View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15788_high_12 (Length: 361)
Name: NF15788_high_12
Description: NF15788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15788_high_12 |
 | |
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| [»] chr6 (11 HSPs) |
| |
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| [»] scaffold0144 (4 HSPs) |
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| [»] scaffold0133 (3 HSPs) |
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| [»] chr3 (2 HSPs) |
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| [»] scaffold0256 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] scaffold0511 (2 HSPs) |
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| [»] scaffold0230 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 303; Significance: 1e-170; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 11 - 361
Target Start/End: Complemental strand, 16656975 - 16656625
Alignment:
| Q |
11 |
caaaggccttgagaatgtgtcaaatgaggaggatgctagaaaagctaatttgattggcaagaaagacttaaaccgcttatatttgtcatgggatgattca |
110 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
16656975 |
caaaggccttgagaatgtgtcaattgaggaggatgctagaaaagctaatttgattggcaagaaagacttaaatcgcttatatttgtcatgggatcattca |
16656876 |
T |
|
| Q |
111 |
caagttagtggtgttcatgctgagcgagtacttgaagctcttgagccccattcaggacttaagcatgttggggtgggtagctatatgggaacacaatttc |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | | ||||||||||||||||||| |
|
|
| T |
16656875 |
aaagttagtggtgttcatgctgagcgagtacttgaagctcttgagccccattcaggacttaagcatattggggtggatggttatatgggaacacaatttc |
16656776 |
T |
|
| Q |
211 |
ctcgttggatgagaaatacttctattctaagaggtttagttagtattattctctatgactgtaaaaactgcaggcagcttcctccatttggtaaattacc |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16656775 |
ctcgttggatgagaaatacttctattctaagaggtttagttagtattattctctatgactgtaaaaactgcaggcagcttcctccatttggtaaattacc |
16656676 |
T |
|
| Q |
311 |
atgtttaactaacctttatgtatctggaatgagagatataaagtacattga |
361 |
Q |
| |
|
||||||| || |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16656675 |
atgtttagatattctttatgtatctggaatgagagatataaagtacattga |
16656625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 11 - 361
Target Start/End: Complemental strand, 16796126 - 16795776
Alignment:
| Q |
11 |
caaaggccttgagaatgtgtcaaatgaggaggatgctagaaaagctaatttgattggcaagaaagacttaaaccgcttatatttgtcatgggatgattca |
110 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||| |||| || |
|
|
| T |
16796126 |
caaaggccttgagaatgtgttaaatgaggaggatgctagaaaagctaatttgattggcaagaaagacttaaatcacctatatttgtcatggggtgatgca |
16796027 |
T |
|
| Q |
111 |
caagttagtggtgttcatgctgagcgagtacttgaagctcttgagccccattcaggacttaagcatgttggggtgggtagctatatgggaacacaatttc |
210 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||| ||||||| | |||| |
|
|
| T |
16796026 |
caagttagtggagttcatgctgagcgagtacttgaagctcttgagccccattcaggacttaagcatgttggggtggatggttatgggggaacagattttc |
16795927 |
T |
|
| Q |
211 |
ctcgttggatgagaaatacttctattctaagaggtttagttagtattattctctatgactgtaaaaactgcaggcagcttcctccatttggtaaattacc |
310 |
Q |
| |
|
||| |||||||| ||||||||||||||| | | | ||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
16795926 |
ctcattggatgaaaaatacttctattctgaaaaatctagttcgtattattctctctgactgtaaaaactgcaggcagcttcctttatttggtaaattacc |
16795827 |
T |
|
| Q |
311 |
atgtttaactaacctttatgtatctggaatgagagatataaagtacattga |
361 |
Q |
| |
|
|||||||| || |||| |||||||||||||| ||| ||||||||||||| |
|
|
| T |
16795826 |
atgtttaaatattctttttgtatctggaatgaatgatttaaagtacattga |
16795776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 11 - 361
Target Start/End: Complemental strand, 16780137 - 16779778
Alignment:
| Q |
11 |
caaaggccttgagaatgtgtcaaatgaggaggatgctagaaaagctaatttgattggcaagaaagacttaaaccgcttatatttgtcatgggatg----- |
