View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15788_high_27 (Length: 303)

Name: NF15788_high_27
Description: NF15788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15788_high_27
NF15788_high_27
[»] scaffold0066 (2 HSPs)
scaffold0066 (1-217)||(4255-4470)
scaffold0066 (225-294)||(4526-4595)
[»] chr6 (2 HSPs)
chr6 (1-214)||(21551994-21552207)
chr6 (225-294)||(21552266-21552335)
[»] chr7 (5 HSPs)
chr7 (1-217)||(8773992-8774208)
chr7 (1-217)||(18770551-18770767)
chr7 (225-294)||(18770823-18770892)
chr7 (55-128)||(13443260-13443333)
chr7 (92-136)||(7434413-7434457)
[»] chr2 (2 HSPs)
chr2 (1-217)||(28397326-28397542)
chr2 (225-294)||(28397201-28397270)
[»] chr3 (2 HSPs)
chr3 (64-126)||(10619546-10619608)
chr3 (96-141)||(21737768-21737813)
[»] scaffold0637 (1 HSPs)
scaffold0637 (93-134)||(40-81)
[»] chr5 (3 HSPs)
chr5 (40-125)||(20472042-20472127)
chr5 (91-140)||(30506876-30506925)
chr5 (91-140)||(30547219-30547268)
[»] chr1 (1 HSPs)
chr1 (55-128)||(32350197-32350270)


Alignment Details
Target: scaffold0066 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 4255 - 4470
Alignment:
Q  1 cacccacctaatttagtttctttaaggcataaaatccaaggacacttctccttcaccaacgagcgaacatcctttttcttttcaagccctcccaaccccc 100  Q
    |||| ||||||||||||||||| |||||||||||||||||||| ||| |||| |||||||||||||||||||||| ||||||||||||||||||  ||||    
T  4255 cacctacctaatttagtttcttgaaggcataaaatccaaggacgcttttcctgcaccaacgagcgaacatcctttctcttttcaagccctcccagtcccc 4354  T
Q  101 taacattccaagacaccaacttcatctcccacactctccccgttatccccttcgcctactcaacctactaagcagtcttacccgatcccctaggatctcc 200  Q
    ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  4355 taacattccaagacaccaacttcatctcccacactctcccc-tgatccccttcgcctactccacctactaagcagtcttacccgatcccctaggatctcc 4453  T
Q  201 cttcccctcaaccacat 217  Q
    |||||||||||||||||    
T  4454 cttcccctcaaccacat 4470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 225 - 294
Target Start/End: Original strand, 4526 - 4595
Alignment:
Q  225 attaaaacgcacacctatagtttcacccaaattcctgacatcttccctcaccaccttctcgctcctatgc 294  Q
    |||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||| ||||    
T  4526 attaaaacgcacacctatagattcacccaaattcctaacgtcttccctcaccaccttctcgctcccatgc 4595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 158; Significance: 4e-84; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 21551994 - 21552207
Alignment:
Q  1 cacccacctaatttagtttctttaaggcataaaatccaaggacacttctccttcaccaacgagcgaacatcctttttcttttcaagccctcccaaccccc 100  Q
    |||| ||||||||||||||||| |||||| |||||||||| || |||||||| |||||||||||||||||||||| ||||||||  |||||||| |||||    
T  21551994 cacctacctaatttagtttcttgaaggcaaaaaatccaagaacgcttctcctgcaccaacgagcgaacatcctttctcttttcacaccctcccagccccc 21552093  T
Q  101 taacattccaagacaccaacttcatctcccacactctccccgttatccccttcgcctactcaacctactaagcagtcttacccgatcccctaggatctcc 200  Q
    ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  21552094 taacattccaagacaccaacttcatctcccacactctccccctgatccccttcgcctactccacctactaagcagtcgtacccgatcccctaggatctcc 21552193  T
Q  201 cttcccctcaacca 214  Q
    ||||||||||||||    
T  21552194 cttcccctcaacca 21552207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 225 - 294
Target Start/End: Original strand, 21552266 - 21552335
Alignment:
Q  225 attaaaacgcacacctatagtttcacccaaattcctgacatcttccctcaccaccttctcgctcctatgc 294  Q
    |||||||| ||||||||||| ||| ||||||||||| || |||||||||| |||||||||||||| ||||    
