View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15788_high_18 (Length: 334)
Name: NF15788_high_18
Description: NF15788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15788_high_18 |
 | |
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| [»] chr5 (2 HSPs) |
| |
|
| [»] chr6 (4 HSPs) |
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|
| [»] chr4 (4 HSPs) |
| |
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| [»] chr3 (3 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 6 - 334
Target Start/End: Original strand, 41720825 - 41721153
Alignment:
| Q |
6 |
gtagattattcttctctgcatgtttttggttgtcctgtgtacgtgatgtacaactcccaagaaagaacgaagttggacccaaagtccaggaaatgtatct |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41720825 |
gtagattattcttctctgcatgtttttggttgtcctgtgtacgtgatgtacaactcccaagaaagaacgaagttggacccaaagtccaggaaatgtatct |
41720924 |
T |
|
| Q |
106 |
tcttgggttatgctgacaatgttaaggggtatcgcctgtgggatcccactgcccgcaaggttgttgttagcagggatgtagtctttgcagaaaatgaact |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41720925 |
tcttgggttatgctgacaatgttaaggggtatcgcctgtgggatcccactgcccgcaaggttgttgttagcagggatgtagtctttgcagaaaatgaact |
41721024 |
T |
|
| Q |
206 |
gcaaagtgagcagaaaaatgacagcacttctaaagagactgctattgtgcagatggaagaaaaatccaaagaaagtgattcttctgaagctgaaccggtg |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
41721025 |
gcaaagtgagcagaaaaatgacagcacttctaaagagactgctatagtgcagatggaagaaaaatccaaagaaagtgattcttctgaagctgaatcggtg |
41721124 |
T |
|
| Q |
306 |
cacgaagaacaagaaccagatgatgtcaa |
334 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
41721125 |
cacgaagaacaagaaccagatgatgtcaa |
41721153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 6 - 334
Target Start/End: Original strand, 34354425 - 34354753
Alignment:
| Q |
6 |
gtagattattcttctctgcatgtttttggttgtcctgtgtacgtgatgtacaactcccaagaaagaacgaagttggacccaaagtccaggaaatgtatct |
105 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
34354425 |
gtagattattcttctctacatgtgtttggttgtcctgtgtacgtgatgtacaactcccaagacagaacgaagttggacccaaagttcagaaaatgtatct |
34354524 |
T |
|
| Q |
106 |
tcttgggttatgctgacaatgttaaggggtatcgcctgtgggatcccactgcccgcaaggttgttgttagcagggatgtagtctttgcagaaaatgaact |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34354525 |
tcttgggttatgctgacaatgttaaggggtatcgcctgtgggatcccactgcccgcaaggttattgttagcagggatgtagtctttgcagaaaatgaact |
34354624 |
T |
|
| Q |
206 |
gcaaagtgagcagaaaaatgacagcacttctaaagagactgctattgtgcagatggaagaaaaatccaaagaaagtgattcttctgaagctgaaccggtg |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
34354625 |
gcaaagtgagcagaaaaatgacagcacttctaaagagactgctataatgcagatggaagaaaaatccaaagaaagtgattcttctgaagctgaaccgatg |
34354724 |
T |
|
| Q |
306 |
cacgaagaacaagaaccagatgatgtcaa |
334 |
Q |
| |
|
|||| ||||||||||||| |||||||||| |
|
|
| T |
34354725 |
cacggagaacaagaaccatatgatgtcaa |
34354753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 317; Significance: 1e-179; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 6 - 334
Target Start/End: Complemental strand, 27876611 - 27876283
Alignment:
| Q |
6 |
gtagattattcttctctgcatgtttttggttgtcctgtgtacgtgatgtacaactcccaagaaagaacgaagttggacccaaagtccaggaaatgtatct |
105 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27876611 |
gtagattattcttctctgcatgtgtttggttgtcctgtgtacgtgatgtacaactcccaagaaagaacgaagttggacccaaagtccaggaaatgtatct |
27876512 |
T |
|
| Q |
106 |
tcttgggttatgctgacaatgttaaggggtatcgcctgtgggatcccactgcccgcaaggttgttgttagcagggatgtagtctttgcagaaaatgaact |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27876511 |