105 |
Q |
| |
|
|||||||||| |||| |||| ||||| |||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||| || |
|
|
| T |
16780137 |
caaaggccttcagaaagtgttgaatgaagaggatgcaagaaaagctaatttgattggcaagaaggacttaaatcgcttatatttgtcatggggtggttat |
16780038 |
T |
|
| Q |
106 |
----attcacaagttagtggtgttcatgctgagcgagtacttgaagctcttgagccccattcaggacttaagcatgttggggtgggtagctatatgggaa |
201 |
Q |
| |
|
||||||||||| |||||||| |||| ||||||||||| |||||||||||||| |||||||| |||||| | |||||||| || | |||||||| |
|
|
| T |
16780037 |
gctaattcacaagttggtggtgttgatgccgagcgagtactggaagctcttgagcctcattcaggtcttaagagttttggggtgcagagttttatgggaa |
16779938 |
T |
|
| Q |
202 |
cacaatttcctcgttggatgagaaatacttctattctaagaggtttagttagtattattctctatgactgtaaaaactgcaggcagcttcctccatttgg |
301 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
16779937 |
cacaatttcctccttggatgagaaatacttctattctaaaaggtttagttcatattattttctatggctgtaaaaactgcaggcagcttcctccatttgg |
16779838 |
T |
|
| Q |
302 |
taaattaccatgtttaactaacctttatgtatctggaatgagagatataaagtacattga |
361 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
16779837 |
taaattaccatgtttaactaaccttcatgtatctggaatgagagatataaagtacattga |
16779778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 11 - 361
Target Start/End: Original strand, 16869189 - 16869539
Alignment:
| Q |
11 |
caaaggccttgagaatgtgtcaaatgaggaggatgctagaaaagctaatttgattggcaagaaagacttaaaccgcttatatttgtcatgggatgattca |
110 |
Q |
| |
|
|||||| |||||||||||||| || || || ||||||||| |||||||||||||||| ||||| |||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
16869189 |
caaaggtcttgagaatgtgtcgaacgaagatgatgctagagaagctaatttgattggaaagaaggacttaaatcgcttatatttgtcatggggtgattca |
16869288 |
T |
|
| Q |
111 |
caagttagtggtgttcatgctgagcgagtacttgaagctcttgagccccattcaggacttaagcatgttggggtgggtagctatatgggaacacaatttc |
210 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |||||||| ||||||||| | ||| ||||||| | |||| |
|
|
| T |
16869289 |
agagttagtggtgttcatgctaagcgagtacttgaagctcttgagccccagtcaggaattaagcattttggggtggaaggttatgggggaacagattttc |
16869388 |
T |
|
| Q |
211 |
ctcgttggatgagaaatacttctattctaagaggtttagttagtattattctctatgactgtaaaaactgcaggcagcttcctccatttggtaaattacc |
310 |
Q |
| |
|
||| |||||||| ||||||||||||||| | |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16869389 |
ctcattggatgaaaaatacttctattctgaaaggtttagttcgtattattctctctgactgtaaaaactgcaggcagcttcctccatttggtaaattacc |
16869488 |
T |
|
| Q |
311 |
atgtttaactaacctttatgtatctggaatgagagatataaagtacattga |
361 |
Q |
| |
|
|||||||| || |||| |||||||||||||| ||| ||||||||||||| |
|
|
| T |
16869489 |
atgtttaaatattctttttgtatctggaatgaatgatttaaagtacattga |
16869539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 11 - 361
Target Start/End: Complemental strand, 16786930 - 16786571
Alignment:
| Q |
11 |
caaaggccttgagaatgtgtcaaatgaggaggatgctagaaaagctaatttgattggcaagaaagacttaaaccgcttatatttgtcatgggatg----- |
105 |
Q |
| |
|
||||| |||||||||||| || ||||| ||| |||||||| | |||||||||||||||||||| |||||||| ||||||||||||||||||| || |
|
|
| T |
16786930 |
caaagtccttgagaatgtatcgaatgaagagcatgctagagacgctaatttgattggcaagaaggacttaaatcgcttatatttgtcatggggtggttat |
16786831 |
T |
|
| Q |
106 |
----attcacaagttagtggtgttcatgctgagcgagtacttgaagctcttgagccccattcaggacttaagcatgttggggtgggtagctatatgggaa |
201 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| || ||||||||||| |||||||| ||||||||| |||||||| | | ||| ||||| |
|
|
| T |
16786830 |
gctaattcacaagttagtggtgttgatgctgagcgagtactggatgctcttgagcctcattcaggtcttaagcattttggggtgaatggttatgggggaa |
16786731 |
T |
|
| Q |
202 |
cacaatttcctcgttggatgagaaatacttctattctaagaggtttagttagtattattctctatgactgtaaaaactgcaggcagcttcctccatttgg |
301 |
Q |
| |
|
||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||| |
|
|
| T |
16786730 |
tacattttcctctttggatgagaaatacttctattctaaaaggtttagttagtattattctctatggctgtaaaaattgcaggcagtttcctccatttgg |
