View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15787_low_8 (Length: 245)
Name: NF15787_low_8
Description: NF15787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15787_low_8 |
 | |
|
| [»] scaffold0985 (1 HSPs) |
| | |
|
| [»] scaffold0114 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 25 - 233
Target Start/End: Complemental strand, 23062487 - 23062279
Alignment:
| Q |
25 |
tgtcggagtaaaggggctgcggctgatcctagtttgttgacaaacttgcgcaaacgcatgacacatttgatgattcaagaggataagtattggcgacagc |
124 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23062487 |
tgtcagagtcaaggggctgcggctgatcctagtttgttgacaaacttgcgcaaacgcatgacacatttgatgattcaagaggataagtattggcgacagc |
23062388 |
T |
|
| Q |
125 |
gagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgcttcagccacgtcaagaaagaaggtaaaccgcattaattttttgga |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23062387 |
gagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgcttcagccacgtcaagaaagaaggtaaaccgcattaattttttgga |
23062288 |
T |
|
| Q |
225 |
taatgatga |
233 |
Q |
| |
|
||||||||| |
|
|
| T |
23062287 |
taatgatga |
23062279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 36 - 233
Target Start/End: Original strand, 32880670 - 32880854
Alignment:
| Q |
36 |
aggggctgcggctgatcctagtttgttgacaaacttgcgcaaacgcatgacacatttgatgattcaagaggataagtattggcgacagcgagcaaagaca |
135 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||| |
|
|
| T |
32880670 |
aggggctgcggcttatcctagtttgttgacaaacttgcgca-------------tttgatgattcaagaggataagtatgggtgacagcgagcaaagaca |
32880756 |
T |
|
| Q |
136 |
cactggtatcgtgatggtgacttgaataccaaattttttcatgcttcagccacgtcaagaaagaaggtaaaccgcattaattttttggataatgatga |
233 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
32880757 |
cactggtatcatgatggtgacttgaataccaaatattttcatgcttcaaccacgtcaagaaagaaggtaaaccgcattaatgttttggataataatga |
32880854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 94 - 179
Target Start/End: Complemental strand, 43992323 - 43992238
Alignment:
| Q |
94 |
atgattcaagaggataagtattggcgacagcgagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgc |
179 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||||| || || ||||||||||||||||| || ||||| || ||||||||||| |
|
|
| T |
43992323 |
atgattcaagaggataagtattggagacaaagagcaaaaactcattggtatcgtgatggtgatttaaatacaaatttttttcatgc |
43992238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 82 - 176
Target Start/End: Complemental strand, 19318928 - 19318834
Alignment:
| Q |
82 |
atgacacatttgatgattcaagaggataagtattggcgacagcgagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttca |
176 |
Q |
| |
|
||||| || |||||||| ||||||||||| ||||||||||| || ||||| | |||||||| ||||||||||| | || || ||||||||||| |
|
|
| T |
19318928 |
atgactcagttgatgatacaagaggataaatattggcgacaacgtgcaaaaattcactggtaccgtgatggtgatctaaacacgaaattttttca |
19318834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 25 - 233
Target Start/End: Complemental strand, 28593093 - 28592886
Alignment:
| Q |
25 |
tgtcggagtaaaggggctgcggctgatcctagtttgttgacaaacttgcgcaaacgcatgacacatttgatgattcaagaggataagtattggcgacagc |
124 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |
|
|
| T |
28593093 |
tgtcggagtcaaggggctgcggctgatcctagtttgttgacaaacttgcgcaaacgcatgacacatttgat-attcaagaggataagtattggcgacaac |
28592995 |
T |
|
| Q |
125 |
gagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgcttcagccacgtcaagaaagaaggtaaaccgcattaattttttgga |
224 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
