View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15788_high_21 (Length: 329)

Name: NF15788_high_21
Description: NF15788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15788_high_21
NF15788_high_21
[»] chr2 (6 HSPs)
chr2 (99-329)||(32665088-32665318)
chr2 (8-103)||(32664628-32664723)
chr2 (200-325)||(38504235-38504360)
chr2 (216-325)||(34770292-34770401)
chr2 (102-160)||(34770191-34770249)
chr2 (105-160)||(38504408-38504463)
[»] chr7 (11 HSPs)
chr7 (105-329)||(45184320-45184554)
chr7 (105-329)||(42359198-42359430)
chr7 (200-325)||(7927222-7927347)
chr7 (3-86)||(45183779-45183862)
chr7 (200-325)||(44265342-44265467)
chr7 (214-325)||(6998713-6998824)
chr7 (13-86)||(42358657-42358730)
chr7 (105-165)||(44265239-44265299)
chr7 (105-171)||(6998877-6998943)
chr7 (105-171)||(40544741-40544807)
chr7 (105-160)||(7927395-7927450)
[»] chr4 (12 HSPs)
chr4 (105-329)||(37074956-37075188)
chr4 (200-325)||(46595753-46595878)
chr4 (200-325)||(22504699-22504824)
chr4 (3-86)||(37075671-37075754)
chr4 (200-325)||(50960680-50960805)
chr4 (214-325)||(33832789-33832900)
chr4 (200-325)||(37918865-37918990)
chr4 (105-160)||(46595650-46595705)
chr4 (105-160)||(22504596-22504651)
chr4 (23-78)||(50961376-50961431)
chr4 (207-249)||(37492346-37492388)
chr4 (105-171)||(50960842-50960908)
[»] chr3 (2 HSPs)
chr3 (105-329)||(36498718-36498950)
chr3 (3-86)||(36499408-36499491)
[»] chr8 (3 HSPs)
chr8 (200-325)||(43734919-43735044)
chr8 (105-150)||(43735102-43735147)
chr8 (23-82)||(43735612-43735671)
[»] chr5 (2 HSPs)
chr5 (257-325)||(19558-19626)
chr5 (105-160)||(19718-19773)


Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 99 - 329
Target Start/End: Original strand, 32665088 - 32665318
Alignment:
Q  99 gaacaaacaatttatcgcggccaggagagagatcatgtacaaaacatgtagatccaaacacatgaagagggacagcgcaccgagccttggaaacaaaagt 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32665088 gaacaaacaatttatcgcggccaggagagagatcatgtacaaaacacgtagatccaaacacatgaagagggacagcgcaccgagccttggaaacaaaagt 32665187  T
Q  199 atggaatttcattgcccaatactgatgatggcatgcagtttatcaaataacagatcgcgagaatggcatcacccgaaaatctgaaaggtgcatgggcatt 298  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  32665188 atggaatttcattgcccaacactgatgatggcatgcagtttatcaaataacagatagcgagaatggcatcacccgaaaatctgaaaggtgcatgggcatt 32665287  T
Q  299 gatcaataaagttcaagctgtttcaaccaaa 329  Q
    ||||||||||||||||||||| |||||||||    
T  32665288 gatcaataaagttcaagctgtgtcaaccaaa 32665318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 8 - 103
Target Start/End: Original strand, 32664628 - 32664723
Alignment:
Q  8 agaagcaaaggccaggtaggaagaagacaatcggttgtagctcaaaaaattataaacaggatgaggcttagcagtagacatgaagagactggaaca 103  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32664628 agaaacaaaagccaggtaggaagaagacaatcggttgtagctcaaaaaattataaacaggatgaggcttagcagtagacatgaagagactggaaca 32664723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 200 - 325
Target Start/End: Complemental strand, 38504360 - 38504235
Alignment:
Q  200 tggaatttcattgcccaatactgatgatggcatgcagtttatcaaataacagatcgcgagaatggcatcacccgaaaatctgaaaggtgcatgggcattg 299  Q
    |||||| |||||  |||||||||| |||||||| | |||||||||||||||    | |||||| ||||||||| ||||| | ||||||||||| ||||||    
T  38504360 tggaatctcattatccaatactgaggatggcatacggtttatcaaataacaagcagtgagaatagcatcaccccaaaatttaaaaggtgcatgagcattg 38504261  T
Q  300 atcaataaagttcaagctgtttcaac 325  Q
    |||||||| |||| |||||| |||||    