16786631 |
T |
|
| Q |
302 |
taaattaccatgtttaactaacctttatgtatctggaatgagagatataaagtacattga |
361 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |
|
|
| T |
16786630 |
taaattaccatgtttaactattctttatgtatctaaaatgagagatataaagtacattga |
16786571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 11 - 361
Target Start/End: Complemental strand, 16986417 - 16986061
Alignment:
| Q |
11 |
caaaggccttgagaatgtgtcaaatgaggaggatgctagaaaagctaatttgattggcaagaaagacttaaaccgcttatatttgtcatgggatgat--- |
107 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||||| | |||||||||||||||| ||||| |||||||| |||||||||||||||||| |||| |
|
|
| T |
16986417 |
caaaggccttgagaatgtgtcaaataaagaggatgctaaagaagctaatttgattggaaagaaggacttaaatagcttatatttgtcatggggtgatgat |
16986318 |
T |
|
| Q |
108 |
------tcacaagttagtggtgttcatgctgagcgagtacttgaagctcttgagccccattcaggacttaagcatgttggggtgggtagctatatgggaa |
201 |
Q |
| |
|
||||||||| | |||||| ||| ||| ||||| ||||| ||||||||||||||||||||||||||| |||||||| | | ||| |||| |
|
|
| T |
16986317 |
gctaattcacaagttggcggtgttgatgtagag---gtactggaagcacttgagccccattcaggacttaagcattttggggtgaatggttatggtggaa |
16986221 |
T |
|
| Q |
202 |
cacaatttcctcgttggatgagaaatacttctattctaagaggtttagttagtattattctctatgactgtaaaaactgcaggcagcttcctccatttgg |
301 |
Q |
| |
|
|| | ||||||| |||||||| ||||||||||||||||| |||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
|
|
| T |
16986220 |
cagattttcctcattggatgaaaaatacttctattctaaaaggtctagttagtattattctctttggctgtaaaaactgcaggcagcttcctccatttgg |
16986121 |
T |
|
| Q |
302 |
taaattaccatgtttaactaacctttatgtatctggaatgagagatataaagtacattga |
361 |
Q |
| |
|
|||||||||||||||||||| |||| | |||||| |||||||||| ||||||||||||| |
|
|
| T |
16986120 |
taaattaccatgtttaactactctttttatatctgaaatgagagatttaaagtacattga |
16986061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 11 - 361
Target Start/End: Complemental strand, 17068466 - 17068107
Alignment:
| Q |
11 |
caaaggccttgagaatgtgtcaaatgaggaggatgctagaaaagctaatttgattggcaagaaagacttaaaccgcttatatttgtcatgggatgat--- |
107 |
Q |
| |
|
|||||||||| |||||||||| || || |||||||||| |||||||||||||| ||||||||| |||||||| |||||||||||||||||| |||| |
|
|
| T |
17068466 |
caaaggccttcagaatgtgtcgaaagaagaggatgctaaaaaagctaatttgaatggcaagaaggacttaaatagcttatatttgtcatggggtgatgaa |
17068367 |
T |
|
| Q |
108 |
------tcacaagttagtggtgttcatgctgagcgagtacttgaagctcttgagccccattcaggacttaagcatgttggggtgggtagctatatgggaa |
201 |
Q |
| |
|
||| ||||| | |||||| |||||||||||||||| |||||||||||| |||||||||||||||||||| |||||||| | | ||| |||| |
|
|
| T |
17068366 |
gctaattcaaaagttggcggtgttgatgctgagcgagtactggaagctcttgagtcccattcaggacttaagcattttggggtgaatggttatggtggaa |
17068267 |
T |
|
| Q |
202 |
cacaatttcctcgttggatgagaaatacttctattctaagaggtttagttagtattattctctatgactgtaaaaactgcaggcagcttcctccatttgg |
301 |
Q |
| |
|
|| | ||||||| |||||||| || ||||||| |||| | ||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
17068266 |
caaattttcctcattggatgaaaattacttcttttctgaatggtctagttagtattattctttatgactgtaaaaattgcaggcagcttcctccatttgg |
17068167 |
T |
|
| Q |
302 |
taaattaccatgtttaactaacctttatgtatctggaatgagagatataaagtacattga |
361 |
Q |
| |
|
|||||||||||| |||||| |||| | |||||||| ||| ||||||||||||||||| |
|
|
| T |
17068166 |
taaattaccatgcttaactgctctttctctatctggattgaacgatataaagtacattga |
17068107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 215 - 361
Target Start/End: Complemental strand, 16842558 - 16842412
Alignment:
| Q |
215 |
ttggatgagaaatacttctattctaagaggtttagttagtattattctctatgactgtaaaaactgcaggcagcttcctccatttggtaaattaccatgt |
314 |
Q |
| |
|
|||||||||||||||||||||| || ||| |||||| | |||| |||||| ||||| ||||||| || |||||| ||| ||||||||||||| ||| |
|
|
| T |
16842558 |
ttggatgagaaatacttctattttagaagggttagttgatgttatactctataactgtgaaaactgtcagcggcttcccccacttggtaaattaccttgt |