28592994 |
gagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgcttcagccacgtcaagaaagaagataaaccgcattaattttttgga |
28592895 |
T |
|
| Q |
225 |
taatgatga |
233 |
Q |
| |
|
||||||||| |
|
|
| T |
28592894 |
taatgatga |
28592886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 25 - 233
Target Start/End: Complemental strand, 25907489 - 25907281
Alignment:
| Q |
25 |
tgtcggagtaaaggggctgcggctgatcctagtttgttgacaaacttgcgcaaacgcatgacacatttgatgattcaagaggataagtattggcgacagc |
124 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25907489 |
tgtcggagtcgaggggttgcggctgatcctagtttgttgacaaacttgcgcaaacgcatgacacatttgatgattcaagaggataagtattggcgacagc |
25907390 |
T |
|
| Q |
125 |
gagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgcttcagccacgtcaagaaagaaggtaaaccgcattaattttttgga |
224 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
25907389 |
gagcaaagacacacttgtatcgtgatggtgacttgaataccaaatttcttcatgcttcagccatgtcaagaaagaaggtaaaccgcattaattttttgga |
25907290 |
T |
|
| Q |
225 |
taatgatga |
233 |
Q |
| |
|
||||||||| |
|
|
| T |
25907289 |
taatgatga |
25907281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 203
Target Start/End: Original strand, 21695849 - 21695952
Alignment:
| Q |
100 |
caagaggataagtattggcgacagcgagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgcttcagccacgtcaagaaaga |
199 |
Q |
| |
|
|||||||||| ||| ||| |||| |||| || || ||||||||||||||||| || |||||||| | ||| |||||||| |||| || |||||||||| |
|
|
| T |
21695849 |
caagaggatatgtactggtgacaaagagccaaaactcactggtatcgtgatggagatttgaatacgagattctttcatgcggcagcaacttcaagaaaga |
21695948 |
T |
|
| Q |
200 |
aggt |
203 |
Q |
| |
|
|||| |
|
|
| T |
21695949 |
aggt |
21695952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 25 - 233
Target Start/End: Complemental strand, 21279489 - 21279281
Alignment:
| Q |
25 |
tgtcggagtaaaggggctgcggctgatcctagtttgttgacaaacttgcgcaaacgcatgacacatttgatgattcaagaggataagtattggcgacagc |
124 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||| |||||||||||||| ||||||||||| || |||||||||||||| ||||| |||||||| || | |
|
|
| T |
21279489 |
tgtcggagtcaaggggctgcggttgatcctagttttttgacaaacttgcggaaacgcatgacgcaattgatgattcaagaagataactattggcggcaac |
21279390 |
T |
|
| Q |
125 |
gagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgcttcagccacgtcaagaaagaaggtaaaccgcattaattttttgga |
224 |
Q |
| |
|
|||| |||||||| |||||||||||||||||| ||||||| ||| |||||||| |||||||| ||||||||||||||||||| |||||||||| |||| |
|
|
| T |
21279389 |
gagctaagacacattggtatcgtgatggtgacgtgaatacaaaaaaatttcatgcatcagccacatcaagaaagaaggtaaaccacattaattttctgga |
21279290 |
T |
|
| Q |
225 |
taatgatga |
233 |
Q |
| |
|
||||||||| |
|
|
| T |
21279289 |
taatgatga |
21279281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 98 - 207
Target Start/End: Complemental strand, 28164989 - 28164880
Alignment:
| Q |
98 |
ttcaagaggataagtattggcgacagcgagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgcttcagccacgtcaagaaa |
197 |
Q |
| |
|
|||||||||||| ||||||| ||||| |||| || |||||||||||||||||||| ||| | || |||||| | || |||||||| || || || ||||| |
|
|
| T |
28164989 |
ttcaagaggatatgtattggagacagagagctaaaacacactggtatcgtgatggagacctaaacaccaaaatcttccatgcttccgcaacctccagaaa |
28164890 |
T |
|
| Q |
198 |
gaaggtaaac |
207 |
Q |
| |
|
||| |||||| |
|
|
| T |
28164889 |
gaaagtaaac |
28164880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 7e-30; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 82 - 232
Target Start/End: Complemental strand, 9817282 - 9817132