T  38504260 atcaataaggttcgagctgtatcaac 38504235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 216 - 325
Target Start/End: Original strand, 34770292 - 34770401
Alignment:
Q  216 aatactgatgatggcatgcagtttatcaaataacagatcgcgagaatggcatcacccgaaaatctgaaaggtgcatgggcattgatcaataaagttcaag 315  Q
    ||||| || |||||||| |||||||||||||||||    | |||||| ||||||||| ||||| | ||||||||||| |||||||||||||| |||| ||    
T  34770292 aataccgaggatggcatacagtttatcaaataacaagcagtgagaatagcatcaccccaaaatttaaaaggtgcatgagcattgatcaataaggttcgag 34770391  T
Q  316 ctgtttcaac 325  Q
    |||| |||||    
T  34770392 ctgtatcaac 34770401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 102 - 160
Target Start/End: Original strand, 34770191 - 34770249
Alignment:
Q  102 caaacaatttatcgcggccaggagagagatcatgtacaaaacatgtagatccaaacaca 160  Q
    |||||||||||||||| ||||||| ||||||||| |||||||||||||| || ||||||    
T  34770191 caaacaatttatcgcgaccaggagtgagatcatgaacaaaacatgtagagccgaacaca 34770249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 105 - 160
Target Start/End: Complemental strand, 38504463 - 38504408
Alignment:
Q  105 acaatttatcgcggccaggagagagatcatgtacaaaacatgtagatccaaacaca 160  Q
    ||||||||||||| ||||||| ||||||||| |||||||||||||| || ||||||    
T  38504463 acaatttatcgcgaccaggagtgagatcatgaacaaaacatgtagagccgaacaca 38504408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 114; Significance: 8e-58; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 105 - 329
Target Start/End: Original strand, 45184320 - 45184554
Alignment:
Q  105 acaatttatcgcggccaggagagagatcatgtacaaaacatgtagatccaaacacatgaagagggacagcgcaccgag---cctt-ggaaacaaaa---- 196  Q
    |||||||||| || |||||||||||||||||| ||||||| ||||||||||||||| ||||||||||| || |  |||   |||| ||||||||||        
T  45184320 acaatttatcacgaccaggagagagatcatgtgcaaaacacgtagatccaaacacacgaagagggacatcgtaaagaggatccttaggaaacaaaaaagt 45184419  T
Q  197 --gtatggaatttcattgcccaatactgatgatggcatgcagtttatcaaataacagatcgcgagaatggcatcacccgaaaatctgaaaggtgcatggg 294  Q
      ||||||||||||||| |||||||| ||||||||||||| | |||||||||||||| | | |||||||||||||||| |||||||||||||||||||||    
T  45184420 gagtatggaatttcattacccaataccgatgatggcatgcggcttatcaaataacaggtagtgagaatggcatcaccccaaaatctgaaaggtgcatggg 45184519  T
Q  295 cattgatcaataaagttcaagctgtttcaaccaaa 329  Q
    |||||||||||||||||| |||||| |||||||||    
T  45184520 cattgatcaataaagttcgagctgtgtcaaccaaa 45184554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 105 - 329
Target Start/End: Original strand, 42359198 - 42359430
Alignment:
Q  105 acaatttatcgcggccaggagagagatcatgtacaaaacatgtagatccaaacacatgaagagggacagcgcaccgag---cctt-ggaaacaaaagt-- 198  Q
    |||||||||| ||| ||||||||||||||||| ||||||| ||||||||||||||| ||||||||||| || || |||   |||| ||||||||||||      
T  42359198 acaatttatcacggtcaggagagagatcatgtgcaaaacacgtagatccaaacacacgaagagggacaacgtacagaggatccttaggaaacaaaagtga 42359297  T
Q  199 --atggaatttcattgcccaatactgatgatggcatgcagtttatcaaataacagatcgcgagaatggcatcacccgaaaatctgaaaggtgcatgggca 296  Q
      ||||||||||||| |||||||| ||||||||||||| | ||||||||||||||     |||||||||||||||| ||||||||||||||||||| |||    
T  42359298 gtatggaatttcattacccaataccgatgatggcatgcgggttatcaaataacaggcaatgagaatggcatcaccccaaaatctgaaaggtgcatgagca 42359397  T
Q  297 ttgatcaataaagttcaagctgtttcaaccaaa 329  Q
    |||||||||||||||| || ||| |||||||||    
T  42359398 ttgatcaataaagttcgagttgtgtcaaccaaa 42359430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 200 - 325
Target Start/End: Complemental strand, 7927347 - 7927222