16842459 |
T |
|
| Q |
315 |
ttaactaacctttatgtatctggaatgagagatataaagtacattga |
361 |
Q |
| |
|
||||| | |||||||||| || |||||||||| ||||||||||||| |
|
|
| T |
16842458 |
ttaaccactctttatgtatatgcaatgagagatgtaaagtacattga |
16842412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 215 - 361
Target Start/End: Complemental strand, 16837447 - 16837301
Alignment:
| Q |
215 |
ttggatgagaaatacttctattctaagaggtttagttagtattattctctatgactgtaaaaactgcaggcagcttcctccatttggtaaattaccatgt |
314 |
Q |
| |
|
|||||||| ||||||||||||| | ||| |||||| | |||| |||||| ||||||||||||| || |||||| ||| ||||||||||||| ||| |
|
|
| T |
16837447 |
ttggatgaaaaatacttctattttggaagggttagtttatgttatactctataactgtaaaaactgtcagcggcttcccccacttggtaaattaccttgt |
16837348 |
T |
|
| Q |
315 |
ttaactaacctttatgtatctggaatgagagatataaagtacattga |
361 |
Q |
| |
|
||||| | ||||||||||||||||| ||||| ||||||| ||||| |
|
|
| T |
16837347 |
ttaaccactctttatgtatctggaatacgagatgtaaagtatattga |
16837301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 287 - 361
Target Start/End: Original strand, 18807685 - 18807759
Alignment:
| Q |
287 |
gcttcctccatttggtaaattaccatgtttaactaacctttatgtatctggaatgagagatataaagtacattga |
361 |
Q |
| |
|
|||||||||| ||||||||||||| |||||||| | |||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
18807685 |
gcttcctccacttggtaaattaccttgtttaaccactctttatgtatttggaatgagagatttaaagtacattga |
18807759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 287 - 361
Target Start/End: Original strand, 18874682 - 18874756
Alignment:
| Q |
287 |
gcttcctccatttggtaaattaccatgtttaactaacctttatgtatctggaatgagagatataaagtacattga |
361 |
Q |
| |
|
|||||||||| ||||||||||||| |||||||| | |||||||||| |||||| |||||| ||||||||||||| |
|
|
| T |
18874682 |
gcttcctccacttggtaaattaccttgtttaaccactctttatgtatgtggaatcagagatttaaagtacattga |
18874756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0144 (Bit Score: 291; Significance: 1e-163; HSPs: 4)
Name: scaffold0144
Description:
Target: scaffold0144; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 11 - 361
Target Start/End: Complemental strand, 36453 - 36103
Alignment:
| Q |
11 |
caaaggccttgagaatgtgtcaaatgaggaggatgctagaaaagctaatttgattggcaagaaagacttaaaccgcttatatttgtcatgggatgattca |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
36453 |
caaaggccttgagaatgtgtcaaatgaggaggatgctagaaaagctaatttgattggcaagaaagacttaaatcgcttatatttgtcatgggatgattca |
36354 |
T |
|
| Q |
111 |
caagttagtggtgttcatgctgagcgagtacttgaagctcttgagccccattcaggacttaagcatgttggggtgggtagctatatgggaacacaatttc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||| |
|
|
| T |
36353 |
caagttagtggtgttcatgctgagcgagtatttgatgctcttgagccccattcaggacttaagcatgttggggtggatggttatatgggaacacaatttc |
36254 |
T |
|
| Q |
211 |
ctcgttggatgagaaatacttctattctaagaggtttagttagtattattctctatgactgtaaaaactgcaggcagcttcctccatttggtaaattacc |
310 |
Q |
| |
|
|||||||||||||||||| || |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36253 |
ctcgttggatgagaaatatttatattgtaaaaggtttagttagtattattctctatgactgtaaaaactgcaggcagcttcctccatttggtaaattacc |
36154 |
T |
|
| Q |
311 |
atgtttaactaacctttatgtatctggaatgagagatataaagtacattga |
361 |
Q |
| |
|
||||||| || |||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
36153 |
atgtttagatattctttttgtatctggaatgagagatataaagtacattga |
36103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0144; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 15 - 164
Target Start/End: Complemental strand, 35023 - 34874
Alignment:
| Q |
15 |
ggccttgagaatgtgtcaaatgaggaggatgctagaaaagctaatttgattggcaagaaagacttaaaccgcttatatttgtcatgggatgattcacaag |
114 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
35023 |
ggccttgagaatgtgtcggatgaggaggatgctagaaaagcaaatttgattggcaagaaagacttaaatcgcttatatttgtcatgagatgattcacaag |
34924 |
T |