tcttgggttatgctgacaatgttaaggggtatcgcctgtgggatcccactgcccgcaaggttgttgttagcagggatgtagtctttgcagaaaatgaact |
27876412 |
T |
|
| Q |
206 |
gcaaagtgagcagaaaaatgacagcacttctaaagagactgctattgtgcagatggaagaaaaatccaaagaaagtgattcttctgaagctgaaccggtg |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
27876411 |
gcaaagtgagcagaaaaatgacagcacttctaaagagactgctatagtgcagatggaagaaaaatccaaagaaagtgattcttctgaagctgaatcggtg |
27876312 |
T |
|
| Q |
306 |
cacgaagaacaagaaccagatgatgtcaa |
334 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
27876311 |
cacgaagaacaagaaccagatgatgtcaa |
27876283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 184 - 301
Target Start/End: Complemental strand, 26978602 - 26978485
Alignment:
| Q |
184 |
tagtctttgcagaaaatgaactgcaaagtgagcagaaaaatgacagcacttctaaagagactgctattgtgcagatggaagaaaaatccaaagaaagtga |
283 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26978602 |
tagtctttgcagaaaatgaactgcaaagtaagcagaaaaatgacagcacttctaaagagactgctattgtgcagatggaagaaaaatccaaagaaagtga |
26978503 |
T |
|
| Q |
284 |
ttcttctgaagctgaacc |
301 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
26978502 |
ttcttctgaagctgaacc |
26978485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 50 - 233
Target Start/End: Complemental strand, 8481557 - 8481374
Alignment:
| Q |
50 |
gatgtacaactcccaagaaagaacgaagttggacccaaagtccaggaaatgtatcttcttgggttatgctgacaatgttaaggggtatcgcctgtgggat |
149 |
Q |
| |
|
|||||||| ||||||||| ||||| ||| || |||||||| | |||||||| |||||||||||| ||||||| | |||||||||||| |||||||| |
|
|
| T |
8481557 |
gatgtacatctcccaagacagaacaaagacagatccaaagtctaaaaaatgtatattcttgggttatactgacaagatgaaggggtatcgcttgtgggat |
8481458 |
T |
|
| Q |
150 |
cccactgcccgcaaggttgttgttagcagggatgtagtctttgcagaaaatgaactgcaaagtgagcagaaaaatgacagcact |
233 |
Q |
| |
|
|||||| |||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
8481457 |
cccactattcgcaagcttgttgttggcagagatgtagtctttgcagaaaatgaactgcaaagtgagcagaaacatgacaacact |
8481374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 142 - 299
Target Start/End: Complemental strand, 18148970 - 18148813
Alignment:
| Q |
142 |
tgtgggatcccactgcccgcaaggttgttgttagcagggatgtagtctttgcagaaaatgaactgcaaagtgagcagaaaaatgacagcacttctaaaga |
241 |
Q |
| |
|
|||| ||| ||||| |||||||||||||||||| || |||||||||||||| ||||||||| || | |||||||| ||||| |||| ||||| ||||| |
|
|
| T |
18148970 |
tgtgagattccactacccgcaaggttgttgttatcatggatgtagtctttgtagaaaatgagttgtagagtgagcataaaaaagacaacactttcaaaga |
18148871 |
T |
|
| Q |
242 |
gactgctattgtgcagatggaagaaaaatccaaagaaagtgattcttctgaagctgaa |
299 |
Q |
| |
|
|| ||| || ||||| ||||||||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
18148870 |
gattgcaatagtgcatatggaagaaaaattcaaggaaagtgattcttctgaagctgaa |
18148813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 317; Significance: 1e-179; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 6 - 334
Target Start/End: Original strand, 42268318 - 42268646
Alignment:
| Q |
6 |
gtagattattcttctctgcatgtttttggttgtcctgtgtacgtgatgtacaactcccaagaaagaacgaagttggacccaaagtccaggaaatgtatct |
105 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42268318 |
gtagattattcttctctgcatgtgtttggttgtcctgtgtatgtgatgtacaactcccaagaaagaacgaagttggacccaaagtccaggaaatgtatct |
42268417 |
T |
|
| Q |
106 |
tcttgggttatgctgacaatgttaaggggtatcgcctgtgggatcccactgcccgcaaggttgttgttagcagggatgtagtctttgcagaaaatgaact |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42268418 |
tcttgggttatgctgacaatgttaaggggtatcgcctgtgggatcccactgcccgcaaggttgttgttagcagggatgtagtctttgcagaaaatgaact |
42268517 |
T |
|
| Q |
206 |
gcaaagtgagcagaaaaatgacagcacttctaaagagactgctattgtgcagatggaagaaaaatccaaagaaagtgattcttctgaagctgaaccggtg |