Alignment:
Q  200 tggaatttcattgcccaatactgatgatggcatgcagtttatcaaataacagatcgcgagaatggcatcacccgaaaatctgaaaggtgcatgggcattg 299  Q
    |||||| |||||  |||||||||| |||| ||| | |||||||||||||||    | |||||| ||||||||| ||||| | ||||||||||| ||||||    
T  7927347 tggaatctcattatccaatactgaggatgtcatacggtttatcaaataacaagcagtgagaatagcatcaccccaaaatttaaaaggtgcatgagcattg 7927248  T
Q  300 atcaataaagttcaagctgtttcaac 325  Q
    |||||||| ||||||||||| |||||    
T  7927247 atcaataaggttcaagctgtatcaac 7927222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 86
Target Start/End: Original strand, 45183779 - 45183862
Alignment:
Q  3 agaggagaagcaaaggccaggtaggaagaagacaatcggttgtagctcaaaaaattataaacaggatgaggcttagcagtagac 86  Q
    |||| |||| |||| |||| |||||||| ||||||||||| |||||||||||||||||||| ||||||||| ||||| ||||||    
T  45183779 agagcagaaacaaaagccaagtaggaaggagacaatcggtggtagctcaaaaaattataaataggatgaggattagcggtagac 45183862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 200 - 325
Target Start/End: Original strand, 44265342 - 44265467
Alignment:
Q  200 tggaatttcattgcccaatactgatgatggcatgcagtttatcaaataacagatcgcgagaatggcatcacccgaaaatctgaaaggtgcatgggcattg 299  Q
    |||||| |||||  |||||||||| |||||||| | |||||||||||||||    | |||||| ||||||||| ||||| | ||||||||||| ||||||    
T  44265342 tggaatctcattatccaatactgaggatggcatacggtttatcaaataacaagcagtgagaatagcatcaccccaaaatttaaaaggtgcatgagcattg 44265441  T
Q  300 atcaataaagttcaagctgtttcaac 325  Q
    |||||||| |||| ||| || |||||    
T  44265442 atcaataaggttcgagcagtatcaac 44265467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 214 - 325
Target Start/End: Complemental strand, 6998824 - 6998713
Alignment:
Q  214 ccaatactgatgatggcatgcagtttatcaaataacagatcgcgagaatggcatcacccgaaaatctgaaaggtgcatgggcattgatcaataaagttca 313  Q
    |||||||||| |||| |||  ||||||||||||||||    | |||||| ||||||||| ||||  | ||||||| ||| |||||||||||||| |||||    
T  6998824 ccaatactgaggatgacatagagtttatcaaataacaagcagtgagaatagcatcaccccaaaacttaaaaggtgtatgagcattgatcaataaggttca 6998725  T
Q  314 agctgtttcaac 325  Q
    |||||| |||||    
T  6998724 agctgtatcaac 6998713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 86
Target Start/End: Original strand, 42358657 - 42358730
Alignment:
Q  13 caaaggccaggtaggaagaagacaatcggttgtagctcaaaaaattataaacaggatgaggcttagcagtagac 86  Q
    |||| |||| |||||||  |||||||| || |||||||||||||||||||| ||||||||| ||||| ||||||    
T  42358657 caaaagccaagtaggaaagagacaatcagtggtagctcaaaaaattataaataggatgaggattagcggtagac 42358730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 105 - 165
Target Start/End: Original strand, 44265239 - 44265299
Alignment:
Q  105 acaatttatcgcggccaggagagagatcatgtacaaaacatgtagatccaaacacatgaag 165  Q
    ||||||||||||| ||||||| ||||||||| |||||||||||||| || |||||| ||||    
T  44265239 acaatttatcgcgaccaggagtgagatcatgaacaaaacatgtagagccgaacacacgaag 44265299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 171
Target Start/End: Complemental strand, 6998943 - 6998877
Alignment:
Q  105 acaatttatcgcggccaggagagagatcatgtacaaaacatgtagatccaaacacatgaagagggac 171  Q
    ||||||||||||  ||||||| ||||||||| |||||||||||||| || |||||| |||| |||||    
T  6998943 acaatttatcgcaaccaggagtgagatcatgaacaaaacatgtagagccgaacacacgaagtgggac 6998877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 171
Target Start/End: Original strand, 40544741 - 40544807
Alignment:
Q  105 acaatttatcgcggccaggagagagatcatgtacaaaacatgtagatccaaacacatgaagagggac 171  Q
