View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15788_high_1 (Length: 591)
Name: NF15788_high_1
Description: NF15788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15788_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 488; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 20 - 557
Target Start/End: Complemental strand, 47117128 - 47116595
Alignment:
| Q |
20 |
gacatcatcaccggcgaagatggtgatgttggcgttcccgttgagctttgttgcctatcatacattctccgcctatccatctacaaaacaagaaattaaa |
119 |
Q |
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| T |
47117128 |
gacatcatcaccggtgaagacggtgatgttggcgttcccgttgagctttgttgcctatcatacattctccgcctatccatctacaaaacaagaaattaaa |
47117029 |
T |
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| Q |
120 |
aataatcgttaaaaggtgatcgatcgagtcattgatacgttgatattgcttaccttgctttgtgatttgatcgttaaaaggtatgaatatttatctcctt |
219 |
Q |
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| T |
47117028 |
aataatcgttaaaaggtgatcga----gtcattgatacgttgatattgcttaccttgctttgtgatttgatcgttaaaaggtatgaatatttatctcctt |
47116933 |
T |
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| Q |
220 |
gaattgaaactaaagatataaaagaaattggttattgaatatctttgataaaatataactattgtaattacctgagaagcgatgaaacaaaacaatgtca |
319 |
Q |
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| T |
47116932 |
gaattgaaactaaagatataaaagaaattggttattgaatatctttgataaaatataactattgtaattacctgagaagcgatgaaacaaaacaatgtca |
47116833 |
T |
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| Q |
320 |
gnnnnnnngagatatcataaggaaatgaaataacaagggtatgaggaagcttggagtggtgtccatctattgtggaaggattggggattcgttcattaac |
419 |
Q |
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| T |
47116832 |
gaaaaaaagagatatcataaggaaatgaaataacaagggtatgaggaagcttggagtggtgtccatctattgtggaaggattggggattcgttcattaac |
47116733 |
T |
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| Q |
420 |
ataacatcattgaatgagatgtatgacgtggaaattttctttgtaactgtctccccgaactttcagtaattaataccacaattagcacaaataatttctt |
519 |
Q |
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| T |
47116732 |
ataacatcattgaatgagatgtatgacgtggaacttttctttgtaactgtctccccgaactttcagtaattaataccacaattagcacaaataatttctt |
47116633 |
T |
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| Q |
520 |
tcattttctctttccttaccagttttccaccaaataat |
557 |
Q |
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| T |
47116632 |
tcattttctctttccttaccagttttccaccaaataat |
47116595 |
T |
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