Alignment:
| Q |
82 |
atgacacatttgatgattcaagaggataagtattggcgacagcgagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgctt |
181 |
Q |
| |
|
|||||||| ||||||||| || |||| |||||||| | || ||||| ||||| ||||||||||||||||||||| | || || ||| |||||||||| |
|
|
| T |
9817282 |
atgacacacttgatgattaaataggacaagtattgatggcatcgagctaagactcactggtatcgtgatggtgaccttaacactaaaaattttcatgctg |
9817183 |
T |
|
| Q |
182 |
cagccacgtcaagaaagaaggtaaaccgcattaattttttggataatgatg |
232 |
Q |
| |
|
|||||||||| ||||| ||||||||||| |||||||||||||| ||||||| |
|
|
| T |
9817182 |
cagccacgtctagaaaaaaggtaaaccgtattaattttttggaaaatgatg |
9817132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 82 - 232
Target Start/End: Complemental strand, 10719207 - 10719057
Alignment:
| Q |
82 |
atgacacatttgatgattcaagaggataagtattggcgacagcgagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgctt |
181 |
Q |
| |
|
|||||||| ||||||||| || |||| |||||||| | || ||||| ||||| ||||||||||||||||||||| | || || ||| |||||||||| |
|
|
| T |
10719207 |
atgacacacttgatgattaaataggacaagtattgatggcatcgagctaagactcactggtatcgtgatggtgaccttaacactaaaaattttcatgctg |
10719108 |
T |
|
| Q |
182 |
cagccacgtcaagaaagaaggtaaaccgcattaattttttggataatgatg |
232 |
Q |
| |
|
|||||||||| ||||| ||||||||||| |||||||||||||| ||||||| |
|
|
| T |
10719107 |
cagccacgtctagaaaaaaggtaaaccgtattaattttttggaaaatgatg |
10719057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 209
Target Start/End: Original strand, 20483935 - 20483981
Alignment:
| Q |
163 |
accaaattttttcatgcttcagccacgtcaagaaagaaggtaaaccg |
209 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||| ||||||||||| |
|
|
| T |
20483935 |
accaaattttttcatgcttctgccacgtttagaaaaaaggtaaaccg |
20483981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 182
Target Start/End: Original strand, 21115432 - 21115520
Alignment:
| Q |
94 |
atgattcaagaggataagtattggcgacagcgagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgcttc |
182 |
Q |
| |
|
||||| ||||| ||||| |||||||| ||||| || || || || ||||||||||||||||| | || || || |||||||||||||| |
|
|
| T |
21115432 |
atgatacaagaagataaatattggcgtcagcgtgcgaaaactcattggtatcgtgatggtgatctaaacacgaagttttttcatgcttc |
21115520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 166 - 233
Target Start/End: Original strand, 30302015 - 30302081
Alignment:
| Q |
166 |
aaattttttcatgcttcagccacgtcaagaaagaaggtaaaccgcattaattttttggataatgatga |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
30302015 |
aaattttttcatgcttcagccacgtcaagaaag-aggtaaaccgcattaattttttggataatgatga |
30302081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 182
Target Start/End: Original strand, 14779531 - 14779577
Alignment:
| Q |
136 |
cactggtatcgtgatggtgacttgaataccaaattttttcatgcttc |
182 |
Q |
| |
|
||||||||||||||||| |||||||| ||||| |||||| ||||||| |
|
|
| T |
14779531 |
cactggtatcgtgatggggacttgaacaccaattttttttatgcttc |
14779577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 176
Target Start/End: Original strand, 20584724 - 20584800
Alignment:
| Q |
100 |
caagaggataagtattggcgacagcgagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttca |
176 |
Q |
| |
|
|||||||||| |||||||||||| |||| || || ||||||||||| ||||| ||||||| || ||||| ||||| |
|
|
| T |
20584724 |
caagaggatatgtattggcgacaaagagccaaaactcactggtatcgcgatggatacttgaacacgaaattctttca |
20584800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 82 - 232
Target Start/End: Original strand, 15229641 - 15229790
Alignment:
| Q |