|
| Q |
115 |
ttagtggtgttcatgctgagcgagtacttgaagctcttgagccccattca |
164 |
Q |
| |
|
||||||| ||||||||||||||| || |||||| ||||||||||||| |
|
|
| T |
34923 |
ttagtggagttcatgctgagcgacgacgctaagctcgtgagccccattca |
34874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0144; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 196 - 361
Target Start/End: Original strand, 3189 - 3354
Alignment:
| Q |
196 |
tgggaacacaatttcctcgttggatgagaaatacttctattcta-agaggtttagttagtattattctctatgactgtaaaaactg-caggcagcttcct |
293 |
Q |
| |
|
|||||| ||| ||||| | ||||||||||||||||||||| | ||||||| |||| | |||| ||||| ||||||||||||| ||| | |||||| |
|
|
| T |
3189 |
tgggaatacattttccccattggatgagaaatacttctatcttggagaggtt-agttgatgttatactctacaactgtaaaaactgtcagtga-cttcct |
3286 |
T |
|
| Q |
294 |
ccatttggtaaattaccatgtttaactaacctttatgtatctggaatgagagatataaagtacattga |
361 |
Q |
| |
|
||| ||||||||||||| |||||||| | |||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
3287 |
ccacttggtaaattaccttgtttaaccactctttatgtatctggaatgagagatttaaagtacattga |
3354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0144; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 67
Target Start/End: Original strand, 2995 - 3051
Alignment:
| Q |
11 |
caaaggccttgagaatgtgtcaaatgaggaggatgctagaaaagctaatttgattgg |
67 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||||| | |||||||||||||||| |
|
|
| T |
2995 |
caaaggccttgagaatgtgtcaagtgaatgggatgctaaagaagctaatttgattgg |
3051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: scaffold0133
Description:
Target: scaffold0133; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 11 - 361
Target Start/End: Complemental strand, 17015 - 16656
Alignment:
| Q |
11 |
caaaggccttgagaatgtgtcaaatgaggaggatgctagaaaagctaatttgattggcaagaaagacttaaaccgcttatatttgtcatgggatgatt-- |
108 |
Q |
| |
|
|||||||||| |||| ||||| ||||| |||||||| | | |||||||||||||||||||||| |||||||| |||||||||||||| |||| ||||| |
|
|
| T |
17015 |
caaaggccttcagaaagtgtcgaatgaagaggatgcaaaacaagctaatttgattggcaagaaggacttaaatcgcttatatttgtcttggggtgattat |
16916 |
T |
|
| Q |
109 |
-------cacaagttagtggtgttcatgctgagcgagtacttgaagctcttgagccccattcaggacttaagcatgttggggtgggtagctatatgggaa |
201 |
Q |
| |
|
|||||||| ||||| || |||||||||||||||| ||||||||||| || |||||||| |||||| | |||||||| | |||||||||| |
|
|
| T |
16915 |
cctaattcacaagttggtggtcttgatgctgagcgagtactagaagctcttgaacctcattcaggtcttaagagttttggggtgcagtgttatatgggaa |
16816 |
T |
|
| Q |
202 |
cacaatttcctcgttggatgagaaatacttctattctaagaggtttagttagtattattctctatgactgtaaaaactgcaggcagcttcctccatttgg |
301 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
16815 |
cacaatttcctccttggatgagaaatacttctattctaaatggtttagttcatattattctctatgactgtaaaaactgcaggcaacttcctccatttgg |
16716 |
T |
|
| Q |
302 |
taaattaccatgtttaactaacctttatgtatctggaatgagagatataaagtacattga |
361 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16715 |
taaattaccatatttaactaatctttatgtatctggaatgagagatataaagtacattga |
16656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133; HSP #2
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 12 - 361
Target Start/End: Complemental strand, 11814 - 11456
Alignment:
| Q |
12 |
aaaggccttgagaatgtgtcaaatgaggaggatgctagaaaagctaatttgattggcaagaaagacttaaaccgcttatatttgtcatgggatgatt--- |
108 |
Q |
| |
|
||||||||| |||| ||||| | ||| |||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||| |
|
|
| T |
11814 |
aaaggccttcagaaagtgtcgattgaagaggatgcaagaaaagctaatttgattggcaagaaggacttaaatcgcttatatttgtcatggggtgattata |
11715 |
T |
|
| Q |
109 |
------cacaagttagtggtgttcatgctgagcgagtacttgaagctcttgagccccattcaggacttaagcatgttggggtgggtagctatatgggaac |
202 |
Q |
| |
|
||||||||||| || |||||||||||| |||| | ||| |||||||||| |||||||| || ||| | ||||| || | ||||||||| | |
|
|
| T |
11714 |
