15786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15786_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 22 - 394
Target Start/End: Original strand, 23004500 - 23004877
Alignment:
| Q |
22 |
acatcatcagatagcttaagaattcttgtttgatggctagacgtgtattttttaataaatcaatcatgttagttggatgctcgtagtctgtgtcagaaag |
121 |
Q |
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| T |
23004500 |
acatcatcagatagcttaagaattcttgtttgatggctagacgtgtattttttaataaatcaatcatgttagttggatgctcgtagtctgtgtcagaaag |
23004599 |
T |
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| Q |
122 |
tgagtataaacattagtagttgtgtgcacattatgtgttatgcatcatctttgacacagtatggtgaaatagcga-----nnnnnnnnctagttttactg |
216 |
Q |
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|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |
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| T |
23004600 |
tgagtataaacaatagtatttgtgtgcacattatgtgttatgcatcatctttgacacagtatggtgaaatagcgatttttctttctttctaattttactg |
23004699 |
T |
|
| Q |
217 |
aagttcaagtctcctgcatctcgataccggtatacagttgacaaagtattatcgacataccaatgtgccataattatttcagcatcagcctatacttttt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
23004700 |
aagttcaagtctcctgcatctcgataccggtatacacttgacaaagtattatcgacataccagtgtgccataattatttcagcatcagcctatacttttt |
23004799 |
T |
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| Q |
317 |
tcctgaactttttagcatttaacaggaggtggataaatcatttaagttatggaggtcctcagaaggtgatgatgtcca |
394 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
23004800 |
tcctgaaatttttagcatttaacaggaggtggataaatcatttaagttatggaggtcctcagaaggtgaagctgtcca |
23004877 |
T |
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