View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15788_high_23 (Length: 324)
Name: NF15788_high_23
Description: NF15788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15788_high_23 |
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| [»] scaffold0356 (1 HSPs) |
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| [»] scaffold0075 (1 HSPs) |
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Alignment Details
Target: scaffold0356 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: scaffold0356
Description:
Target: scaffold0356; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 11575 - 11261
Alignment:
| Q |
1 |
agcgtataaaatatgagtggggaaagagactccacagcaataggacaatggaatgaggtgtccatcagtcgcagccatggaaagagcccgactaagaacc |
100 |
Q |
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| T |
11575 |
agcgtataaaatatgagtggggaaagatactccacgacaataggacattggaatgagttgtccgtcagtcgcagccatggaaagcgcccgactaagaacc |
11476 |
T |
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| Q |
101 |
tcttcagctagacaaaaaagaagcggtgacaatgggtctccttggcaaacaccacgcgaacatgaaaagaacccaacggccttcccattaaccaatactg |
200 |
Q |
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| T |
11475 |
tcttcaactagacaaaaaagaagcggtgacaatgggtctccttggcgaacaccatgcgaacaagtaaagaacccaacggctttcccattaaccaagactg |
11376 |
T |
|
| Q |
201 |
ataaacgagcggattgcaaaatcaccaaaatccaatgcacaaatttttcatcaaaactaaaccgctgaagcaccgcaagaagaaaattccaatctaacgc |
300 |
Q |
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| T |
11375 |
ataaacgagcggattgcaaaatcaccaaaatccaatgcacaaatttttcatcaaaaccaaaccgctgaagcaccgcaagaagaaaattccaatctaacgt |
11276 |
T |
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| Q |
301 |
atcgaatgcctttgc |
315 |
Q |
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| T |
11275 |
atcgaatgcctttgc |
11261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 104; Significance: 8e-52; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 19739889 - 19739578
Alignment:
| Q |
1 |
agcgtataaaatatgagtggggaaagagactccacagcaataggacaatggaatgaggtgtccatcagtcgcagccatggaaagagcccgactaagaacc |
100 |
Q |
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| T |
19739889 |
agcgtataaaatctgagtgggaagagagaccccacgacaataagacattggtgtgagtcgtccgaaagttgaagcaatggagagtgcccgactaagaacc |
19739790 |
T |
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| Q |
101 |
tcttcagctagacaaaaaagaagcggtgacaatgggtctccttggcaaacaccacgcgaacatgaaaagaacccaacggccttcccattaaccaatactg |
200 |
Q |
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| T |
19739789 |
tcttcagccagacagaagagaagaggggacaatgggtgtccttgtcgaaccccacccgagcaagaaaaaaacccaacagctttcccattaaccaacactg |
19739690 |
T |
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| Q |
201 |
ataaacgagcggattgcaaaatcaccaaaatccaatgcacaaatttttcatcaaaactaaaccgctgaagcaccgcaagaagaaaattccaatctaacgc |
300 |
Q |
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| T |
19739689 |
ataaacgggctgatttcaaaatcaccaagatccaatgcacaattttttcatgaaaaccaaaccgccgaagaaccaaaataaggaaattccaatctaaggt |
19739590 |
T |
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| Q |
301 |
atcgaatgcctt |
312 |
Q |
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| T |
19739589 |
atcgaaagcctt |
19739578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0075 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0075
Description:
Target: scaffold0075; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 155
Target Start/End: Original strand, 48730 - 48800
Alignment:
| Q |
85 |
agcccgactaagaacctcttcagctagacaaaaaagaagcggtgacaatgggtctccttggcaaacaccac |
155 |
Q |
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| T |
48730 |
agcccggcttagcacctcttcagctagacagaaaagaaggggggacaaggggtccccttgtcgaacaccac |
48800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 156
Target Start/End: Original strand, 15144206 - 15144264
Alignment:
| Q |
98 |
acctcttcagctagacaaaaaagaagcggtgacaatgggtctccttggcaaacaccacg |
156 |
Q |
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| T |
15144206 |
acctcttcagctagacagaaaagaaggggggacaaggggtccccttgtcgaacaccacg |
15144264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 155
Target Start/End: Original strand, 9007 - 9077
Alignment:
| Q |
85 |
agcccgactaagaacctcttcagctagacaaaaaagaagcggtgacaatgggtctccttggcaaacaccac |
155 |
Q |
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| T |
9007 |
agcccggcttagcacctcttcagctagacagaaaagaaggggggacaaggggtccccttgtcgaacaccac |
9077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 123
Target Start/End: Original strand, 8636213 - 8636245
Alignment:
| Q |
91 |
actaagaacctcttcagctagacaaaaaagaag |
123 |
Q |
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| T |
8636213 |
actaagaacctcttcagctaaacaaaaaagaag |
8636245 |
T |
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