305 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42268518 |
gcaaagtaagcagaaaaatgacagcacttctaaagagactgctattgtgcagatggaagaaaaatccaaagaaagtgattcttctgaagctgaaccggtg |
42268617 |
T |
|
| Q |
306 |
cacgaagaacaagaaccagatgatgtcaa |
334 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
42268618 |
cacgaagaacaagaaccagatgatgtcaa |
42268646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 6 - 334
Target Start/End: Complemental strand, 48699723 - 48699395
Alignment:
| Q |
6 |
gtagattattcttctctgcatgtttttggttgtcctgtgtacgtgatgtacaactcccaagaaagaacgaagttggacccaaagtccaggaaatgtatct |
105 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48699723 |
gtagattattcttctctgcatgtgtttggttgtcctgtgtacgtgatgtacaactcccaagaaagaacgaagttggacccaaagtccaggaaatgtatct |
48699624 |
T |
|
| Q |
106 |
tcttgggttatgctgacaatgttaaggggtatcgcctgtgggatcccactgcccgcaaggttgttgttagcagggatgtagtctttgcagaaaatgaact |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48699623 |
tcttgggttatgctgacaatgttaaggggtatcgcctgtgggatcccactgcccgcaaggttgttgttagcagggatgtagtctttgcagaaaatgaact |
48699524 |
T |
|
| Q |
206 |
gcaaagtgagcagaaaaatgacagcacttctaaagagactgctattgtgcagatggaagaaaaatccaaagaaagtgattcttctgaagctgaaccggtg |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
48699523 |
gcaaagtgagcagaaaaatgacagcacttctaaagagactgctatagtgcagatggaagaaaaatccaaagaaagtgattcttctgaagctgaatcggtg |
48699424 |
T |
|
| Q |
306 |
cacgaagaacaagaaccagatgatgtcaa |
334 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
48699423 |
cacgaagaacaagaaccagatgatgtcaa |
48699395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 6 - 334
Target Start/End: Complemental strand, 30948085 - 30947757
Alignment:
| Q |
6 |
gtagattattcttctctgcatgtttttggttgtcctgtgtacgtgatgtacaactcccaagaaagaacgaagttggacccaaagtccaggaaatgtatct |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
30948085 |
gtagattattcttctctgcatgtttttggttgtcctgtgtacgtgatgtacaactcccaagaaagaacgaagttggacccaaagtctaggaaatgtatct |
30947986 |
T |
|
| Q |
106 |
tcttgggttatgctgacaatgttaaggggtatcgcctgtgggatcccactgcccgcaaggttgttgttagcagggatgtagtctttgcagaaaatgaact |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30947985 |
tcttgggttatgctgacaatgttaaggggtatcgcctgtgggatcccactgcccgcaaggttgttgttagcagggatgtagtctttgcagaaaatgaact |
30947886 |
T |
|
| Q |
206 |
gcaaagtgagcagaaaaatgacagcacttctaaagagactgctattgtgcagatggaagaaaaatccaaagaaagtgattcttctgaagctgaaccggtg |
305 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
30947885 |
gcaaagtgagcagaaaaatgacagcacttttaaagagactgctattctgcagatagaagaaaaatccaaagaaagtgattcttctgaagctgaatcggtg |
30947786 |
T |
|
| Q |
306 |
cacgaagaacaagaaccagatgatgtcaa |
334 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
30947785 |
cacgaagaacaagaaccagatgatgtcaa |
30947757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 41 - 233
Target Start/End: Original strand, 2001327 - 2001521
Alignment:
| Q |
41 |
tgtgtacgtgatgtacaactcccaagaaagaacgaagttggacccaaagtccaggaaatgtatcttcttgggttatgctgacaatgttaaggggtatcgc |
140 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||| || | || |||||||| || || ||||| |||||||||||||||||||| || |||||||||||| |
|
|
| T |
2001327 |
tgtgtacgcaatgaacaactcccaagaaagaacaaaactagatccaaagtctagaaattgtatattcttgggttatgctgacaacgtgaaggggtatcgc |
2001426 |
T |
|
| Q |
141 |
ctgtgggatcccactgcccgcaaggttgttgttagcaggg--atgtagtctttgcagaaaatgaactgcaaagtgagcagaaaaatgacagcact |
233 |
Q |
| |
|
|||||||||||||||| | |||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
2001427 |
ttgtgggatcccactgctcacaagcttgttgttagcagagatatgtagtctttgcagaaaatgaactgcaaagtgagcagaaacatgacaacact |
