View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15787_low_1 (Length: 692)
Name: NF15787_low_1
Description: NF15787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15787_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 623; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 623; E-Value: 0
Query Start/End: Original strand, 1 - 675
Target Start/End: Original strand, 32084656 - 32085330
Alignment:
| Q |
1 |
gggtatttcaagggaggcaaatttgtggaaaatgtcgtcaattttggaggctgtaagagtttgggtttcaccaagggtggattgattggtagtgagtttg |
100 |
Q |
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||||||||||||||| || |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32084656 |
gggtatttcaagggacgctaatttgtggagaatgtcgtcaattttggaggccgtaagagtttgggtttcaccaagggtggattgattggtagtgagtttg |
32084755 |
T |
|
| Q |
101 |
ctaacggcttcttccattttattagcggtggattttgaacgagtagtttccagattagctcgatgaaaataccgaagtattaggaactgagtaaatttgc |
200 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
32084756 |
ctaatggcttcttccattttattagcggtggattttgaacgagtagtttccagattagctcgatgaaaataccaaagtattaggaactgagtaaatttgc |
32084855 |
T |
|
| Q |
201 |
tatagctagagggctaatataacctcctaagaaggaaatagataatgagattttaagtcttgcttgatttgaaaatgctggaatcacatcaatatattag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32084856 |
tatagctagagggctaatataacctcctaagaaggaaatagataatgagattttaagtcttgcttgatttgaaaatgctggaatcacatcaatatattag |
32084955 |
T |
|
| Q |
301 |
gaaatgcaaaggtgtggctttcttatagatgatttgacataatccctaaagtactttggagtcatgatctttcttttaggcatctcatttggcctctctt |
400 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
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| T |
32084956 |
gaaatgcaaaggtgtggctttcttatagatgatttgacataatccctaaagtactttggagacatgatctttcttttaggcatctcatgtggcctctctt |
32085055 |
T |
|
| Q |
401 |
gtgtctgaccttactctttgcttccagtccatgtcttatcatatttgcttcccatcaacatcatattgttttgtcgatgtgtttgacaggggaagcaaga |
500 |
Q |
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| T |
32085056 |
gtgtctggccttactctttgcttccagtctatgtcttatcatatttgctttccatcaacatcatattgttttgtcgatgtgtttgacaggggaatcaaga |
32085155 |
T |
|
| Q |
501 |
gaattaattctttcaaaaactgtgatttgcttgtcaccctcgtgaagggaaagtcttgggacttattgaagcacttgattgagccaacgatctttcaatt |
600 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
32085156 |
gaattaattctttcaaaaactgtgatttgcttgtcaccctcgtgaagggaaagtcttgggacttattgaagcacttgattgacccaacgatctttcaatt |
32085255 |
T |
|
| Q |
601 |
cacaccgcagtcttagagtttgatgcaaaaatcgacttgaattgtactaatactgtgtttggtaacccaacatgt |
675 |
Q |
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| T |
32085256 |
cacaccgcagtcttagagtttgatgcaaaaatcgacttgaattgtactaatactgtgtttggtaacccaacatgt |
32085330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 32086121 - 32086411
Alignment:
| Q |
1 |
gggtatttcaagggaggcaaatttgtggaaaatgtcgtcaattttggaggctgtaagagtttgggtttcaccaagggtggattgattggtagtgagtttg |
100 |
Q |
| |
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|||||| ||||||||||| || ||||||| |||||| |||||| |||||| | ||||||||| ||||| ||||||| |||||| ||| |||||||| |
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| T |
32086121 |
gggtatgtcaagggaggctaacttgtggagaatgtcatcaattagggaggccgggagagtttggatttcaacaagggtaaattgatcagtaatgagtttg |
32086220 |
T |
|
| Q |
101 |
ctaacggcttcttccattttattagcggtggattttgaacgagtagtttccagattagctcgatgaaaataccgaagtattaggaactgagtaaatttgc |
200 |
Q |
| |
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|||| ||||||||||||||||| || |||| ||| |||| ||||||| ||||||| ||||||||| ||| |||| |||||||||| |||||||||| |
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| T |
32086221 |
ctaatggcttcttccattttatcggctgtggctttcgaacatgtagtttttggattagcccgatgaaaacaccaaagtgttaggaactgggtaaatttgc |
32086320 |
T |
|
| Q |
201 |
tatagctagagggctaatataacctcctaagaaggaaatagataatgagattttaagtcttgcttgatttgaaaatgctggaatcacatcaat |
293 |
Q |
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|||| | ||| ||| |||||||||||||||||| ||||||||| |||| | |||| |||||||| ||||||||||||| || ||||| |
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| T |
32086321 |
aatagttcaaggacta--gcaacctcctaagaaggaaaaagataatgaaatttagattctttcttgatttcaaaatgctggaattacttcaat |
32086411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 439 - 665
Target Start/End: Original strand, 32086848 - 32087082
Alignment:
| Q |
439 |
tcatatttgcttcccatcaacatcatattgttttgtcgatgtgtttgacaggggaagcaagagaattaattctttcaaaaac--tgtgatttgcttgtc- |
535 |
Q |
| |
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|||||||| ||||| |||||||| |||||||||||||||||||||||| |||||||| | || ||| ||||||| |||||| |||||||| ||| || |
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| T |
32086848 |
tcatattttcttccaatcaacattatattgttttgtcgatgtgtttgagaggggaagtaggataatcaattcttgtaaaaactatgtgattttcttatca |
32086947 |
T |
|
| Q |
536 |
-----accctcgtgaagggaaagtcttgggacttattgaagcacttgattgagccaacgatctttcaattcacaccgcagtcttagagtttgatgcaaaa |
630 |
Q |
| |
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| |||||||||||| ||| ||||||||| |||||| ||||| |||| ||||| || ||| | |||||| | | |||| |||||| || ||||| |
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| T |
32086948 |
agtcaaacctcgtgaaggggaagcattgggacttcttgaagaacttggttgaaccaacaatattttagttcacatcataatctttgagtttaatacaaaa |
32087047 |
T |
|
| Q |
631 |
atcgacttgaattgtactaatactgtgtttggtaa |
665 |
Q |
| |
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||| | || |||||||||||| |||||||||||| |
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| T |
32087048 |
atcaatatggattgtactaataatgtgtttggtaa |
32087082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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