View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15787_low_4 (Length: 472)

Name: NF15787_low_4
Description: NF15787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15787_low_4
NF15787_low_4
[»] scaffold0083 (2 HSPs)
scaffold0083 (49-359)||(54024-54334)
scaffold0083 (353-384)||(53961-53992)
[»] chr3 (20 HSPs)
chr3 (49-359)||(9980803-9981113)
chr3 (1-359)||(10360144-10360512)
chr3 (5-259)||(10035383-10035637)
chr3 (3-149)||(10584248-10584395)
chr3 (7-149)||(10130296-10130438)
chr3 (7-123)||(10264077-10264193)
chr3 (169-246)||(10584429-10584506)
chr3 (169-259)||(10130472-10130562)
chr3 (387-455)||(10591733-10591802)
chr3 (169-269)||(10264427-10264530)
chr3 (169-234)||(10372397-10372462)
chr3 (306-359)||(10584533-10584586)
chr3 (353-394)||(10584618-10584659)
chr3 (174-279)||(10430267-10430367)
chr3 (77-122)||(10430545-10430591)
chr3 (353-384)||(9981145-9981176)
chr3 (353-384)||(10360081-10360112)
chr3 (308-345)||(10035653-10035690)
chr3 (7-48)||(10430599-10430640)
chr3 (53-121)||(10504200-10504267)
[»] chr2 (1 HSPs)
chr2 (169-263)||(26910551-26910640)


Alignment Details
Target: scaffold0083 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 49 - 359
Target Start/End: Complemental strand, 54334 - 54024
Alignment:
Q  49 ttgatatataactacataagtcatgccggaaaactggtttcttatttatttttgggcttataaaactatctttggaaaaagctgtaactgctacattaat 148  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54334 ttgatatataactacataagtcatgccggaaaactggtttcttatttatttttgggcttataaaactatctttggaaaaagctgtaactgctacattaat 54235  T
Q  149 cagctcatttggtcaattgaagctaatcaaaggaaaatgcttatttcaacttttcaggagatcaaaggcctagctatgtggatgataatctgctcacttg 248  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54234 cagctcatttggtcaattgaagctaatcaaaggaaaatgcttatttcatcttttcaggagatcaaaggcctagctatgtggatgataatctgctcacttg 54135  T
Q  249 atgaattgaagaaaactgcttctttgattttttatgaggaattgaagactcagcggcttccattgattgccacaagatttaatttacttagctgctaata 348  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  54134 atgaattgaagaaaactgcttctttgattttttatgaggaattgaagactcagcggcatccattgattgccacaagatttaatttacttagctgctaata 54035  T
Q  349 gtgagtttgta 359  Q
    || ||||||||    
T  54034 gtcagtttgta 54024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 353 - 384
Target Start/End: Complemental strand, 53992 - 53961
Alignment:
Q  353 gtttgtaatattcttaatttgtaacatttttt 384  Q
    ||||||||||||||||||||||||||||||||    
T  53992 gtttgtaatattcttaatttgtaacatttttt 53961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 299; Significance: 1e-168; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 49 - 359
Target Start/End: Original strand, 9980803 - 9981113
Alignment:
Q  49 ttgatatataactacataagtcatgccggaaaactggtttcttatttatttttgggcttataaaactatctttggaaaaagctgtaactgctacattaat 148  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9980803 ttgatatataactacataagtcatgccggaaaactggtttcttatttatttttgggcttataaaactatctttggaaaaagctgtaactgctacattaat 9980902  T
Q  149 cagctcatttggtcaattgaagctaatcaaaggaaaatgcttatttcaacttttcaggagatcaaaggcctagctatgtggatgataatctgctcacttg 248  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9980903 cagctcatttggtcaattgaagctaatcaaaggaaaatgcttatttcatcttttcaggagatcaaaggcctagctatgtggatgataatctgctcacttg 9981002  T
Q  249 atgaattgaagaaaactgcttctttgattttttatgaggaattgaagactcagcggcttccattgattgccacaagatttaatttacttagctgctaata 348  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  9981003 atgaattgaagaaaactgcttctttgattttttatgaggaattgaagactcagcggcatccattgattgccacaagatttaatttacttagctgctaata 9981102  T
Q  349 gtgagtttgta 359  Q
    || ||||||||    
T  9981103 gtcagtttgta 9981113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 359
Target Start/End: Complemental strand, 10360512 - 10360144
Alignment:
Q  1 agaatattttatttaatttccagaatcaattaatgtagctcgggtagtttgatatataactacataagtcatgccggaaaactggtttcttatttatttt 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10360512 agaatattttatttgatttccagaatcaattaatgtagctcgggtagtttgatatataactacataagtcatgccggaaaactggtttcttatttatttt 10360413  T
Q  101 tgggcttataaaactatctttggaaaaagctgtaactgctacattaa--tcagctc----atttggtcaat--------tgaagctaatcaaaggaaaat 186  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||||  ||| |      | |||  ||||        || ||||||||||||||||||    
T  10360412 tgggcttataaaactatctttggaaaaacctgtaactgctgcattaatctcaacaataaaaattgaacaatcatgtctttggagctaatcaaaggaaaat 10360313  T
Q  187 gcttatttcaacttttcaggagatcaaaggcctagctatgtggatgataatctgctcacttgatgaattgaagaaaactgcttctttgattttttatgag 286  Q
    ||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10360312 gcttatttcaacttttcaggagatcaaaggccta----tgtggatgataatctgctcacttgatgaattgaagaaaactgcttctttgattttttatgag 10360217  T
Q  287 gaattgaagactcagcggcttccattgattgccacaagatttaatttacttagctgctaatagtgagtttgta 359  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  10360216 gaattgaagactcagcagcttccattgattgccacaagatttaatttacttagctgctaatagtcagtttgta 10360144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 5 - 259
Target Start/End: Original strand, 10035383 - 10035637
Alignment:
Q  5 tattttatttaatttccagaatcaattaatgtagctcgggtagtttgatatataactacataagtcatgccggaaaactggtttcttatttatttttggg 104  Q
    |||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10035383 tattttattttatttccagaatcaattaatgtagctcgggcagtatgatatataactacataagtcatgccggaaaactggtttcttatttatttttggg 10035482  T
Q  105 cttataaaactatctttggaaaaagctgtaactgctacattaatcagctcatttggtcaattgaagctaatcaaaggaaaatgcttatttcaacttttca 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  10035483 cttataaaactatctttggaaaaagctgtaactgctacattaatcagctcatttggtcaattgaagctaatcaaaggaaaatgcttatttcatcttttca 10035582  T
Q  205 ggagatcaaaggcctagctatgtggatgataatctgctcacttgatgaattgaag 259  Q
    |||||||||||||||||||||||||||||||||| ||||| ||  ||||||||||    
T  10035583 ggagatcaaaggcctagctatgtggatgataatcagctcatttcgtgaattgaag 10035637  T

