View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15788_high_5 (Length: 491)
Name: NF15788_high_5
Description: NF15788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15788_high_5 |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-125; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 232 - 491
Target Start/End: Original strand, 4953764 - 4954023
Alignment:
| Q |
232 |
taccaaaacaatcaattaaactaccatataacataaaacatgtcaaaatcaattcaaacaagcacgcagtcttaaccatcactgaatcaactttaaaata |
331 |
Q |
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|||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
4953764 |
taccgaaacaatcaattaaactaccagataacataaaacatgtcaaaatcaattcaaacaagcacacagtcttaaccatcactgaatcaactttaaaata |
4953863 |
T |
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| Q |
332 |
caactcgaaatatgagccatcagatctttatggaattgcgtgattacagagaatctaatataaaagacaaggtagatacctttcaggatatttgaatggt |
431 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4953864 |
caactcgaaatatgagctgtcagatctttatggaattgcgtgattacagataatctaatataaaagacaaggtagatacctttcaggatatttgaatggt |
4953963 |
T |
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| Q |
432 |
ttgggaagtttaagatgatctggggtgacaggttttcgcaattcattggagggtagttga |
491 |
Q |
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| T |
4953964 |
ttggggagtttgagatgatctggggtgacaggttttcgcaattcattggagggtagttga |
4954023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 232 - 491
Target Start/End: Original strand, 4938055 - 4938314
Alignment:
| Q |
232 |
taccaaaacaatcaattaaactaccatataacataaaacatgtcaaaatcaattcaaacaagcacgcagtcttaaccatcactgaatcaactttaaaata |
331 |
Q |
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|||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
4938055 |
taccgaaacaatcaattaaactaccagataacataaaacatgtcaaaatcaattcaaataagcacgcagtcttaaccatcactgaatcaactttaaaata |
4938154 |
T |
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| Q |
332 |
caactcgaaatatgagccatcagatctttatggaattgcgtgattacagagaatctaatataaaagacaaggtagatacctttcaggatatttgaatggt |
431 |
Q |
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|||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
4938155 |
caactcgaaatatgagccgtcggatctttatggaattgcgtcattacagagaatctaatataaaagacaaggtagatacctttcaagatatttgaatggt |
4938254 |
T |
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| Q |
432 |
ttgggaagtttaagatgatctggggtgacaggttttcgcaattcattggagggtagttga |
491 |
Q |
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| T |
4938255 |
ttggggagtttgagatgatatggggtgacaggttttcgcaattcattggagggtagttga |
4938314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 4937824 - 4937991
Alignment:
| Q |
1 |
tatcagttgggcttgtatacctaacaaaatgaagtaaaaaagaacaattagccaacacataatgatagatagatattcattcactaacccaactatggac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
4937824 |
tatcagttgggcttgtatacctaacaaaatgaagtaaaaaataacaattagccaacacataatgatagatagatattcattcactaacccaactaaggac |
4937923 |
T |
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| Q |
101 |
acaaaaattgattttgaatgtataaattctttaaaattggtttcaacataaaagtgatttacttttga |
168 |
Q |
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| T |
4937924 |
acaaaaattgattttgaatgtataaattctttaaaattggtttcaacataaaagtgatttacttttga |
4937991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 4953533 - 4953700
Alignment:
| Q |
1 |
tatcagttgggcttgtatacctaacaaaatgaagtaaaaaagaacaattagccaacacataatgatagatagatattcattcactaacccaactatggac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
4953533 |
tatcagttgggcttgtatacctaacaaaatgaagtaaaaaaaaacaattagccaacacataatgatagatagatattcattcactaacccaactaaggac |
4953632 |
T |
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| Q |
101 |
acaaaaattgattttgaatgtataaattctttaaaattggtttcaacataaaagtgatttacttttga |
168 |
Q |
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| T |
4953633 |
acaaaaattgattttgaatgtataaattctttaaaattggtttcaacataaaagtgatttacttttga |
4953700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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