T  21552266 attaaaactcacacctatagattctcccaaattcctaacgtcttccctcaacaccttctcgctcccatgc 21552335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 149; Significance: 1e-78; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 8773992 - 8774208
Alignment:
Q  1 cacccacctaatttagtttctttaaggcataaaatccaaggacacttctccttcaccaacgagcgaacatcctttttcttttcaagccctcccaaccccc 100  Q
    |||| ||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  8773992 cacctacctaatttagtttcctgaaggcataaaatccaaggacgcttctccttcaccaacgagcgaacctcctttttcttttcaagccctcccaaccccc 8774091  T
Q  101 taacattccaagacaccaacttcatctcccacactctccccgttatccccttcgcctactcaacctactaagcagtcttacccgatcccctaggatctcc 200  Q
    |||||||||||||||||||||||||||||||||||||| || | | ||||||||||||| | |||||||||||| ||||||| |||||||| |  |||||    
T  8774092 taacattccaagacaccaacttcatctcccacactctctccctgaaccccttcgcctacaccacctactaagcattcttacctgatcccctcgactctcc 8774191  T
Q  201 cttcccctcaaccacat 217  Q
    ||||||||||| |||||    
T  8774192 cttcccctcaaacacat 8774208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 18770551 - 18770767
Alignment:
Q  1 cacccacctaatttagtttctttaaggcataaaatccaaggacacttctccttcaccaacgagcgaacatcctttttcttttcaagccctcccaaccccc 100  Q
    |||| ||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||    
T  18770551 cacctacctaatttagtttcctgaaggcataaaatccaaggacgcttctccttcaccaacgagcgaacctcctttttcttttcaagccctccaaaccccc 18770650  T
Q  101 taacattccaagacaccaacttcatctcccacactctccccgttatccccttcgcctactcaacctactaagcagtcttacccgatcccctaggatctcc 200  Q
    |||||||||||||||||||||||||||||||||||||| || | | ||||||||||||| | |||||||||||| ||||||| |||||||| |  |||||    
T  18770651 taacattccaagacaccaacttcatctcccacactctcaccctgaaccccttcgcctacaccacctactaagcattcttacctgatccccttgactctcc 18770750  T
Q  201 cttcccctcaaccacat 217  Q
     |||||||||| |||||    
T  18770751 tttcccctcaatcacat 18770767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 225 - 294
Target Start/End: Original strand, 18770823 - 18770892
Alignment:
Q  225 attaaaacgcacacctatagtttcacccaaattcctgacatcttccctcaccaccttctcgctcctatgc 294  Q
    |||||||||||||||||||| |||||| |||||||| ||||| |||||||||||||||||||||| ||||    
T  18770823 attaaaacgcacacctatagattcacctaaattcctaacatcctccctcaccaccttctcgctcccatgc 18770892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 128
Target Start/End: Original strand, 13443260 - 13443333
Alignment:
Q  55 accaacgagcgaacatcctttttcttttcaagccctcccaaccccctaacattccaagacaccaacttcatctc 128  Q
    ||||| || ||||| |||||  |||| |||| |||||| ||||||| |||||||||||| | ||||||||||||    
T  13443260 accaaagaacgaacctccttcctcttctcaaaccctcctaacccccgaacattccaagaaatcaacttcatctc 13443333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 136
Target Start/End: Original strand, 7434413 - 7434457
Alignment:
Q  92 ccaaccccctaacattccaagacaccaacttcatctcccacactc 136  Q
    |||||||||||||||||||||| | ||| |||||| |||||||||    
T  7434413 ccaaccccctaacattccaagataacaatttcatcccccacactc 7434457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 141; Significance: 6e-74; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 28397542 - 28397326
Alignment:
Q  1 cacccacctaatttagtttctttaaggcataaaatccaaggacacttctccttcaccaacgagcgaacatcctttttcttttcaagccctcccaaccccc 100  Q
    |||| ||||||||||||||| | ||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||    
T  28397542 cacctacctaatttagtttcctgaaggcataaaaaccaaggacgcttctccttcaccaacgagcgaacctcctttttcttttcaagccctcctaaccccc 28397443  T