    ||||||||||||| | ||||| ||||||||| |||||||||||||| || |||||| |||| |||||    
T  40544741 acaatttatcgcgactaggagtgagatcatgaacaaaacatgtagagccgaacacacgaagtgggac 40544807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 105 - 160
Target Start/End: Complemental strand, 7927450 - 7927395
Alignment:
Q  105 acaatttatcgcggccaggagagagatcatgtacaaaacatgtagatccaaacaca 160  Q
    ||||||||||||| | ||||| ||||||||| |||||||||||||| || ||||||    
T  7927450 acaatttatcgcgactaggagtgagatcatgaacaaaacatgtagagccgaacaca 7927395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 107; Significance: 1e-53; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 105 - 329
Target Start/End: Complemental strand, 37075188 - 37074956
Alignment:
Q  105 acaatttatcgcggccaggagagagatcatgtacaaaacatgtagatccaaacacatgaagagggacagcgcaccgag---cctt-ggaaacaaaagt-- 198  Q
    |||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||| || || | |   |||| ||||||||||||      
T  37075188 acaatttatcacggccaggagagagatcatgtgcaaaacacgtagatccaaacacacgaagagggacaacgtacagtggatccttaggaaacaaaagtga 37075089  T
Q  199 --atggaatttcattgcccaatactgatgatggcatgcagtttatcaaataacagatc-gcgagaatggcatcacccgaaaatctgaaaggtgcatgggc 295  Q
      ||||||||||||| |||||||| ||||||||||||| ||||||||||||||| ||| | |||||||||||||||| ||||||| ||||||||||| ||    
T  37075088 gtatggaatttcattacccaataccgatgatggcatgcggtttatcaaataaca-atcagtgagaatggcatcaccccaaaatctaaaaggtgcatgagc 37074990  T
Q  296 attgatcaataaagttcaagctgtttcaaccaaa 329  Q
    ||| ||||||||||||| |||||| |||||||||    
T  37074989 attcatcaataaagttcgagctgtgtcaaccaaa 37074956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 200 - 325
Target Start/End: Original strand, 46595753 - 46595878
Alignment:
Q  200 tggaatttcattgcccaatactgatgatggcatgcagtttatcaaataacagatc-gcgagaatggcatcacccgaaaatctgaaaggtgcatgggcatt 298  Q
    |||||| |||||  |||||||||| |||||||| | ||||||||||||||| ||| | |||||| ||||||||| ||||| | ||||||||||| |||||    
T  46595753 tggaatctcattatccaatactgaggatggcatacggtttatcaaataaca-atcagtgagaatagcatcaccccaaaatttaaaaggtgcatgagcatt 46595851  T
Q  299 gatcaataaagttcaagctgtttcaac 325  Q
    ||||||||| |||| |||||| |||||    
T  46595852 gatcaataaggttcgagctgtatcaac 46595878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 200 - 325
Target Start/End: Original strand, 22504699 - 22504824
Alignment:
Q  200 tggaatttcattgcccaatactgatgatggcatgcagtttatcaaataacagatcgcgagaatggcatcacccgaaaatctgaaaggtgcatgggcattg 299  Q
    |||||| |||||  |||||||||| ||||||||   ||||||||||||||| |  | |||||| ||||||||| ||||| | ||||||||||| ||||||    
T  22504699 tggaatctcattatccaatactgaggatggcataaggtttatcaaataacaaaaagtgagaatagcatcaccccaaaatttaaaaggtgcatgagcattg 22504798  T
Q  300 atcaataaagttcaagctgtttcaac 325  Q
    |||||||| |||| |||||| |||||    
T  22504799 atcaataaggttcgagctgtatcaac 22504824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 86
Target Start/End: Complemental strand, 37075754 - 37075671
Alignment:
Q  3 agaggagaagcaaaggccaggtaggaagaagacaatcggttgtagctcaaaaaattataaacaggatgaggcttagcagtagac 86  Q
    |||| |||| |||| |||| |||||||| ||||||||||| |||||||||||||||||||| ||||||||| ||||| ||||||    
T  37075754 agagcagaaacaaaagccaagtaggaaggagacaatcggtggtagctcaaaaaattataaataggatgaggattagcggtagac 37075671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 200 - 325
Target Start/End: Complemental strand, 50960805 - 50960680
Alignment:
Q  200 tggaatttcattgcccaatactgatgatggcatgcagtttatcaaataacagatcgcgagaatggcatcacccgaaaatctgaaaggtgcatgggcattg 299  Q