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Target: chr3; HSP #4
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 3 - 149
Target Start/End: Original strand, 10584248 - 10584395
Alignment:
Q  3 aatattttattt-aatttccagaatcaattaatgtagctcgggtagtttgatatataactacataagtcatgccggaaaactggtttcttatttattttt 101  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10584248 aatattttattttaatttccagaatcaattaatgtagctcgggtagtttgatatataactacataagtcatgccggaaaactggtttcttatttattttt 10584347  T
Q  102 gggcttataaaactatctttggaaaaagctgtaactgctacattaatc 149  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  10584348 gggcttataaaactatctttggaaaaagctgtaactgctacattaatc 10584395  T

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Target: chr3; HSP #5
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 7 - 149
Target Start/End: Original strand, 10130296 - 10130438
Alignment:
Q  7 ttttatttaatttccagaatcaattaatgtagctcgggtagtttgatatataactacataagtcatgccggaaaactggtttcttatttatttttgggct 106  Q
    |||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10130296 ttttattttatttctagaatcaattaatgtagctcgggcagtttgatatataactacataagtcatgccggaaaactggtttcttatttatttttgggct 10130395  T
Q  107 tataaaactatctttggaaaaagctgtaactgctacattaatc 149  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  10130396 tataaaactatctttggaaaaagctgtaactgctacattaatc 10130438  T

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Target: chr3; HSP #6
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 7 - 123
Target Start/End: Original strand, 10264077 - 10264193
Alignment:
Q  7 ttttatttaatttccagaatcaattaatgtagctcgggtagtttgatatataactacataagtcatgccggaaaactggtttcttatttatttttgggct 106  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||  ||||||||||||||||||| |||||||||||    
T  10264077 tttttttttatttccagaatcaattaatgtagctcgggtagtttgatatagaactacataagtcttgttggaaaactggtttcttattaatttttgggct 10264176  T
Q  107 tataaaactatctttgg 123  Q
    |||||||| ||||||||    
T  10264177 tataaaaccatctttgg 10264193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 169 - 246
Target Start/End: Original strand, 10584429 - 10584506
Alignment:
Q  169 agctaatcaaaggaaaatgcttatttcaacttttcaggagatcaaaggcctagctatgtggatgataatctgctcact 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10584429 agctaatcaaaggaaaatgcttatttcaacttttcaggagatcaaaggcctagctatgtggatgataatctgctcact 10584506  T

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Target: chr3; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 169 - 259
Target Start/End: Original strand, 10130472 - 10130562
Alignment:
Q  169 agctaatcaaaggaaaatgcttatttcaacttttcaggagatcaaaggcctagctatgtggatgataatctgctcacttgatgaattgaag 259  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||  ||||| ||| ||||||||||    
T  10130472 agctaatcaaaggaaaatgcttatttcatcttttcaggagatcaaaggcccagctatgtggatgataattagctcatttggtgaattgaag 10130562  T

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Target: chr3; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 387 - 455
Target Start/End: Original strand, 10591733 - 10591802
Alignment:
Q  387 caatttataacatattctttagcatatattcttaatttgtacaatgcagta-ggtttatatgcaatttat 455  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  10591733 caatttataacatattctttagcatatattcttaatttgtacaatgcagtagggtttatatgcaatttat 10591802  T