Q  101 taacattccaagacaccaacttcatctcccacactctccccgttatccccttcgcctactcaacctactaagcagtcttacccgatcccctaggatctcc 200  Q
    |||||||||||||||||||||||||||||||||||||| || | | ||||||||||||| | |||||||||||| ||||||| |||||||| |  |||||    
T  28397442 taacattccaagacaccaacttcatctcccacactctctccctgaaccccttcgcctacaccacctactaagcattcttacctgatcccctcgactctcc 28397343  T
Q  201 cttcccctcaaccacat 217  Q
    ||||||||||| |||||    
T  28397342 cttcccctcaaacacat 28397326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 225 - 294
Target Start/End: Complemental strand, 28397270 - 28397201
Alignment:
Q  225 attaaaacgcacacctatagtttcacccaaattcctgacatcttccctcaccaccttctcgctcctatgc 294  Q
    ||||||||| |||||||||| |||||| |||||| | |||||||||||||||||||||||||||| ||||    
T  28397270 attaaaacggacacctatagattcacctaaattcataacatcttccctcaccaccttctcgctcccatgc 28397201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 126
Target Start/End: Complemental strand, 10619608 - 10619546
Alignment:
Q  64 cgaacatcctttttcttttcaagccctcccaaccccctaacattccaagacaccaacttcatc 126  Q
    |||||||||||| ||||||| |  |||||||| ||||||||||||||||| | ||||||||||    
T  10619608 cgaacatcctttctcttttctaagcctcccaatcccctaacattccaagaaatcaacttcatc 10619546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 141
Target Start/End: Complemental strand, 21737813 - 21737768
Alignment:
Q  96 ccccctaacattccaagacaccaacttcatctcccacactctcccc 141  Q
    |||||||||||||||||| | |||||||||||||||| | ||||||    
T  21737813 ccccctaacattccaagataacaacttcatctcccacgccctcccc 21737768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0637 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0637
Description:

Target: scaffold0637; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 93 - 134
Target Start/End: Original strand, 40 - 81
Alignment:
Q  93 caaccccctaacattccaagacaccaacttcatctcccacac 134  Q
    ||||||||||||||||||||| | ||||||||||||||||||    
T  40 caaccccctaacattccaagataacaacttcatctcccacac 81  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 125
Target Start/End: Original strand, 20472042 - 20472127
Alignment:
Q  40 ggacacttctccttcaccaacgagcgaacatcctttttcttttcaagccctcccaaccccctaacattccaagacaccaacttcat 125  Q
    |||| ||| ||||||||||| || || || | ||||||||| |||| ||| ||||| ||||||| |||||| ||||||||||||||    
T  20472042 ggactcttatccttcaccaaagaccggacctactttttcttctcaatcccacccaaacccctaatattccatgacaccaacttcat 20472127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 91 - 140
Target Start/End: Complemental strand, 30506925 - 30506876
Alignment:
Q  91 cccaaccccctaacattccaagacaccaacttcatctcccacactctccc 140  Q
    ||||||||||| ||||||||||| | |||||||||||||||||| |||||    
T  30506925 cccaacccccttacattccaagataacaacttcatctcccacaccctccc 30506876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 91 - 140
Target Start/End: Complemental strand, 30547268 - 30547219
Alignment:
Q  91 cccaaccccctaacattccaagacaccaacttcatctcccacactctccc 140  Q
    ||||||||||| ||||||||||| | |||||||||||||||||| |||||    
T  30547268 cccaacccccttacattccaagataacaacttcatctcccacaccctccc 30547219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 128
Target Start/End: Complemental strand, 32350270 - 32350197
Alignment:
Q  55 accaacgagcgaacatcctttttcttttcaagccctcccaaccccctaacattccaagacaccaacttcatctc 128  Q
    ||||| || ||||| |||||  |||| |||| |||||| ||||||| |||||||||||| | ||||||||||||    
T  32350270 accaaagaacgaacctccttcctcttctcaaaccctcctaacccccgaacattccaagaaatcaacttcatctc 32350197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University