    |||||| |||||  |||||||||| |||||||| | |||||||||||||||    | |||||| ||||||||| ||| | | ||| ||||||||||||||    
T  50960805 tggaatctcattatccaatactgaggatggcatacggtttatcaaataacaagcagtgagaatagcatcaccccaaagtttaaaacgtgcatgggcattg 50960706  T
Q  300 atcaataaagttcaagctgtttcaac 325  Q
    |||||||| |||| |||||| |||||    
T  50960705 atcaataaggttcgagctgtatcaac 50960680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 214 - 325
Target Start/End: Complemental strand, 33832900 - 33832789
Alignment:
Q  214 ccaatactgatgatggcatgcagtttatcaaataacagatcgcgagaatggcatcacccgaaaatctgaaaggtgcatgggcattgatcaataaagttca 313  Q
    |||| |||||||||||||||| ||| ||||||||||||   |  ||||  ||||||||| ||||| | ||||||||||| |||||||||||||| ||||     
T  33832900 ccaaaactgatgatggcatgcggttgatcaaataacaggctgtcagaaccgcatcaccccaaaattttaaaggtgcatgagcattgatcaataaggttcg 33832801  T
Q  314 agctgtttcaac 325  Q
    |||||| |||||    
T  33832800 agctgtatcaac 33832789  T

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Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 200 - 325
Target Start/End: Original strand, 37918865 - 37918990
Alignment:
Q  200 tggaatttcattgcccaatactgatgatggcatgcagtttatcaaataacagatcgcgagaatggcatcacccgaaaatctgaaaggtgcatgggcattg 299  Q
    |||||| |||||  |||| |||||||||||||||  ||| ||||||||||||   |  ||||  ||||||||| ||||| | ||||||||||| ||||||    
T  37918865 tggaatctcattatccaaaactgatgatggcatgtggttgatcaaataacaggctgtcagaaccgcatcaccccaaaattttaaaggtgcatgagcattg 37918964  T
Q  300 atcaataaagttcaagctgtttcaac 325  Q
    |||||||| |||| |||||| |||||    
T  37918965 atcaataaggttcgagctgtatcaac 37918990  T

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Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 105 - 160
Target Start/End: Original strand, 46595650 - 46595705
Alignment:
Q  105 acaatttatcgcggccaggagagagatcatgtacaaaacatgtagatccaaacaca 160  Q
    ||||||||||||| ||||||| ||||||||| |||||||||||||| || ||||||    
T  46595650 acaatttatcgcgaccaggagtgagatcatgaacaaaacatgtagagccgaacaca 46595705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 105 - 160
Target Start/End: Original strand, 22504596 - 22504651
Alignment:
Q  105 acaatttatcgcggccaggagagagatcatgtacaaaacatgtagatccaaacaca 160  Q
    ||||||||||||| | ||||| ||||||||| |||||||||||||| || ||||||    
T  22504596 acaatttatcgcgacaaggagtgagatcatgaacaaaacatgtagagccgaacaca 22504651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 23 - 78
Target Start/End: Complemental strand, 50961431 - 50961376
Alignment:
Q  23 gtaggaagaagacaatcggttgtagctcaaaaaattataaacaggatgaggcttag 78  Q
    |||||||| ||||||||||| ||| |||||||| || |||||||||||||| ||||    
T  50961431 gtaggaaggagacaatcggtcgtaactcaaaaagttgtaaacaggatgaggattag 50961376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 249
Target Start/End: Complemental strand, 37492388 - 37492346
Alignment:
Q  207 tcattgcccaatactgatgatggcatgcagtttatcaaataac 249  Q
    ||||| ||||||||||| |||| ||||||||||||||||||||    
T  37492388 tcattacccaatactgaggatgacatgcagtttatcaaataac 37492346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 171
Target Start/End: Complemental strand, 50960908 - 50960842
Alignment:
Q  105 acaatttatcgcggccaggagagagatcatgtacaaaacatgtagatccaaacacatgaagagggac 171  Q
    ||||||||||| | | ||||| ||||||||| |||||||||||||| || |||||| |||| |||||    
T  50960908 acaatttatcgtgactaggagtgagatcatgaacaaaacatgtagagccgaacacacgaagtgggac 50960842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 105 - 329