2001521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 317; Significance: 1e-179; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 6 - 334
Target Start/End: Complemental strand, 5821177 - 5820849
Alignment:
| Q |
6 |
gtagattattcttctctgcatgtttttggttgtcctgtgtacgtgatgtacaactcccaagaaagaacgaagttggacccaaagtccaggaaatgtatct |
105 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5821177 |
gtagattattcttctctgcatgtgtttggttgtcctgtgtatgtgatgtacaactcccaagaaagaacgaagttggacccaaagtccaggaaatgtatct |
5821078 |
T |
|
| Q |
106 |
tcttgggttatgctgacaatgttaaggggtatcgcctgtgggatcccactgcccgcaaggttgttgttagcagggatgtagtctttgcagaaaatgaact |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5821077 |
tcttgggttatgctgacaatgttaaggggtatcgcctgtgggatcccactgcccgcaaggttgttgttagcagggatgtagtctttgcagaaaatgaact |
5820978 |
T |
|
| Q |
206 |
gcaaagtgagcagaaaaatgacagcacttctaaagagactgctattgtgcagatggaagaaaaatccaaagaaagtgattcttctgaagctgaaccggtg |
305 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5820977 |
gcaaagtaagcagaaaaatgacagcacttctaaagagactgctattgtgcagatggaagaaaaatccaaagaaagtgattcttctgaagctgaaccggtg |
5820878 |
T |
|
| Q |
306 |
cacgaagaacaagaaccagatgatgtcaa |
334 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
5820877 |
cacgaagaacaagaaccagatgatgtcaa |
5820849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 6 - 312
Target Start/End: Complemental strand, 2815165 - 2814859
Alignment:
| Q |
6 |
gtagattattcttctctgcatgtttttggttgtcctgtgtacgtgatgtacaactcccaagaaagaacgaagttggacccaaagtccaggaaatgtatct |
105 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||| | ||||||||||| |
|
|
| T |
2815165 |
gtagattattcttctctacatgtgtttggttgtcctgtgtatgtgatgtacaactctcaagaaagaacaaagttggacccaaagtctaagaaatgtatct |
2815066 |
T |
|
| Q |
106 |
tcttgggttatgctgacaatgttaaggggtatcgcctgtgggatcccactgcccgcaaggttgttgttagcagggatgtagtctttgcagaaaatgaact |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2815065 |
tcttgggttatgctgacaatgttaaggggtatcgcctgtggggtcccactgcccgcaaggttgttgttagcagggatgtagtctttgcagaaaatgaact |
2814966 |
T |
|
| Q |
206 |
gcaaagtgagcagaaaaatgacagcacttctaaagagactgctattgtgcagatggaagaaaaatccaaagaaagtgattcttctgaagctgaaccggtg |
305 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| | ||| | ||| |
|
|
| T |
2814965 |
gcaaagtgagcagaaaaatgacagcatttctaaagagactgctatagtgcagatggaagaaaaatccaaagaaagtgattcttcagaatcagaatcagtg |
2814866 |
T |
|
| Q |
306 |
cacgaag |
312 |
Q |
| |
|
||||||| |
|
|
| T |
2814865 |
cacgaag |
2814859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 9 - 233
Target Start/End: Original strand, 42587369 - 42587593
Alignment:
| Q |
9 |
gattattcttctctgcatgtttttggttgtcctgtgtacgtgatgtacaactcccaagaaagaacgaagttggacccaaagtccaggaaatgtatcttct |
108 |
Q |
| |
|
||||||||||| | ||||| || || ||| ||||||||| ||||||||||||||||||||||| ||| | || |||||||| || |||||||| |||| |
|
|
| T |
42587369 |
gattattcttccttacatgtgttcggatgtactgtgtacgcaatgtacaactcccaagaaagaacaaagctagatccaaagtctagaaaatgtatattct |
42587468 |
T |
|
| Q |
109 |
tgggttatgctgacaatgttaaggggtatcgcctgtgggatcccactgcccgcaaggttgttgttagcagggatgtagtctttgcagaaaatgaactgca |
208 |
Q |
| |
|
|||||||||||||||| || || ||||||||| |||||||||||||||| | |||| ||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
42587469 |
tgggttatgctgacaacgtgaaagggtatcgcttgtgggatcccactgctcacaagcttgttgttagcagagatgtagtctttgcagaaaatgaactgca |
42587568 |
T |
|
| Q |
209 |
aagtgagcagaaaaatgacagcact |
233 |
Q |
| |
|
||||||||||||| |||||| |||| |
|
|
| T |
42587569 |
aagtgagcagaaacatgacaacact |
42587593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 6 - 334
