View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15787_low_6 (Length: 359)

Name: NF15787_low_6
Description: NF15787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15787_low_6
NF15787_low_6
[»] chr2 (3 HSPs)
chr2 (1-341)||(15886259-15886609)
chr2 (185-258)||(19935604-19935677)
chr2 (185-255)||(26368802-26368872)
[»] chr4 (2 HSPs)
chr4 (185-255)||(17779544-17779614)
chr4 (41-134)||(48211958-48212051)
[»] chr5 (3 HSPs)
chr5 (185-276)||(5580231-5580322)
chr5 (188-258)||(16983862-16983932)
chr5 (221-262)||(34671961-34672002)
[»] scaffold0015 (1 HSPs)
scaffold0015 (188-286)||(80235-80333)
[»] chr1 (1 HSPs)
chr1 (185-219)||(39219517-39219551)
[»] chr8 (1 HSPs)
chr8 (185-257)||(23431065-23431137)


Alignment Details
Target: chr2 (Bit Score: 282; Significance: 1e-158; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 15886609 - 15886259
Alignment:
Q  1 ttgtcccattagagcccacaaataccgttgttttgagcttctgaatgaccccaccaaaacgtgttcattatcttttctatttcatcacaaaacgatacat 100  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||    
T  15886609 ttgtcccattagagcccacaaataccattgttttgagcttctgaatgaccccaccaaaacgtgtttatcatcttttctatttcatcacacaacgatacat 15886510  T
Q  101 gcagagtgaacaagctcataagataggttggaatagagtggagcaccaatttaataagaacctttatatcattcccttgaaaag----ttactactccat 196  Q
    | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||    
T  15886509 gaagagtgaacaagctcataagataggttgaaatagagtggagcaccaatttaataagaacctttatatcattcccttgaaaagtctcttactactccat 15886410  T
Q  197 gaattaattttcttccaaatcttatctttgataaaactgaaagttgctttcttacttcttccgatcgaagaaggtcagcctagatatttacc-gtaccaa 295  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  15886409 gaattaattttcttccaaatcttatctttgataaaactgaaagttgctttcttacttcttccgatcgaagaaggtcagcctagatatttaccggtaccaa 15886310  T
Q  296 gaacaa-----acccaagcttgtttgctatgtttttatgcgatgttgtgat 341  Q
    ||||||     ||||||||||||||||||||||||||||||||||||||||    
T  15886309 gaacaacctggacccaagcttgtttgctatgtttttatgcgatgttgtgat 15886259  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 185 - 258
Target Start/End: Original strand, 19935604 - 19935677
Alignment:
Q  185 ttactactccatgaattaattttcttccaaatcttatctttgataaaactgaaagttgctttcttacttcttcc 258  Q
    ||||| |||||||| |||||||||||||||||   ||||||||| ||| |||| || ||||| |||||||||||    
T  19935604 ttactgctccatgagttaattttcttccaaatgcgatctttgatgaaattgaacgtcgcttttttacttcttcc 19935677  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 255
Target Start/End: Complemental strand, 26368872 - 26368802
Alignment:
Q  185 ttactactccatgaattaattttcttccaaatcttatctttgataaaactgaaagttgctttcttacttct 255  Q
    ||||||||||| |||||||| || ||||||||  | ||||| |||||   |||||||||||||||||||||    
T  26368872 ttactactccaggaattaatctttttccaaattctgtctttaataaactcgaaagttgctttcttacttct 26368802  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 185 - 255
Target Start/End: Original strand, 17779544 - 17779614
Alignment:
Q  185 ttactactccatgaattaattttcttccaaatcttatctttgataaaactgaaagttgctttcttacttct 255  Q
    ||||||||||| |||||||| || ||||||||  ||||||| ||||| | |||||||||||||||||||||    
T  17779544 ttactactccaggaattaatctttttccaaattctatctttaataaacccgaaagttgctttcttacttct 17779614  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 134
Target Start/End: Complemental strand, 48212051 - 48211958
Alignment:
Q  41 ctgaatgaccccaccaaaacgtgttcattatcttttctatttcatcacaaaacgatacatgcagagtgaacaagctcataagataggttggaat 134  Q
    |||| |||||||||||||| | |||||| ||||| || || |||||||| ||||| | | | ||||| || |||||||||| ||| ||||||||    
T  48212051 ctgagtgaccccaccaaaaagagttcatcatcttctcaatctcatcacacaacgacaaaggtagagtaaataagctcataaaatacgttggaat 48211958  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 185 - 276
Target Start/End: Complemental strand, 5580322 - 5580231
Alignment:
Q  185 ttactactccatgaattaattttcttccaaatcttatctttgataaaactgaaagttgctttcttacttcttccgatcgaagaaggtcagcc 276  Q
    ||||| |||||||| |||||||||||||||||   ||||||||| ||| |||| || ||||| ||||||||||| |||  ||||||| ||||    
T  5580322 ttactgctccatgagttaattttcttccaaatgcgatctttgatgaaattgaacgtcgcttttttacttcttccaatcatagaaggtaagcc 5580231  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 258
Target Start/End: Complemental strand, 16983932 - 16983862
Alignment:
Q  188 ctactccatgaattaattttcttccaaatcttatctttgataaaactgaaagttgctttcttacttcttcc 258  Q
    |||||||| ||||||||||| ||||||||| |||| || || ||| | |||||| ||||||||||||||||    
T  16983932 ctactccacgaattaattttgttccaaatcctatccttaatgaaattaaaagtttctttcttacttcttcc 16983862  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 221 - 262
Target Start/End: Complemental strand, 34672002 - 34671961
Alignment:
Q  221 tctttgataaaactgaaagttgctttcttacttcttccgatc 262  Q
    |||||||||||| ||||||||| |||||||||||||||||||    
T  34672002 tctttgataaaattgaaagttgatttcttacttcttccgatc 34671961  T

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Target: scaffold0015 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 286
Target Start/End: Complemental strand, 80333 - 80235
Alignment:
Q  188 ctactccatgaattaattttcttccaaatcttatctttgataaaactgaaagttgctttcttacttcttccgatcgaagaaggtcagcctagatattta 286  Q
    |||||||| ||||| || ||||||||||| | ||||||||||||| |||| || || || ||||||||||  |||  | | ||| ||||||||||||||    
T  80333 ctactccaagaatttatcttcttccaaatatgatctttgataaaattgaacgtcgcctttttacttcttctaatcatatacggtaagcctagatattta 80235  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 219
Target Start/End: Complemental strand, 39219551 - 39219517
Alignment:
Q  185 ttactactccatgaattaattttcttccaaatctt 219  Q
    ||||||||||||||||||||||||||||| |||||    
T  39219551 ttactactccatgaattaattttcttccatatctt 39219517  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 257
Target Start/End: Original strand, 23431065 - 23431137
Alignment:
Q  185 ttactactccatgaattaattttcttccaaatcttatctttgataaaactgaaagttgctttcttacttcttc 257  Q
    ||||||||||| |||||||||||| ||||| |   ||||||||| ||||| ||||| |  |||||||||||||    
T  23431065 ttactactccaagaattaattttcctccaacttagatctttgattaaactaaaagtggacttcttacttcttc 23431137  T

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