View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15787_low_9 (Length: 237)
Name: NF15787_low_9
Description: NF15787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15787_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 24466185 - 24466406
Alignment:
| Q |
1 |
tgttatcattctcatttgtttgtctcactttatcaacagcatttatcaatcaagtgaatatgctaatttgcattccacaaaatgtcaagtccatggtaac |
100 |
Q |
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| T |
24466185 |
tgttatcattctcatttgtttgtctcactttatcaacagcatttatcaatcaagtgaatatgctaatttgcattccacaaaatgttaagtccatggtaac |
24466284 |
T |
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| Q |
101 |
accagaatatttgacccaacatcttggaaaggcaatgttgttgaacatagttggaaataggcttttctatacagcaattacacttcaactttggatcttt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24466285 |
accagaatatttgacccaacatcttggaaaggcaatgttgttgaacataattggaaataggcttttctatacagcaattacacttcaactttggatcttt |
24466384 |
T |
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| Q |
201 |
gggccattgttacctttcctct |
222 |
Q |
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|||||||||||||| ||||||| |
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| T |
24466385 |
gggccattgttacccttcctct |
24466406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 4 - 222
Target Start/End: Original strand, 24451119 - 24451337
Alignment:
| Q |
4 |
tatcattctcatttgtttgtctcactttatcaacagcatttatcaatcaagtgaatatgctaatttgcattccacaaaatgtcaagtccatggtaacacc |
103 |
Q |
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|||||||||||||| |||||| |||| |||| |||||||||||||||||||||||||| |||| | | |||||||| ||| ||||| ||||||||||| |
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| T |
24451119 |
tatcattctcatttatttgtcacactctatctgcagcatttatcaatcaagtgaatatgttaatatcaactccacaaagtgttaagtctatggtaacacc |
24451218 |
T |
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| Q |
104 |
agaatatttgacccaacatcttggaaaggcaatgttgttgaacatagttggaaataggcttttctatacagcaattacacttcaactttggatctttggg |
203 |
Q |
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||||||||| |||||||||||||||||||| ||||| ||||| | ||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
24451219 |
agaatatttaacccaacatcttggaaaggctatgttattgaatgttgttggaattaggcttttctatacagcaattacacttcaactttggatatttggg |
24451318 |
T |
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| Q |
204 |
ccattgttacctttcctct |
222 |
Q |
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||||||||||||||||||| |
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| T |
24451319 |
ccattgttacctttcctct |
24451337 |
T |
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