View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15786_high_9 (Length: 347)
Name: NF15786_high_9
Description: NF15786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15786_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 16 - 346
Target Start/End: Complemental strand, 36938459 - 36938129
Alignment:
| Q |
16 |
gggttgtgtaagaagtactgattgaattaacatcaatccccacatgatcatatgtaggatcccatgtattgacaaatgtatcaaattccacagccacaaa |
115 |
Q |
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| T |
36938459 |
gggttgtgtaagaagtactgattgaattaacatcaatccccacatgatcatatgtaggatcccatgtattgacaaatgtatcaaattccacagccacaaa |
36938360 |
T |
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| Q |
116 |
gggattttcttttgtgtaatttggagtagctaattgaacgctgctcatgagaccaataccacttccatctcttggaacaggtagtggaaaattggggtgt |
215 |
Q |
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| T |
36938359 |
gggattttcttttgtgtaatttggagtagctaattgaacgctgctcatgagaccaataccacttccatctcttggaacaggtagtggaaaattggggtgt |
36938260 |
T |
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| Q |
216 |
gccaaatagaaggtgattccatctgaatgatcggttttgttgagggtgttgatagtaaatgagaaacgagtagtaaaatccgtgacttcactcgtgttta |
315 |
Q |
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| T |
36938259 |
gccaaatagaaggtgattccatctgaatgatcggttttgttgagggtgttgatagtaaatgagaaacgagtagtaaaatccgtgacttcactcgtgttta |
36938160 |
T |
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| Q |
316 |
tgttccaaagatgaaatagttttgaatatgt |
346 |
Q |
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| T |
36938159 |
tgttccaaagatgaaatagttttgaatatgt |
36938129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 33 - 346
Target Start/End: Complemental strand, 36948686 - 36948376
Alignment:
| Q |
33 |
ctgattgaattaacatcaatccccacatgatcatatgtaggatcccatgtattgacaaatgtatcaaattccacagccacaaagggattttcttttgtgt |
132 |
Q |
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| T |
36948686 |
ctgatagaattaacatcaatcccaacatgatcatatttaggatcccagtcattaacaaatgtatcaaattccacagctacaaatggattttcttttgtgt |
36948587 |
T |
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| Q |
133 |
aatttggagtagctaattgaacgctgctcatgagaccaataccacttccatctctt-ggaacaggtagtggaaaattggggtgtgccaaatagaaggtga |
231 |
Q |
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| T |
36948586 |
aatttggattactcaattgaacacggctcgctagaccgataccacttccatctatttgggaca--tag--gaaaattggggcgtgccaaatagaaggtga |
36948491 |
T |
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| Q |
232 |
ttccatctgaatgatcggttttgttgagggtgttgatagtaaatgagaaacgagtagtaaaatccgtgacttcactcgtgtttatgttccaaagatgaaa |
331 |
Q |
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| T |
36948490 |
tgccatctccatgataacttttgttgggggtgttgatagaaaatgagaaacgagtagtgaaatctgtgacttcacttgtgttaatgttccaaagatgaaa |
36948391 |
T |
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| Q |
332 |
tagttttgaatatgt |
346 |
Q |
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| T |
36948390 |
caattttgaatatgt |
36948376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 33 - 346
Target Start/End: Complemental strand, 36958820 - 36958510
Alignment:
| Q |
33 |
ctgattgaattaacatcaatccccacatgatcatatgtaggatcccatgtattgacaaatgtatcaaattccacagccacaaagggattttcttttgtgt |
132 |
Q |
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||||| ||||||||||||||||| ||||||||||| ||||||||||| ||| ||||||||||||||||||||||| ||||| |||||||||||||||| |
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| T |
36958820 |
ctgatagaattaacatcaatcccaacatgatcatagttaggatcccattcattaacaaatgtatcaaattccacagctacaaatggattttcttttgtgt |
36958721 |
T |
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| Q |
133 |
aatttggagtagctaattgaacgctgctcatgagaccaataccacttccatctctt-ggaacaggtagtggaaaattggggtgtgccaaatagaaggtga |
231 |
Q |
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| T |
36958720 |
aatctggattactcaattgaacaaggctcgcaagaccgattccgcctccatatatttgggacatg----ggaaaattggggtgtgccaaatagaaggtca |
36958625 |
T |
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| Q |
232 |
ttccatctgaatgatcggttttgttgagggtgttgatagtaaatgagaaacgagtagtaaaatccgtgacttcactcgtgtttatgttccaaagatgaaa |
331 |
Q |
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| T |
36958624 |
tgccatctgcatgatgggttttgttgggggtgttgatagtaaatgagaaacgagtattgaaatctgtgacttcgcttgtttttatgtcccaaagatgaaa |
36958525 |
T |
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| Q |
332 |
tagttttgaatatgt |
346 |
Q |
| |
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| |||||||||||| |
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| T |
36958524 |
caattttgaatatgt |
36958510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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