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Target: chr3; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 169 - 269
Target Start/End: Original strand, 10264427 - 10264530
Alignment:
Q  169 agctaatcaaaggaaaatgcttatttcaacttttcaggagatcaaaggcctag---ctatgtggatgataatctgctcacttgatgaattgaagaaaact 265  Q
    |||||||||||||||||||||||||||| |||||||| |||||||||  | |    ||||||||||||||||| |||||||||||||||||||||||| |    
T  10264427 agctaatcaaaggaaaatgcttatttcatcttttcagaagatcaaagttcaaaggcctatgtggatgataatcagctcacttgatgaattgaagaaaaat 10264526  T
Q  266 gctt 269  Q
    ||||    
T  10264527 gctt 10264530  T

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Target: chr3; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 169 - 234
Target Start/End: Complemental strand, 10372462 - 10372397
Alignment:
Q  169 agctaatcaaaggaaaatgcttatttcaacttttcaggagatcaaaggcctagctatgtggatgat 234  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||    
T  10372462 agctaatcaaaggaaaatgtttatttcatcttttcaggagatcaaaggcctagctatgtggatgat 10372397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 306 - 359
Target Start/End: Original strand, 10584533 - 10584586
Alignment:
Q  306 ttccattgattgccacaagatttaatttacttagctgctaatagtgagtttgta 359  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10584533 ttccattgattgccacaagatttaatttacttagctgctaatagtgagtttgta 10584586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 353 - 394
Target Start/End: Original strand, 10584618 - 10584659
Alignment:
Q  353 gtttgtaatattcttaatttgtaacattttttagcaatttat 394  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  10584618 gtttgtaatattcttaatttgtaacattttttagcaatttat 10584659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 174 - 279
Target Start/End: Complemental strand, 10430367 - 10430267
Alignment:
Q  174 atcaaaggaaaatgcttatttcaacttttcaggagatcaaaggcctagctatgtggatgataatctgctcacttgatgaattgaagaaaactgcttcttt 273  Q
    ||||||||||||||||||||| | ||||||||||||||||  |||   ||| | |||||| |||| || |||| |||||||||||||||| ||||| |||    
T  10430367 atcaaaggaaaatgcttatttgatcttttcaggagatcaa--gcc---ctaagcggatgaaaatcagcccactcgatgaattgaagaaaaatgcttattt 10430273  T
Q  274 gatttt 279  Q
    ||||||    
T  10430272 gatttt 10430267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 77 - 122
Target Start/End: Complemental strand, 10430591 - 10430545
Alignment:
Q  77 gaaaactggtttcttatttat-ttttgggcttataaaactatctttg 122  Q
    |||||||||||||||||| || |||||||||||||||||||||||||    
T  10430591 gaaaactggtttcttattaatattttgggcttataaaactatctttg 10430545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 353 - 384
Target Start/End: Original strand, 9981145 - 9981176
Alignment:
Q  353 gtttgtaatattcttaatttgtaacatttttt 384  Q
    ||||||||||||||||||||||||||||||||    
T  9981145 gtttgtaatattcttaatttgtaacatttttt 9981176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 353 - 384
Target Start/End: Complemental strand, 10360112 - 10360081
Alignment:
Q  353 gtttgtaatattcttaatttgtaacatttttt 384  Q
    ||||||||||||||||||||||||||||||||    
T  10360112 gtttgtaatattcttaatttgtaacatttttt 10360081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 345
Target Start/End: Original strand, 10035653 - 10035690
Alignment:
Q  308 ccattgattgccacaagatttaatttacttagctgcta 345  Q
    ||||| ||||||||||||||||||||||| ||||||||    
T  10035653 ccattcattgccacaagatttaatttactcagctgcta 10035690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 10430640 - 10430599
Alignment:
Q  7 ttttatttaatttccagaatcaattaatgtagctcgggtagt 48  Q
    |||| ||| ||||||||||||||||||||||||| |||||||    
T  10430640 tttttttttatttccagaatcaattaatgtagcttgggtagt 10430599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 53 - 121
Target Start/End: Original strand, 10504200 - 10504267
Alignment:
Q  53 tatataactacataagtcatgccggaaaactggtttcttatttatttttgggcttataaaactatcttt 121  Q
    |||||||||| |||||| ||   |||||||| |||| ||||| ||||||||| ||||||||||||||||    
T  10504200 tatataactatataagttatattggaaaactagttt-ttattaatttttgggattataaaactatcttt 10504267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 169 - 263
Target Start/End: Original strand, 26910551 - 26910640
Alignment:
Q  169 agctaatcaaaggaaaatgcttatttcaacttttcaggagatcaaaggcctagctatgtggatgataatctgctcacttgatgaattgaagaaaa 263  Q
    ||||||| |||| ||||||||||||| | ||||||||||||||||||      ||| || ||||| |||| ||||||||||||||| ||||||||    
T  26910551 agctaattaaagaaaaatgcttatttgatcttttcaggagatcaaag-----cctaagttgatgaaaatcagctcacttgatgaatcgaagaaaa 26910640  T

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