View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15786_low_2 (Length: 236)
Name: NF15786_low_2
Description: NF15786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15786_low_2 |
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| [»] chr8 (1 HSPs) |
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| [»] scaffold1583 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 16 - 236
Target Start/End: Original strand, 12921650 - 12921870
Alignment:
| Q |
16 |
ccaccaccttcaccgtggtcaccttctcgtcctccaccacctactccacctgacctaaacaaaagaccaccatctccaaaatctccaccactctcaccgc |
115 |
Q |
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| T |
12921650 |
ccaccgccttcaccgtggtcaccttctcctcctccaccaccttctccacctgacctaaacaaaacaccaccattttcaaactctccaccactctcaccac |
12921749 |
T |
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| Q |
116 |
cgccattaaagacatctctgtatcctcttctaactcaacaacaaccaaacacttcagaagatgaaccaccactaaacatcatgcctctagacatgatttc |
215 |
Q |
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| T |
12921750 |
cgccatcagagacatctctgtctcctcttctaactcaacaacaaccaaactctccagaagatgaaccaccattaaacatcatgcctctagacatgattaa |
12921849 |
T |
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| Q |
216 |
taaacccttgtttcaagcttc |
236 |
Q |
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| T |
12921850 |
taaacccttgtttcaagcttc |
12921870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1583 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: scaffold1583
Description:
Target: scaffold1583; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 11 - 236
Target Start/End: Original strand, 688 - 913
Alignment:
| Q |
11 |
catcaccaccaccttcaccgtggtcaccttctcgtcctccaccacctactccacctgacctaaacaaaagaccaccatctccaaaatctccaccactctc |
110 |
Q |
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| T |
688 |
catcgccaccgccttcaccatggtcaccttctcctcctccaccaccttctccaccagacctaaacaaaacaccaccatctccaaactcgccaccactctc |
787 |
T |
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| Q |
111 |
accgccgccattaaagacatctctgtatcctcttctaactcaacaacaaccaaacacttcagaagatgaaccaccactaaacatcatgcctctagacatg |
210 |
Q |
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| T |
788 |
accgccgccatcagattcatctctgtctcctcttctaactcaacaccaaccaaacactccagaagatgaaccaccactaaacatcatgcctctagacatg |
887 |
T |
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| Q |
211 |
atttctaaacccttgtttcaagcttc |
236 |
Q |
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| T |
888 |
attagtaaacccttgtttcaagcttc |
913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 11 - 236
Target Start/End: Complemental strand, 14275999 - 14275774
Alignment:
| Q |
11 |
catcaccaccaccttcaccgtggtcaccttctcgtcctccaccacctactccacctgacctaaacaaaagaccaccatctccaaaatctccaccactctc |
110 |
Q |
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| T |
14275999 |
catcgccaccgccttcaccatggtcactgtctcctcctccaccaccttctccacctgacctaaacaaaacaccgccatctccaaactctccaccactctc |
14275900 |
T |
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| Q |
111 |
accgccgccattaaagacatctctgtatcctcttctaactcaacaacaaccaaacacttcagaagatgaaccaccactaaacatcatgcctctagacatg |
210 |
Q |
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| T |
14275899 |
accgccgccatcagattcatctctgtctcctcttctaactcaacaccaaccaaacactccagaagatgaaccaccactaaacatcatgcctctagacatg |
14275800 |
T |
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| Q |
211 |
atttctaaacccttgtttcaagcttc |
236 |
Q |
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| T |
14275799 |
attagtaaacccttgtttcaagcttc |
14275774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 11 - 236
Target Start/End: Complemental strand, 14638721 - 14638496
Alignment:
| Q |
11 |
catcaccaccaccttcaccgtggtcaccttctcgtcctccaccacctactccacctgacctaaacaaaagaccaccatctccaaaatctccaccactctc |
110 |
Q |
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| T |
14638721 |
catcgccaccaccttcaccacggtcacattctcctcctccaccaccttctccaccagacctgaacaaaacaccaccatctccaaactcgccaccactctc |
14638622 |
T |
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| Q |
111 |
accgccgccattaaagacatctctgtatcctcttctaactcaacaacaaccaaacacttcagaagatgaaccaccactaaacatcatgcctctagacatg |
210 |
Q |
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| T |
14638621 |
accgccaccatcagattcatctctgtctcctcttctaactcaacaacaaccaaacactccagaagatgaaccaccactaaacatcatgcctctagacatg |
14638522 |
T |
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| Q |
211 |
atttctaaacccttgtttcaagcttc |
236 |
Q |
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| T |
14638521 |
attagtaaacccttgtttcaagcttc |
14638496 |
T |
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