Target Start/End: Original strand, 827894 - 828222
Alignment:
| Q |
6 |
gtagattattcttctctgcatgtttttggttgtcctgtgtacgtgatgtacaactcccaagaaagaacgaagttggacccaaagtccaggaaatgtatct |
105 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
827894 |
gtagattattcttctctgcatgtgtttggttgtcctgtgtacgtgatgtacaactcccaagaaagaacgaagttggacccaaagtccaggaaatgtatct |
827993 |
T |
|
| Q |
106 |
tcttgggttatgctgacaatgttaaggggtatcgcctgtgggatcccactgcccgcaaggttgttgttagcagggatgtagtctttgcagaaaatgaact |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
827994 |
tcttgggttatgctgacaatgttaaggggtatcgcctgtgggatcccactacccgcaaggttgttgttagcagggatctagtctttgcagaaaatgaact |
828093 |
T |
|
| Q |
206 |
gcaaagtgagcagaaaaatgacagcacttctaaagagactgctattgtgcagatggaagaaaaatccaaagaaagtgattcttctgaagctgaaccggtg |
305 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
828094 |
gcaaagtaagcagaaaaatgacagcacttctaaagagactgctattgtgcagatggaagaaaaatccaaagaaagtgattcttctgaagctgaaccggtg |
828193 |
T |
|
| Q |
306 |
cacgaagaacaagaaccagatgatgtcaa |
334 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
828194 |
cacgaagaacaagaaccagatgatgtcaa |
828222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 310; Significance: 1e-175; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 310; E-Value: 1e-175
Query Start/End: Original strand, 6 - 334
Target Start/End: Complemental strand, 9441994 - 9441665
Alignment:
| Q |
6 |
gtagattattcttctctgcatgtttttggttgtcctgtgtacgtgatgtacaactcccaagaaagaacgaagttggacccaaagtccaggaaatgtatct |
105 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9441994 |
gtagattattcttctctgcatgtgtttggttgtcctgtgtatgtgatgtacaactcccaagaaagaacgaagttggacccaaagtccaggaaatgtatct |
9441895 |
T |
|
| Q |
106 |
tcttgggttatgctgacaatgttaaggggtatcgcctgtgggatcccactgcccgcaaggttgttgttagcagggatgtagtctttgc-agaaaatgaac |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
9441894 |
tcttgggttatgctgacaatgttaaggggtatcgcctgtgggatcccactgcccgcaaggttgttgttagcagggatgtagtctttgcaagaaaatgaac |
9441795 |
T |
|
| Q |
205 |
tgcaaagtgagcagaaaaatgacagcacttctaaagagactgctattgtgcagatggaagaaaaatccaaagaaagtgattcttctgaagctgaaccggt |
304 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9441794 |
tgcaaagtaagcagaaaaatgacagcacttctaaagagactgctattgtgcagatggaagaaaaatccaaagaaagtgattcttctgaagctgaaccggt |
9441695 |
T |
|
| Q |
305 |
gcacgaagaacaagaaccagatgatgtcaa |
334 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
9441694 |
gcacgaagaacaagaaccagatgatgtcaa |
9441665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 9 - 233
Target Start/End: Complemental strand, 24596387 - 24596163
Alignment:
| Q |
9 |
gattattcttctctgcatgtttttggttgtcctgtgtacgtgatgtacaactcccaagaaagaacgaagttggacccaaagtccaggaaatgtatcttct |
108 |
Q |
| |
|
||||||||||| | ||||| || || ||| ||||||||| ||||||||||||||||||||||| ||| | || |||||||| || |||||||| |||| |
|
|
| T |
24596387 |
gattattcttccttacatgtgttcggatgtactgtgtacgcaatgtacaactcccaagaaagaacaaagctagatccaaagtctagaaaatgtatattct |
24596288 |
T |
|
| Q |
109 |
tgggttatgctgacaatgttaaggggtatcgcctgtgggatcccactgcccgcaaggttgttgttagcagggatgtagtctttgcagaaaatgaactgca |
208 |
Q |
| |
|
|||||||||||||||| || || ||||||||| | |||||||||||||| | |||| ||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
24596287 |
tgggttatgctgacaacgtgaaagggtatcgcttatgggatcccactgctcacaagcttgttgttagcagagatgtagtctttgcagaaaatgaactgca |
24596188 |
T |
|
| Q |
209 |
aagtgagcagaaaaatgacagcact |
233 |
Q |
| |
|
||||||||||||| |||||| |||| |
|
|
| T |
24596187 |
aagtgagcagaaacatgacaacact |
24596163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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