View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15787_high_2 (Length: 529)
Name: NF15787_high_2
Description: NF15787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15787_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 427; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 19 - 517
Target Start/End: Complemental strand, 15595662 - 15595165
Alignment:
| Q |
19 |
agagatcacatctcgtttcaatccaccctaaagattctattttccacttactgttgcacttgtgttttcttagtccatccaacttactgcctcatgataa |
118 |
Q |
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| T |
15595662 |
agagatcacctctcgtttcaatccaccctaaagattctattttccacttactgttgcacttgtgttttcttagtccacccaacttactacctcatgaaaa |
15595563 |
T |
|
| Q |
119 |
atactggagaaatctgattccatctcttatccttgggcatgcattcgaaattaccttgattcgtgaaatgtccttccatcacttaaatattcattcatcc |
218 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15595562 |
atactagagaaatctgattccatctcttatccttgggcatgcattcgaaattaccttgattcgtgaaatgtccttccatcacttaaatattcattcatcc |
15595463 |
T |
|
| Q |
219 |
tgactttcatgctccataacattccacttcctgactcataggtctgacacttaagatttgggaggtgcggtcaatctgacagagtttggctaacttatgt |
318 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||| |
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| T |
15595462 |
tgactttcatgctccataacattccacttcttgactcataggtctgacacttaagattcgggaggtgcggtcactctgacagagtttggctaac-tatgt |
15595364 |
T |
|
| Q |
319 |
tgcttacttagttacctcataagaagttaacttcgtatacctcccaagagtttacttatcccctagttgcttaaattaacataccagtcatcagaatgtc |
418 |
Q |
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| T |
15595363 |
tgcttacttagttacctcataagaagttaacttcgtataccacccaagagtttacttatcacctagttgcttaacttaacgtactagtcatcagaatgtc |
15595264 |
T |
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| Q |
419 |
atccattctaagcgttccaagtccttagttccatacataatccacttttttctgagtgcttactaattctatcccatatatgttgacttcctcatccta |
517 |
Q |
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| T |
15595263 |
atccattctaagcgttcaaagtccttagttccatacataatccactgttttctgagtgcttactaactctatcccatatatgttgacttcctcatccta |
15595165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 190 - 340
Target Start/End: Complemental strand, 14734728 - 14734580
Alignment:
| Q |
190 |
ccttccatcacttaaatattcattcatcctgactttcatgctccataacattccacttcctgactcataggtctgacacttaagatttgggaggtgcggt |
289 |
Q |
| |
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|||||||| ||||||||| |||| |||||| || |||||| | || ||||| ||||| | | | ||| || |||||||||||||| |||||| ||| | |
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| T |
14734728 |
ccttccattacttaaatactcatccatcctaaccttcatgttgtatgacatttcactttccgtcctataagtttgacacttaagattcgggaggcgcgat |
14734629 |
T |
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| Q |
290 |
caatctgacagagtttggctaacttatgttgcttacttagttacctcataa |
340 |
Q |
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| T |
14734628 |
c--tctgacagagtctgactaacttacattgcttacttaattaccccataa |
14734580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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