View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15788_high_24 (Length: 324)
Name: NF15788_high_24
Description: NF15788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15788_high_24 |
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| [»] chr4 (6 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-175; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-175
Query Start/End: Original strand, 11 - 324
Target Start/End: Complemental strand, 36941969 - 36941656
Alignment:
| Q |
11 |
caaaggaaaaaactcttgcttgtgtatgagtacatgccaaatggtagtttagacattcatcttttcaagaaacaaagtttgttgaaatggggtgttagat |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36941969 |
caaaggaaaaaactcttgcttgtgtatgagtacatgccaaatggtagtttagacattcatcttttcaagaaacaaagtttgttgaaatggggtgttagat |
36941870 |
T |
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| Q |
111 |
atacaatagctaaaggcttggcatctgcattgttgtacttgcatgaagaatgggaacaatgtgttgtacatagagacataaaagcaagtaacatcatgtt |
210 |
Q |
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| T |
36941869 |
atacaatagctaaaggcttggcatctgcattgttgtacttgcatgaagaatgggaacaatgtgttgtacatagagacataaaagcaagtaacatcatgtt |
36941770 |
T |
|
| Q |
211 |
ggattcagagtttaacgcaaaacttggagatttcggtttagcaaggtttgtggatcatgcaaaaggtggacaaaccacagctttagcagggactatggga |
310 |
Q |
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| T |
36941769 |
ggattcagaatttaacgcaaaacttggagatttcggtttagcaaggtttgtggatcatgcaaaaggtggacaaaccacagctttagcagggactatggga |
36941670 |
T |
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| Q |
311 |
tacatggctcctga |
324 |
Q |
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|||||||||||||| |
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| T |
36941669 |
tacatggctcctga |
36941656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 12 - 324
Target Start/End: Original strand, 36939150 - 36939462
Alignment:
| Q |
12 |
aaaggaaaaaactcttgcttgtgtatgagtacatgccaaatggtagtttagacattcatcttttcaagaaacaaagtttgttgaaatggggtgttagata |
111 |
Q |
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| T |
36939150 |
aaagaaaaaagcttttacttgtatatgagtacatgccaaatggtagtttagacattcatcttttcaaaaatcaaagtttcttgaaatggggtgttagata |
36939249 |
T |
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| Q |
112 |
tacaatagctaaaggcttggcatctgcattgttgtacttgcatgaagaatgggaacaatgtgttgtacatagagacataaaagcaagtaacatcatgttg |
211 |
Q |
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| T |
36939250 |
tacaatagctagaggcttggcttctgcactgttatatttgcatgaagaatgggaacaatgtgttgtacatagagacataaaagcaagtaacatcatgttg |
36939349 |
T |
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| Q |
212 |
gattcagagtttaacgcaaaacttggagatttcggtttagcaaggtttgtggatcatgcaaaaggtggacaaaccacagctttagcagggactatgggat |
311 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||| |||||| |
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| T |
36939350 |
gattcagagtttaatgcaaaacttggagatttcggtttagcaaggtttgtggaccatgcaaaaggtgcacaaactacagctttagcagggactttgggat |
36939449 |
T |
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| Q |
312 |
acatggctcctga |
324 |
Q |
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||||||||||||| |
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| T |
36939450 |
acatggctcctga |
36939462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 246
Target Start/End: Original strand, 36949483 - 36949613
Alignment:
| Q |
116 |
atagctaaaggcttggcatctgcattgttgtacttgcatgaagaatgggaacaatgtgttgtacatagagacataaaagcaagtaacatcatgttggatt |
215 |
Q |
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||||||| ||| ||||| || ||||| |||||| |||||||||| || || || ||||| ||||||||||||||||| |||| || | |||||||||| |
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| T |
36949483 |
atagctagaggtttggcctcggcattattgtacctgcatgaagagtgtgagcattgtgtgctacatagagacataaaatcaagcaatgttatgttggatt |
36949582 |
T |
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| Q |
216 |
cagagtttaacgcaaaacttggagatttcgg |
246 |
Q |
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| | || || |||| |||||||||||||| |
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| T |
36949583 |
ctaatttcaatacaaagcttggagatttcgg |
36949613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 246
Target Start/End: Original strand, 36959617 - 36959747
Alignment:
| Q |
116 |
atagctaaaggcttggcatctgcattgttgtacttgcatgaagaatgggaacaatgtgttgtacatagagacataaaagcaagtaacatcatgttggatt |
215 |
Q |
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||||||| ||| ||||| || ||||| |||||| |||||||||| || || || ||||| ||||||||||||||||| |||| || | |||||||||| |
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| T |
36959617 |
atagctagaggtttggcctcggcattattgtacctgcatgaagagtgtgagcattgtgtgctacatagagacataaaatcaagcaatgttatgttggatt |
36959716 |
T |
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| Q |
216 |
cagagtttaacgcaaaacttggagatttcgg |
246 |
Q |
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| | || || |||| |||||||||||||| |
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| T |
36959717 |
ctaatttcaatacaaagcttggagatttcgg |
36959747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 213
Target Start/End: Original strand, 36934450 - 36934535
Alignment:
| Q |
128 |
ttggcatctgcattgttgtacttgcatgaagaatgggaacaatgtgttgtacatagagacataaaagcaagtaacatcatgttgga |
213 |
Q |
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| T |
36934450 |
ttggcctcggcattgctttatttgcaggaagaatgggaaaaatgtgtgattcatagggacataaaatcaagcaacataatgttgga |
36934535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 173
Target Start/End: Original strand, 5820934 - 5820970
Alignment:
| Q |
137 |
gcattgttgtacttgcatgaagaatgggaacaatgtg |
173 |
Q |
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| T |
5820934 |
gcattgttgtaccttcatgaagaatgggaacaatgtg |
5820970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 128 - 213
Target Start/End: Original strand, 47871573 - 47871658
Alignment:
| Q |
128 |
ttggcatctgcattgttgtacttgcatgaagaatgggaacaatgtgttgtacatagagacataaaagcaagtaacatcatgttgga |
213 |
Q |
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| T |
47871573 |
ttggcttcggcattgttgtatcttcatgaagaatgggaacaatgtgtgattcatagagacataaaatccagcaacattatgttgga |
47871658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 62
Target Start/End: Complemental strand, 39226160 - 39226124
Alignment:
| Q |
26 |
ttgcttgtgtatgagtacatgccaaatggtagtttag |
62 |
Q |
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| T |
39226160 |
ttgcttgtttatgagtacatgacaaatggtagtttag |
39226124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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