82 |
atgacacatttgatgattcaagaggataagtattggcgacagcgagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgctt |
181 |
Q |
| |
|
||||| || ||||| ||||||||||||||||||||||| ||||| || ||||| || ||||| ||| |||||||| | ||||| ||| || |||||| |
|
|
| T |
15229641 |
atgacgcacttgattattcaagaggataagtattggcggcagcgtgctaagactcattggtaccgt-atggtgaccttaatactaaaaaaattgatgctt |
15229739 |
T |
|
| Q |
182 |
cagccacgtcaagaaagaaggtaaaccgcattaattttttggataatgatg |
232 |
Q |
| |
|
||||||| || |||| ||||||||||| |||||||||||||| ||||||| |
|
|
| T |
15229740 |
cagccacatcttgaaaaaaggtaaaccgtattaattttttggaaaatgatg |
15229790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 85 - 214
Target Start/End: Complemental strand, 10505436 - 10505307
Alignment:
| Q |
85 |
acacatttgatgattcaagaggataagtattggcgacagcgagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgcttcag |
184 |
Q |
| |
|
|||||| ||||||||||||| ||||| |||||| | || ||||| |||| || |||||||||| ||| || ||||||| |||||||||||||| || |
|
|
| T |
10505436 |
acacatctgatgattcaagaagataaatattggaggcaacgagccaagatccattggtatcgtgttggcgatatgaatactaaattttttcatgcctcta |
10505337 |
T |
|
| Q |
185 |
ccacgtcaagaaagaaggtaaaccgcatta |
214 |
Q |
| |
|
|||| || | |||||||||||||| ||||| |
|
|
| T |
10505336 |
ccacatctaaaaagaaggtaaaccacatta |
10505307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0985 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0985
Description:
Target: scaffold0985; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 98 - 200
Target Start/End: Complemental strand, 540 - 438
Alignment:
| Q |
98 |
ttcaagaggataagtattggcgacagcgagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgcttcagccacgtcaagaaa |
197 |
Q |
| |
|
||||||| || | ||||||| | ||| |||| |||||||||||||| |||||||| ||| | ||||||||||| ||||||||||| || || || ||||| |
|
|
| T |
540 |
ttcaagaagacatgtattggaggcagagagctaagacacactggtaccgtgatggagaccttaataccaaattctttcatgcttccgcaacctccagaaa |
441 |
T |
|
| Q |
198 |
gaa |
200 |
Q |
| |
|
||| |
|
|
| T |
440 |
gaa |
438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0114 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0114
Description:
Target: scaffold0114; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 207
Target Start/End: Complemental strand, 26815 - 26706
Alignment:
| Q |
98 |
ttcaagaggataagtattggcgacagcgagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgcttcagccacgtcaagaaa |
197 |
Q |
| |
|
||||||| |||| ||||||| | ||| |||| || |||||||||||||||||||| ||| | ||||||||||| || || ||||| || || || |||| |
|
|
| T |
26815 |
ttcaagaagatatgtattggaggcagagagctaaaacacactggtatcgtgatggagacctaaataccaaattcttccacgcttccgcaacctcctgaaa |
26716 |
T |
|
| Q |
198 |
gaaggtaaac |
207 |
Q |
| |
|
||| |||||| |
|
|
| T |
26715 |
gaaagtaaac |
26706 |
T |
|
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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 206
Target Start/End: Original strand, 34932178 - 34932284
Alignment:
| Q |
100 |
caagaggataagtattggcgacagcgagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgcttcagccacgtcaagaaaga |
199 |
Q |
| |
|
|||||||||| ||||||| ||||| |||| || || |||| |||||||||||| ||| |||| || ||||| || ||||| || || || || ||||||| |
|
|
| T |
34932178 |
caagaggatatgtattggagacagagagctaaaacgcacttgtatcgtgatggagacctgaacacaaaattcttccatgcgtccgcaacctccagaaaga |
34932277 |
T |
|
| Q |
200 |
aggtaaa |
206 |
Q |
| |
|
| ||||| |
|
|
| T |
34932278 |
aagtaaa |
34932284 |
T |
|
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