ctaattcacaagttagtagtattcatgctgagcaagtaatagaaactcttgagcctcattcaggtctaaagagttttgggttgcagggttatatgggagc |
11615 |
T |
|
| Q |
203 |
acaatttcctcgttggatgagaaatacttctattctaagaggtttagttagtattattctctatgactgtaaaaactgcaggcagcttcctccatttggt |
302 |
Q |
| |
|
||| ||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
11614 |
acattttcctcattggatgagaaatacttctattctaaaaggtctagttagtattattctctatgactgtaaaaactgcaggcagattcctccatttggt |
11515 |
T |
|
| Q |
303 |
aaattaccatgtttaactaacctttatgtatctggaatgagagatataaagtacattga |
361 |
Q |
| |
|
||||||||||| |||||| ||||| ||||||| ||||||||||| ||||||||||||| |
|
|
| T |
11514 |
aaattaccatgcttaactttcctttctgtatctagaatgagagatttaaagtacattga |
11456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 18 - 361
Target Start/End: Complemental strand, 7436 - 7081
Alignment:
| Q |
18 |
cttgagaatgtgtcaaatgaggaggatgctagaaaagctaatttgattggcaagaaagacttaaaccgcttatatttgtcatggg---atgat------t |
108 |
Q |
| |
|
|||||||||||||| || || |||||||||||| || ||||||||||| ||||||| ||||| | || ||||||||||| |||| ||||| | |
|
|
| T |
7436 |
cttgagaatgtgtcgaacgaagaggatgctagagaaactaatttgattagcaagaaggacttggatcgtttatatttgtcttggggtaatgatactaatt |
7337 |
T |
|
| Q |
109 |
cacaagttagtggtgttcatgctgagcgagtacttgaagctcttgagccccattca---ggacttaagcatgttggggtgggtagctatatgggaacaca |
205 |
Q |
| |
|
|||||||| | ||||| |||| ||||||||||| |||||||||||||||||||| ||||| |||||| |||||||| | | ||| |||||| |
|
|
| T |
7336 |
cacaagttggcagtgttgatgccgagcgagtactggaagctcttgagccccattcctccggactgaagcattttggggtgaatggttatggtggaacaat |
7237 |
T |
|
| Q |
206 |
atttcctcgttggatgagaaatacttctattctaagaggtttagttagtattattctctatgactgtaaaaactgcaggcagcttcctccatttggtaaa |
305 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||| || ||||| |||||||| ||||||||| |
|
|
| T |
7236 |
ttttccttcttggatgaaaaatacttctattctaaaaggtttagttagtattattctctataactgtaaaaattgtaggcatcttcctccgtttggtaaa |
7137 |
T |
|
| Q |
306 |
ttaccatgtttaactaacctttatgtatctggaatgagagatataaagtacattga |
361 |
Q |
| |
|
|||||||||||||||| || ||| |||||||||||||| |||||||||||||||| |
|
|
| T |
7136 |
ttaccatgtttaactattctctatttatctggaatgagatatataaagtacattga |
7081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 39 - 361
Target Start/End: Original strand, 38940582 - 38940913
Alignment:
| Q |
39 |
gaggatgctagaaaagctaatttgattggcaagaaagacttaaaccgcttatatttgtcatgggatgatt---------cacaagttagtggtgttcatg |
129 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||| |||| |||||| ||||| ||| |
|
|
| T |
38940582 |
gaggatgcaagaaaagctaatttgattggcaagaaggacttaaatcgcttatatttgtcatggggtgattataccaattcacatgttagtagtgttgatg |
38940681 |
T |
|
| Q |
130 |
ctgagcgagtacttgaagctcttgagccccattcaggacttaagcatgttggggtgggtagctatatgggaacacaatttcctcgttggatgagaaatac |
229 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||||| || ||| || ||||| || | |||||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
38940682 |
ctgagcgagtactagaagctcttgagcctcattcaggtctgaagaattttgggttgcagggttatatgggaacacattttcctcattggatgagaaatac |
38940781 |
T |
|
| Q |
230 |
ttctattctaagaggtttagttagtattattctctatgactgtaaaaactgcaggcagcttcctccatttggtaaattaccatgtttaactaacctttat |
329 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| | |
|
|
| T |
38940782 |
ttctattctaaaaggtctagttagtattattctctatgactgtaaaaactgcaggcagcttcctccatttggtaaattaccatgtttatctactcttttt |
38940881 |
T |
|
| Q |
330 |
gtatctggaatgagagatataaagtacattga |
361 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |
|
|
| T |
38940882 |
gtatttggaatgagagatataaagtacattga |
38940913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 14 - 361
Target Start/End: Original strand, 7054470 - 7054826
Alignment:
| Q |
14 |
aggccttgagaatgtgtcaaatgaggaggatgctagaaaagctaatttgattggcaagaaagacttaaaccgcttatatttgtcatgggatgatt----- |
108 |
Q |
| |
|
|||||||||||||||||| || || | |||||||||| ||||||||||||||||||| || |||||||| ||||||||| | || |||| ||||| |
