View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15788_high_11 (Length: 365)

Name: NF15788_high_11
Description: NF15788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15788_high_11
NF15788_high_11
[»] chr2 (3 HSPs)
chr2 (83-131)||(17616578-17616626)
chr2 (245-314)||(7501378-7501446)
chr2 (88-132)||(17698334-17698378)
[»] chr8 (1 HSPs)
chr8 (245-311)||(24279642-24279707)
[»] chr4 (1 HSPs)
chr4 (41-114)||(23056985-23057059)
[»] chr1 (3 HSPs)
chr1 (245-311)||(37701557-37701622)
chr1 (245-311)||(37683895-37683960)
chr1 (46-104)||(38336811-38336869)
[»] chr6 (1 HSPs)
chr6 (246-314)||(21528877-21528944)
[»] chr3 (1 HSPs)
chr3 (246-314)||(51229546-51229613)
[»] chr7 (1 HSPs)
chr7 (246-300)||(43779796-43779849)
[»] chr5 (1 HSPs)
chr5 (245-310)||(23023852-23023916)


Alignment Details
Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 83 - 131
Target Start/End: Original strand, 17616578 - 17616626
Alignment:
Q  83 ccaccaccggatctactcaaattcgtccatccgaccacgaccctgccgt 131  Q
    ||||| |||||||||||||||| ||||||||| ||||||||||||||||    
T  17616578 ccaccgccggatctactcaaatccgtccatccaaccacgaccctgccgt 17616626  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 245 - 314
Target Start/End: Original strand, 7501378 - 7501446
Alignment:
Q  245 gcatagttttaaaactcggatcggtgatcaacttgataaagggtactgggtcactgagtcattggttcaa 314  Q
    |||||||||||||||||||| |||||||| ||| | |  ||||||||||||||| | |||||||||||||    
T  7501378 gcatagttttaaaactcggaccggtgatcgactcggt-cagggtactgggtcacagggtcattggttcaa 7501446  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 88 - 132
Target Start/End: Original strand, 17698334 - 17698378
Alignment:
Q  88 accggatctactcaaattcgtccatccgaccacgaccctgccgtc 132  Q
    ||||||||||||||||| ||||  ||| |||||||||||||||||    
T  17698334 accggatctactcaaatccgtctctcctaccacgaccctgccgtc 17698378  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 311
Target Start/End: Complemental strand, 24279707 - 24279642
Alignment:
Q  245 gcatagttttaaaactcggatcggtgatcaacttgataaagggtactgggtcactgagtcattggtt 311  Q
    ||||||||||||||||||||||||| ||  ||||||   ||| ||||||||||||||||||||||||    
T  24279707 gcatagttttaaaactcggatcggtcattgacttga-cgaggttactgggtcactgagtcattggtt 24279642  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 114
Target Start/End: Complemental strand, 23057059 - 23056985
Alignment:
Q  41 caccaccatcacccatcctccatctcaccaccgccgttcacccc-accaccggatctactcaaattcgtccatcc 114  Q
    ||||| |||||| |||||| |  |||||||||| |||||||||| |||||||||||||||||||||  |||||||    
T  23057059 caccatcatcactcatccttctcctcaccaccgtcgttcacccccaccaccggatctactcaaatttttccatcc 23056985  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 311
Target Start/End: Complemental strand, 37701622 - 37701557
Alignment:
Q  245 gcatagttttaaaactcggatcggtgatcaacttgataaagggtactgggtcactgagtcattggtt 311  Q
    ||||||||||||||||||||  |||||||||||   ||| |||||||| ||||||||||||||||||    
T  37701622 gcatagttttaaaactcggactggtgatcaactcagtaa-gggtactgcgtcactgagtcattggtt 37701557  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 311
Target Start/End: Original strand, 37683895 - 37683960
Alignment:
Q  245 gcatagttttaaaactcggatcggtgatcaacttgataaagggtactgggtcactgagtcattggtt 311  Q
    ||||||||||||||||||||   ||||||||||   ||| |||||||| ||||||||||||||||||    
T  37683895 gcatagttttaaaactcggactagtgatcaactcagtaa-gggtactgcgtcactgagtcattggtt 37683960  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 104
Target Start/End: Original strand, 38336811 - 38336869
Alignment:
Q  46 ccatcacccatcctccatctcaccaccgccgttcaccccaccaccggatctactcaaat 104  Q
    |||||||||||||| |   |||||||||||||||||||||||| || | ||||||||||    
T  38336811 ccatcacccatccttctcttcaccaccgccgttcaccccaccatcgaaactactcaaat 38336869  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 314
Target Start/End: Complemental strand, 21528944 - 21528877
Alignment:
Q  246 catagttttaaaactcggatcggtgatcaacttgataaagggtactgggtcactgagtcattggttcaa 314  Q
    ||||||||||||||||||| |||||||| ||| | |  ||||||||||||||| | |||||||||||||    
T  21528944 catagttttaaaactcggaccggtgatcgactcggt-cagggtactgggtcacagggtcattggttcaa 21528877  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 314
Target Start/End: Complemental strand, 51229613 - 51229546
Alignment:
Q  246 catagttttaaaactcggatcggtgatcaacttgataaagggtactgggtcactgagtcattggttcaa 314  Q
    ||||||||||||||||||| |||||||| ||| | |  ||||||||||||||| | |||||||||||||    
T  51229613 catagttttaaaactcggaccggtgatcgactcggt-cagggtactgggtcacagggtcattggttcaa 51229546  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 300
Target Start/End: Complemental strand, 43779849 - 43779796
Alignment:
Q  246 catagttttaaaactcggatcggtgatcaacttgataaagggtactgggtcactg 300  Q
    |||||||||||||||||||||||||||| ||| | | ||||||| ||||||||||    
T  43779849 catagttttaaaactcggatcggtgatcgactcggt-aagggtattgggtcactg 43779796  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 310
Target Start/End: Original strand, 23023852 - 23023916
Alignment:
Q  245 gcatagttttaaaactcggatcggtgatcaacttgataaagggtactgggtcactgagtcattggt 310  Q
    |||||||||||||||||| | |||||||| ||| | | |||||||||| ||||||| |||||||||    
T  23023852 gcatagttttaaaactcgaaccggtgatcgactcggt-aagggtactgagtcactgggtcattggt 23023916  T

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