Target Start/End: Complemental strand, 36498950 - 36498718
Alignment:
Q  105 acaatttatcgcggccaggagagagatcatgtacaaaacatgtagatccaaacacatgaagagggacagcgcaccgag---cctt-ggaaacaaaagt-- 198  Q
    |||||||||| || |||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||  |  ||   |||| ||||||||||||      
T  36498950 acaatttatcacgaccaggagagagatcatgtacaaaacacgtagatccaaacacacgaagaggaacagcgtgcaaaggatccttaggaaacaaaagtga 36498851  T
Q  199 --atggaatttcattgcccaatactgatgatggcatgcagtttatcaaataacagatcgcgagaatggcatcacccgaaaatctgaaaggtgcatgggca 296  Q
      ||||||||||||| |||||||| ||||||||||||| ||||||||||||||||   | |||||||| ||||||| |||| |||||||||||||| |||    
T  36498850 gtatggaatttcattacccaataccgatgatggcatgcggtttatcaaataacaggcagtgagaatggtatcaccccaaaaactgaaaggtgcatgagca 36498751  T
Q  297 ttgatcaataaagttcaagctgtttcaaccaaa 329  Q
    ||||| |||||||||| |||||| |||||||||    
T  36498750 ttgattaataaagttcgagctgtgtcaaccaaa 36498718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 3 - 86
Target Start/End: Complemental strand, 36499491 - 36499408
Alignment:
Q  3 agaggagaagcaaaggccaggtaggaagaagacaatcggttgtagctcaaaaaattataaacaggatgaggcttagcagtagac 86  Q
    |||| |||| |||| |||| |||||||| ||||||||||| |||||||| ||||||||||| ||||||||| ||||| ||||||    
T  36499491 agagcagaaacaaaagccaagtaggaaggagacaatcggtggtagctcagaaaattataaataggatgaggattagcggtagac 36499408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 200 - 325
Target Start/End: Complemental strand, 43735044 - 43734919
Alignment:
Q  200 tggaatttcattgcccaatactgatgatggcatgcagtttatcaaataacagatcgcgagaatggcatcacccgaaaatctgaaaggtgcatgggcattg 299  Q
    |||||| |||||  |||||||||| |||||||| | |||||||||||||||    | |||||| ||||||||| ||||| | ||||||||||| ||||||    
T  43735044 tggaatctcattatccaatactgaggatggcatacggtttatcaaataacaagcagtgagaatagcatcaccccaaaatttaaaaggtgcatgagcattg 43734945  T
Q  300 atcaataaagttcaagctgtttcaac 325  Q
    |||||||| |||| || ||| |||||    
T  43734944 atcaataaggttcgagttgtatcaac 43734919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 105 - 150
Target Start/End: Complemental strand, 43735147 - 43735102
Alignment:
Q  105 acaatttatcgcggccaggagagagatcatgtacaaaacatgtaga 150  Q
    ||||||||||||| ||||||| ||||||||| ||||||||||||||    
T  43735147 acaatttatcgcgaccaggagtgagatcatgaacaaaacatgtaga 43735102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 23 - 82
Target Start/End: Complemental strand, 43735671 - 43735612
Alignment:
Q  23 gtaggaagaagacaatcggttgtagctcaaaaaattataaacaggatgaggcttagcagt 82  Q
    |||||||| ||||| ||||| ||| ||||||||||| || ||||||||||| ||||||||    
T  43735671 gtaggaaggagacagtcggtggtaactcaaaaaattgtagacaggatgaggattagcagt 43735612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 325
Target Start/End: Complemental strand, 19626 - 19558
Alignment:
Q  257 gagaatggcatcacccgaaaatctgaaaggtgcatgggcattgatcaataaagttcaagctgtttcaac 325  Q
    |||||| ||||||||| ||||| | ||||||||||| ||||| |||||||| |||| |||||| |||||    
T  19626 gagaatagcatcaccccaaaatttaaaaggtgcatgagcatttatcaataaggttcgagctgtatcaac 19558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 105 - 160
Target Start/End: Complemental strand, 19773 - 19718
Alignment:
Q  105 acaatttatcgcggccaggagagagatcatgtacaaaacatgtagatccaaacaca 160  Q
    ||||||||||||| ||||||| ||||||||  |||||||||||||| || ||||||    
T  19773 acaatttatcgcgaccaggagtgagatcataaacaaaacatgtagagccgaacaca 19718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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