|
|
| T |
7054470 |
aggccttgagaatgtgtccaacgacggggatgctagagaagctaatttgattggcaataaggacttaaatcgcttatatctttcgtggggtgattatact |
7054569 |
T |
|
| Q |
109 |
----cacaagttagtggtgttcatgctgagcgagtacttgaagctcttgagccccattcaggacttaagcatgttggggtgggtagctatatgggaacac |
204 |
Q |
| |
|
|||||||||| | ||| ||| || ||||||||| ||||||||||||||||||||||| || ||| | |||| || | |||| |||||||| |
|
|
| T |
7054570 |
aattcacaagttagggacgttgatgttgcgcgagtactagaagctcttgagccccattcaggtctcaagagttttggtgtaaacggttataggggaacac |
7054669 |
T |
|
| Q |
205 |
aatttcctcgttggatgagaaatacttctattctaagaggtttagttagtattattctctatgactgtaaaaactgcaggcagcttcctccatttggtaa |
304 |
Q |
| |
|
| ||||||||||||||||| |||||||||||||||| ||| |||||| |||||||||||||| |||| ||| ||||||| ||||||| ||||||||||| |
|
|
| T |
7054670 |
attttcctcgttggatgagcaatacttctattctaaaaggcttagttcatattattctctatggctgtgaaacctgcaggaagcttcccccatttggtaa |
7054769 |
T |
|
| Q |
305 |
attaccatgtttaactaacctttatgtatctggaatgagagatataaagtacattga |
361 |
Q |
| |
|
|||||||||||||||||||||| | || ||||||||||||||||||||||||||| |
|
|
| T |
7054770 |
attaccatgtttaactaaccttgttatagttggaatgagagatataaagtacattga |
7054826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 176; Significance: 9e-95; HSPs: 1)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 27 - 361
Target Start/End: Complemental strand, 8104 - 7761
Alignment:
| Q |
27 |
gtgtcaaatgaggaggatgctagaaaagctaatttgattggcaagaaagacttaaaccgcttatatttgtcatgggatgatt---------cacaagtta |
117 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||| |||| |||| |
|
|
| T |
8104 |
gtgtcaaatgaagaggatgcaagaaaagctaatttgattggcaagaaggacttaaatcgcttatatttgtcatggggtgattatattaattcacaggtta |
8005 |
T |
|
| Q |
118 |
gtggtgttcatgctgagcgagtacttgaagctcttgagccccattcaggacttaagcatgttggggtgggtagctatatgggaacacaatttcctcgttg |
217 |
Q |
| |
|
|| ||||| |||| ||||||||||| |||||||||||||| |||||||| |||||| | |||||||| | |||| |||||||||||||||| ||| |
|
|
| T |
8004 |
gtagtgttgatgccgagcgagtactagaagctcttgagcctcattcaggtcttaagagttttggggtgcagggttatacaggaacacaatttcctccttg |
7905 |
T |
|
| Q |
218 |
gatgagaaatacttctattctaagaggtttagttagtattattctctatgactgtaaaaactgcaggcagcttcctccatttggtaaattaccatgttta |
317 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
7904 |
gatgagaaatacttctattctaaaaggtttagttcatattattctctatgactgtaaaaacgtcaggcagcttcctctatttggtaaattaccatgttta |
7805 |
T |
|
| Q |
318 |
actaacctttatgtatctggaatgagagatataaagtacattga |
361 |
Q |
| |
|
||| | |||||||| |||||||||| |||| ||||||||||||| |
|
|
| T |
7804 |
acttatctttatgtgtctggaatgaaagatttaaagtacattga |
7761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 101; Significance: 5e-50; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 14 - 361
Target Start/End: Complemental strand, 13377049 - 13376693
Alignment:
| Q |
14 |
aggccttgagaatgtgtcaaatgaggaggatgctagaaaagctaatttgattggcaagaaagacttaaaccgcttatatttgtcatgggatgatt----- |
108 |
Q |
| |
|
||||||| ||||||||||||| || | |||||||| | |||||||||||||||| |||||||||||||| | ||||||||||||||||| ||||| |
|
|
| T |
13377049 |
aggccttcagaatgtgtcaaacgaaggggatgctaaagaagctaatttgattggaaagaaagacttaaatcacttatatttgtcatggggtgattatcct |
13376950 |
T |
|
| Q |
109 |
----cacaagttagtggtgttcatgctgagcgagtacttgaagctcttgagccccattcaggacttaagcatgttggggtgggtagctatatgggaacac |
204 |
Q |
| |
|
||||||||| ||||| ||||||||||||| || || |||||||||||||||||||| |||||| ||||| || || ||||| || |
|
|
| T |
13376949 |
agttcacaagttacaagtgttgatgctgagcgagtgctggaggctcttgagccccattcaggtcttaagagatttgggatgaaggattacgggggaatac |
13376850 |
T |
|
| Q |
205 |
aatttcctcgttggatgagaaatacttctattctaagaggtttagttagtattattctctatgactgtaaaaactgcaggcagcttcctccatttggtaa |
304 |
Q |
| |
|
| ||||||| ||||||||| ||||||||| |||||| | | |||||| |||||||||||||||| ||||||||||||| ||| ||| | ||| ||||||| |
|
|
| T |
13376849 |
attttcctccttggatgaggaatacttcttttctaaaaagcttagtttgtattattctctatgattgtaaaaactgcaagcaactttccccacttggtaa |
13376750 |
T |
|
| Q |
305 |
attaccatgtttaactaacctttatgtatctggaatgagagatataaagtacattga |
361 |
Q |
| |
|
|||||| |||||||||| || | | ||||||||||||| || ||||||||||||| |
|
|
| T |
13376749 |
attaccgtgtttaactactctctttttatctggaatgaggaatttaaagtacattga |
13376693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 22 - 268
Target Start/End: Complemental strand, 20153394 - 20153141
Alignment:
| Q |
22 |
agaatgtgtcaaatgaggaggatgctagaaaagctaatttgattggcaagaaagacttaaaccgcttatatttgtcatgggatg---------attcaca |
112 |
Q |
| |
|
|||||||||||||||| ||| |||||||| || |||||||||| |||||| ||| |||| | ||||||||||||||| | || ||||||| |
|
|
| T |
20153394 |
agaatgtgtcaaatgaagagtatgctagaggagataatttgattagcaagag-gacataaaacacttatatttgtcatgaggtggttatgttaattcaca |
20153296 |
T |
|
| Q |
113 |
agttagtggtgttcatgctgagcgagtacttgaagctcttgagccccattcaggacttaagcatgttggggtgggtagctatatgggaacacaatttcct |
212 |
Q |
| |
|
|||| ||||||| || | ||||||||||| ||||||||||||||||||||| ||||||||||| |||||||| | | ||| ||||||| | |||||| |
|
|
| T |
20153295 |
agttgatggtgttgattccgagcgagtactggaagctcttgagccccattcatgacttaagcattttggggtgaatggttatgggggaacagattttcct |
20153196 |
T |
|
| Q |
213 |
cgttggatgagaaatacttctattctaagaggtttagttagtattattctctatga |
268 |
Q |
| |
|
| |||||||||||||||||||||||||| |||| |||| || |||||||||||||| |
|
|
| T |
20153195 |
ccttggatgagaaatacttctattctaaaaggtctagtcag-attattctctatga |
20153141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0511 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: scaffold0511
Description:
Target: scaffold0511; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 287 - 361
Target Start/End: Complemental strand, 8022 - 7948
Alignment:
| Q |
287 |
gcttcctccatttggtaaattaccatgtttaactaacctttatgtatctggaatgagagatataaagtacattga |
361 |
Q |
| |
|
|||||||||| ||||||||||||| |||||||| | |||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
8022 |
gcttcctccacttggtaaattaccttgtttaaccactctttatgtatttggaatgagagatttaaagtacattga |
7948 |
T |
|
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Target: scaffold0511; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 102
Target Start/End: Complemental strand, 8304 - 8216
Alignment:
| Q |
14 |
aggccttgagaatgtgtcaaatgaggaggatgctagaaaagctaatttgattggcaagaaagacttaaaccgcttatatttgtcatggg |
102 |
Q |
| |
|
||||||||||||||| || | ||| |||||||| | |||||||||||||||| || || || ||||| ||||| || |||||||||| |
|
|
| T |
8304 |
aggccttgagaatgtatctagtgaatgggatgctaaagaagctaatttgattggtaaaaaggagttaaatcgcttgtacttgtcatggg |
8216 |
T |
|
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Target: scaffold0230 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0230
Description:
Target: scaffold0230; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 291 - 361
Target Start/End: Complemental strand, 3337 - 3267
Alignment:
| Q |
291 |
cctccatttggtaaattaccatgtttaactaacctttatgtatctggaatgagagatataaagtacattga |
361 |
Q |
| |
|
|||||| ||||||||||||| |||||||| | |||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
3337 |
cctccagttggtaaattaccttgtttaaccactctttatgtatatggaatgagagatttaaagtacattga |
3267 |
T |
|
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Target: scaffold0230; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 102
Target Start/End: Complemental strand, 3626 - 3535
Alignment:
| Q |
11 |
caaaggccttgagaatgtgtcaaatgaggaggatgctagaaaagctaatttgattggcaagaaagacttaaaccgcttatatttgtcatggg |
102 |
Q |
| |
|
|||||||||||||||||| || | ||| |||||||| | |||||||||||||||| || || || ||||| ||||| || |||||||||| |
|
|
| T |
3626 |
caaaggccttgagaatgtatctagtgaatgggatgctaaagaagctaatttgattggtaaaaaggagttaaatcgcttgtacttgtcatggg |
3535 |
T |
|
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